F345557

General Info

Members Datasets Scaffolds Average Seq Length
232 139 464 352

Family's Representative Sequence

Representative Sequence 3300050511|nmdc:mga08y16_166_c1|nmdc:mga08y16_166_c1_30787_31908
Length 373
Sequence MGQILGLGITHYPGLSFKGNMARRIQMCLDDPALAERYRSVDDWHPTMREQWGSDQGQAHSDRHRQDLITQFRKIRAELDAFNPDFVLIWGDDQYENFREDCVPAFSILAYDSVDIQPWKGHHRGPNAWDEPEEQTFTVKGHREGGKFLARALLKDGIDVAYSYKPLHRPLGHAFFNSVMYLDYDRKGFPYPVVPFAVNSYGRWVVAAHGAPMLPSAAAQLPADDNDLDPPAPQPWRCFQVGGAIGRALEASPWRVAIIASSSWSHSFLVRKHSLMFPDVEADKRYYEALRNGDWDLWRNTTIEEAEDRGHHELLNWFCLAGAMHELGRKKPDESVFLESWITNSDKVFAVFLPKIRKTCLKTRSGGAAPTPA

Samples

Sample ID Description Type Environment
1 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
47 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
54 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
55 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027360 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
88 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
89 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
90 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
94 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
95 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
96 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
97 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
98 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
99 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
100 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
101 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
102 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
103 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
104 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
105 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
106 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
107 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
108 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
111 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
120 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
121 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
122 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
123 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
124 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
125 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
126 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
127 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
134 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
135 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
136 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
137 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
138 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
139 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.86
Rhizosphere 95.26
Stem 0
Stem Tuber 0
Unclassified 4.31

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga08y16_166_c1 3300050511 Bacteria 57434
2 Ga0070670_100132096 3300005331 Bacteria 2156
3 Ga0070689_100076918 3300005340 Bacteria 2615
4 Ga0070692_10094010 3300005345 Bacteria 1634
5 Ga0070669_100019668 3300005353 Bacteria 4824
6 Ga0070669_100072575 3300005353 Bacteria 2548
7 Ga0070671_100032881 3300005355 Bacteria 4287
8 Ga0070671_100083215 3300005355 Unclassified 2676
9 Ga0070674_100067179 3300005356 Bacteria 2521
10 Ga0070673_100030351 3300005364 Bacteria 4043
11 Ga0070673_100195991 3300005364 Unclassified 1737
12 Ga0070705_100032828 3300005440 Bacteria 2888
13 Ga0070700_100042177 3300005441 Bacteria 2800
14 Ga0070694_100184550 3300005444 Bacteria 1545
15 Ga0070708_100045137 3300005445 Bacteria 3881
16 Ga0070708_100060528 3300005445 Bacteria 3380
17 Ga0070662_100079141 3300005457 Bacteria 2443
18 Ga0068867_100028373 3300005459 Bacteria 4030
19 Ga0070706_100040309 3300005467 Bacteria 4311
20 Ga0070706_100052301 3300005467 Bacteria 3770
21 Ga0070707_100001799 3300005468 Bacteria 20594
22 Ga0070707_100037606 3300005468 Bacteria 4620
23 Ga0070707_100044219 3300005468 Bacteria 4263
24 Ga0070707_100069141 3300005468 Bacteria 3399
25 Ga0070707_100438829 3300005468 Bacteria 1266
26 Ga0070698_100105984 3300005471 Bacteria 2780
27 Ga0070698_100208913 3300005471 Bacteria 1887
28 Ga0070699_100009434 3300005518 Bacteria 8456
29 Ga0070699_100037697 3300005518 Bacteria 4185
30 Ga0070699_100043827 3300005518 Bacteria 3872
31 Ga0070699_100107396 3300005518 Bacteria 2449
32 Ga0070699_100341381 3300005518 Bacteria 1348
33 Ga0070697_100081348 3300005536 Bacteria 2669
34 Ga0070697_100158081 3300005536 Bacteria 1914
35 Ga0070686_100116165 3300005544 Bacteria 1831
36 Ga0070696_100032757 3300005546 Bacteria 3567
37 Ga0070664_100115624 3300005564 Unclassified 2345
38 Ga0068856_100188488 3300005614 Bacteria 2076
39 Ga0070702_100022541 3300005615 Bacteria 3331
40 Ga0068863_100030217 3300005841 Bacteria 5176
41 Ga0068858_100038857 3300005842 Bacteria 4414
42 Ga0068860_100107244 3300005843 Bacteria 2669
43 Ga0068862_100049716 3300005844 Bacteria 3581
44 Ga0068862_100250883 3300005844 Bacteria 1613
45 Ga0081455_10001134 3300005937 Bacteria 33332
46 Ga0081540_1045063 3300005983 Bacteria 2244
47 Ga0070717_10161121 3300006028 Bacteria 1946
48 Ga0097621_100140211 3300006237 Bacteria 2065
49 Ga0075428_100001790 3300006844 Bacteria 22959
50 Ga0075428_100501319 3300006844 Bacteria 1299
51 Ga0075428_100566060 3300006844 Bacteria 1214
52 Ga0075430_100023625 3300006846 Bacteria 5234
53 Ga0075431_100053172 3300006847 Bacteria 4176
54 Ga0075433_10006665 3300006852 Bacteria 9143
55 Ga0075433_10038202 3300006852 Bacteria 4145
56 Ga0075433_10409297 3300006852 Bacteria 1196
57 Ga0075434_100001694 3300006871 Bacteria 18862
58 Ga0075434_100076574 3300006871 Bacteria 3340
59 Ga0075429_100001914 3300006880 Bacteria 17265
60 Ga0075429_100004336 3300006880 Bacteria 12183
61 Ga0075429_100136201 3300006880 Bacteria 2149
62 Ga0075436_100190738 3300006914 Bacteria 1450
63 Ga0075436_100242684 3300006914 Bacteria 1282
64 Ga0075435_100012550 3300007076 Bacteria 6277
65 Ga0075435_100036067 3300007076 Bacteria 3928
66 Ga0075435_100060772 3300007076 Bacteria 3064
67 Ga0075435_100061418 3300007076 Bacteria 3049
68 Ga0075435_100067399 3300007076 Unclassified 2914
69 Ga0075435_100073770 3300007076 Bacteria 2790
70 Ga0099794_10015653 3300007265 Bacteria 3353
71 Ga0105240_10636021 3300009093 Bacteria 1171
72 Ga0111539_10004177 3300009094 Bacteria 18949
73 Ga0111539_10010140 3300009094 Bacteria 11871
74 Ga0105245_10148022 3300009098 Bacteria 2217
75 Ga0114129_10006809 3300009147 Bacteria 16229
76 Ga0114129_10026993 3300009147 Bacteria 8129
77 Ga0114129_10049046 3300009147 Bacteria 5934
78 Ga0114129_10214233 3300009147 Bacteria 2602
79 Ga0114129_10267940 3300009147 Bacteria 2286
80 Ga0114129_10421689 3300009147 Bacteria 1755
81 Ga0114129_10514654 3300009147 Bacteria 1561
82 Ga0114129_10663838 3300009147 Bacteria 1344
83 Ga0114129_10705643 3300009147 Bacteria 1296
84 Ga0114129_10755468 3300009147 Bacteria 1244
85 Ga0105242_10018035 3300009176 Bacteria 5512
86 Ga0105249_10067115 3300009553 Bacteria 3304
87 Ga0163162_10445802 3300013306 Bacteria 1426
88 Ga0157375_10029088 3300013308 Bacteria 5191
89 Ga0182008_10010789 3300014497 Bacteria 4882
90 Ga0157379_10078694 3300014968 Bacteria 2953
91 Ga0157379_10319526 3300014968 Bacteria 1417
92 Ga0157376_10075263 3300014969 Bacteria 2881
93 Ga0213873_10006034 3300021358 Bacteria 2362
94 Ga0213875_10000098 3300021388 Bacteria 98684
95 Ga0213875_10000748 3300021388 Bacteria 24571
96 Ga0213875_10005930 3300021388 Bacteria 6482
97 Ga0207682_10007457 3300025893 Bacteria 4357
98 Ga0207692_10062357 3300025898 Bacteria 1935
99 Ga0207699_10037176 3300025906 Bacteria 2781
100 Ga0207645_10017027 3300025907 Bacteria 4803
101 Ga0207684_10006027 3300025910 Bacteria 11090
102 Ga0207684_10019889 3300025910 Bacteria 5738
103 Ga0207684_10029920 3300025910 Bacteria 4636
104 Ga0207684_10163154 3300025910 Bacteria 1919
105 Ga0207707_10132250 3300025912 Bacteria 2182
106 Ga0207707_10257036 3300025912 Bacteria 1516
107 Ga0207695_10386135 3300025913 Bacteria 1285
108 Ga0207693_10038043 3300025915 Bacteria 3790
109 Ga0207662_10035943 3300025918 Bacteria 2895
110 Ga0207646_10036866 3300025922 Bacteria 4412
111 Ga0207646_10100992 3300025922 Bacteria 2586
112 Ga0207646_10162691 3300025922 Bacteria 2014
113 Ga0207681_10024500 3300025923 Bacteria 3874
114 Ga0207650_10031167 3300025925 Unclassified 3847
115 Ga0207650_10251957 3300025925 Bacteria 1429
116 Ga0207659_10000265 3300025926 Bacteria 31951
117 Ga0207700_10010109 3300025928 Bacteria 5932
118 Ga0207644_10379101 3300025931 Bacteria 1153
119 Ga0207706_10019043 3300025933 Bacteria 6175
120 Ga0207689_10146287 3300025942 Bacteria 1947
121 Ga0207679_10163135 3300025945 Unclassified 1827
122 Ga0207651_10026317 3300025960 Bacteria 3631
123 Ga0207668_10106030 3300025972 Unclassified 2099
124 Ga0207708_10014470 3300026075 Bacteria 5905
125 Ga0207702_10153446 3300026078 Bacteria 2097
126 Ga0207641_10014916 3300026088 Bacteria 6371
127 Ga0207641_10150175 3300026088 Bacteria 2110
128 Ga0207648_10034588 3300026089 Bacteria 4453
129 Ga0207676_10003018 3300026095 Bacteria 12006
130 Ga0207675_100073308 3300026118 Bacteria 3203
131 Ga0207683_10059797 3300026121 Bacteria 3348
132 Ga0209969_1000309 3300027360 Bacteria 6553
133 Ga0209967_1000442 3300027364 Bacteria 5441
134 Ga0210000_1000918 3300027462 Bacteria 4107
135 Ga0209995_1006016 3300027471 Bacteria 1953
136 Ga0209999_1000183 3300027543 Bacteria 8521
137 Ga0209971_1007716 3300027682 Bacteria 2555
138 Ga0209974_10012072 3300027876 Bacteria 2892
139 Ga0207428_10000036 3300027907 Bacteria 223539
140 Ga0207428_10010207 3300027907 Bacteria 8395
141 Ga0268265_10443640 3300028380 Bacteria 1210
142 Ga0307416_100382548 3300032002 Bacteria 1438
143 Ga0307411_10233695 3300032005 Bacteria 1435
144 Ga0373926_0035014 3300035083 Bacteria 1780
145 Ga0373927_0233103 3300035695 Bacteria 1210
146 Ga0373947_0053148 3300035725 Bacteria 2442
147 Ga0373937_0004383 3300036401 Bacteria 11988
148 Ga0436364_1089856 3300037853 Bacteria 1998
149 Ga0436364_1105247 3300037853 Bacteria 1288
150 Ga0436364_1356723 3300037853 Bacteria 99137
151 Ga0436364_1390920 3300037853 Bacteria 113944
152 Ga0436365_0499179 3300039437 Bacteria 1781
153 Ga0436365_0636036 3300039437 Bacteria 3038
154 Ga0436362_0334819 3300039453 Bacteria 3199
155 Ga0436362_0746057 3300039453 Bacteria 1919
156 Ga0439435_0061600 3300042436 Bacteria 1094
157 Ga0453683_0105308 3300044673 Bacteria 1772
158 Ga0451576_0182622 3300045051 Bacteria 2190
159 Ga0451576_0306243 3300045051 Bacteria 1662
160 Ga0495592_0139240 3300046454 Bacteria 1690
161 Ga0495580_0000937 3300046472 Bacteria 25474
162 Ga0495639_0116659 3300046475 Bacteria 1271
163 Ga0495586_0087069 3300046535 Bacteria 1722
164 Ga0495658_0037144 3300046683 Bacteria 2691
165 Ga0495669_0017968 3300046684 Bacteria 3037
166 Ga0496113_0226227 3300048916 Bacteria 1491
167 Ga0496114_0062716 3300048917 Bacteria 3111
168 Ga0501033_0099527 3300049570 Unclassified 2123
169 Ga0501036_0232333 3300049572 Bacteria 1547
170 Ga0501039_0004854 3300049575 Bacteria 10179
171 Ga0501040_0097474 3300049576 Bacteria 2049
172 Ga0501040_0148497 3300049576 Bacteria 1653
173 Ga0501040_0198960 3300049576 Bacteria 1422
174 Ga0501041_0112083 3300049577 Bacteria 1692
175 Ga0501042_0062577 3300049578 Bacteria 2659
176 Ga0501042_0149174 3300049578 Bacteria 1686
177 Ga0501046_0027314 3300049580 Bacteria 4657
178 Ga0501046_0045986 3300049580 Bacteria 3465
179 Ga0501048_0059094 3300049582 Bacteria 2717
180 Ga0501071_0015979 3300049587 Bacteria 5157
181 Ga0501071_0164882 3300049587 Unclassified 1658
182 Ga0501071_0288254 3300049587 Bacteria 1243
183 Ga0501072_0088292 3300049588 Bacteria 2460
184 Ga0501075_0007238 3300049591 Bacteria 7692
185 Ga0501075_0038943 3300049591 Bacteria 3556
186 Ga0501076_0005499 3300049592 Bacteria 9125
187 Ga0501076_0019870 3300049592 Bacteria 5138
188 Ga0501077_0140682 3300049593 Bacteria 1530
189 Ga0501079_0011833 3300049741 Bacteria 6661
190 Ga0501079_0063676 3300049741 Bacteria 2845
191 Ga0501080_0060622 3300049742 Bacteria 3522
192 Ga0501081_0005020 3300049743 Bacteria 8519
193 Ga0501081_0167654 3300049743 Bacteria 1585
194 Ga0501035_0053541 3300049822 Bacteria 3608
195 Ga0501045_0075114 3300049824 Bacteria 2489
196 Ga0501045_0291460 3300049824 Bacteria 1214
197 nmdc:mga05p37_178940_c1 3300050507 Bacteria 2582
198 nmdc:mga05p37_186747_c1 3300050507 Bacteria 2520
199 nmdc:mga05p37_213442_c1 3300050507 Bacteria 2332
200 nmdc:mga05p37_36509_c1 3300050507 Bacteria 4515
201 nmdc:mga05p37_86858_c1 3300050507 Bacteria 3855
202 nmdc:mga05p37_89973_c1 3300050507 Bacteria 3783
203 nmdc:mga05p37_952_c1 3300050507 Bacteria 32727
204 nmdc:mga09592_143480_c1 3300050508 Bacteria 2059
205 nmdc:mga09592_31790_c1 3300050508 Unclassified 4399
206 nmdc:mga09592_4128_c1 3300050508 Bacteria 11733
207 nmdc:mga0qj67_8941_c1 3300050509 Bacteria 7429
208 nmdc:mga06r32_118949_c1 3300050510 Bacteria 2605
209 nmdc:mga06r32_197099_c1 3300050510 Bacteria 2001
210 nmdc:mga06r32_215279_c1 3300050510 Bacteria 1909
211 nmdc:mga06r32_365592_c1 3300050510 Bacteria 1426
212 nmdc:mga06r32_40013_c1 3300050510 Bacteria 4450
213 nmdc:mga06r32_79370_c1 3300050510 Bacteria 3193
214 nmdc:mga08y16_2986_c1 3300050511 Bacteria 17445
215 nmdc:mga0n895_23351_c1 3300050512 Bacteria 5812
216 nmdc:mga0n895_2694_c1 3300050512 Bacteria 14016
217 nmdc:mga0n895_383057_c1 3300050512 Bacteria 1423
218 nmdc:mga0n895_41505_c1 3300050512 Bacteria 4474
219 nmdc:mga0rr50_11804_c1 3300050513 Bacteria 5610
220 nmdc:mga0rr50_15272_c1 3300050513 Bacteria 5065
221 nmdc:mga0rr50_175064_c1 3300050513 Bacteria 1751
222 nmdc:mga0rr50_22210_c1 3300050513 Bacteria 4351
223 nmdc:mga0rr50_26488_c1 3300050513 Bacteria 4046
224 nmdc:mga08x19_227593_c1 3300050514 Bacteria 1283
225 nmdc:mga0a205_13224_c1 3300050515 Bacteria 7672
226 Ga0495601_0180945 3300053077 Bacteria 1378
227 Ga0501082_0006302 3300060353 Bacteria 10290
228 Ga0501082_0016259 3300060353 Bacteria 6406
229 Ga0530510_0001248 3300061734 Bacteria 16980
230 Ga0530510_0001826 3300061734 Bacteria 14528
231 Ga0530510_0016067 3300061734 Bacteria 5291
232 Ga0530510_0036863 3300061734 Bacteria 3523
233 nmdc:mga08y16_166_c1
234 Ga0070670_100132096
235 Ga0070689_100076918
236 Ga0070692_10094010
237 Ga0070669_100019668
238 Ga0070669_100072575
239 Ga0070671_100032881
240 Ga0070671_100083215
241 Ga0070674_100067179
242 Ga0070673_100030351
243 Ga0070673_100195991
244 Ga0070705_100032828
245 Ga0070700_100042177
246 Ga0070694_100184550
247 Ga0070708_100045137
248 Ga0070708_100060528
249 Ga0070662_100079141
250 Ga0068867_100028373
251 Ga0070706_100040309
252 Ga0070706_100052301
253 Ga0070707_100001799
254 Ga0070707_100037606
255 Ga0070707_100044219
256 Ga0070707_100069141
257 Ga0070707_100438829
258 Ga0070698_100105984
259 Ga0070698_100208913
260 Ga0070699_100009434
261 Ga0070699_100037697
262 Ga0070699_100043827
263 Ga0070699_100107396
264 Ga0070699_100341381
265 Ga0070697_100081348
266 Ga0070697_100158081
267 Ga0070686_100116165
268 Ga0070696_100032757
269 Ga0070664_100115624
270 Ga0068856_100188488
271 Ga0070702_100022541
272 Ga0068863_100030217
273 Ga0068858_100038857
274 Ga0068860_100107244
275 Ga0068862_100049716
276 Ga0068862_100250883
277 Ga0081455_10001134
278 Ga0081540_1045063
279 Ga0070717_10161121
280 Ga0097621_100140211
281 Ga0075428_100001790
282 Ga0075428_100501319
283 Ga0075428_100566060
284 Ga0075430_100023625
285 Ga0075431_100053172
286 Ga0075433_10006665
287 Ga0075433_10038202
288 Ga0075433_10409297
289 Ga0075434_100001694
290 Ga0075434_100076574
291 Ga0075429_100001914
292 Ga0075429_100004336
293 Ga0075429_100136201
294 Ga0075436_100190738
295 Ga0075436_100242684
296 Ga0075435_100012550
297 Ga0075435_100036067
298 Ga0075435_100060772
299 Ga0075435_100061418
300 Ga0075435_100067399
301 Ga0075435_100073770
302 Ga0099794_10015653
303 Ga0105240_10636021
304 Ga0111539_10004177
305 Ga0111539_10010140
306 Ga0105245_10148022
307 Ga0114129_10006809
308 Ga0114129_10026993
309 Ga0114129_10049046
310 Ga0114129_10214233
311 Ga0114129_10267940
312 Ga0114129_10421689
313 Ga0114129_10514654
314 Ga0114129_10663838
315 Ga0114129_10705643
316 Ga0114129_10755468
317 Ga0105242_10018035
318 Ga0105249_10067115
319 Ga0163162_10445802
320 Ga0157375_10029088
321 Ga0182008_10010789
322 Ga0157379_10078694
323 Ga0157379_10319526
324 Ga0157376_10075263
325 Ga0213873_10006034
326 Ga0213875_10000098
327 Ga0213875_10000748
328 Ga0213875_10005930
329 Ga0207682_10007457
330 Ga0207692_10062357
331 Ga0207699_10037176
332 Ga0207645_10017027
333 Ga0207684_10006027
334 Ga0207684_10019889
335 Ga0207684_10029920
336 Ga0207684_10163154
337 Ga0207707_10132250
338 Ga0207707_10257036
339 Ga0207695_10386135
340 Ga0207693_10038043
341 Ga0207662_10035943
342 Ga0207646_10036866
343 Ga0207646_10100992
344 Ga0207646_10162691
345 Ga0207681_10024500
346 Ga0207650_10031167
347 Ga0207650_10251957
348 Ga0207659_10000265
349 Ga0207700_10010109
350 Ga0207644_10379101
351 Ga0207706_10019043
352 Ga0207689_10146287
353 Ga0207679_10163135
354 Ga0207651_10026317
355 Ga0207668_10106030
356 Ga0207708_10014470
357 Ga0207702_10153446
358 Ga0207641_10014916
359 Ga0207641_10150175
360 Ga0207648_10034588
361 Ga0207676_10003018
362 Ga0207675_100073308
363 Ga0207683_10059797
364 Ga0209969_1000309
365 Ga0209967_1000442
366 Ga0210000_1000918
367 Ga0209995_1006016
368 Ga0209999_1000183
369 Ga0209971_1007716
370 Ga0209974_10012072
371 Ga0207428_10000036
372 Ga0207428_10010207
373 Ga0268265_10443640
374 Ga0307416_100382548
375 Ga0307411_10233695
376 Ga0373926_0035014
377 Ga0373927_0233103
378 Ga0373947_0053148
379 Ga0373937_0004383
380 Ga0436364_1089856
381 Ga0436364_1105247
382 Ga0436364_1356723
383 Ga0436364_1390920
384 Ga0436365_0499179
385 Ga0436365_0636036
386 Ga0436362_0334819
387 Ga0436362_0746057
388 Ga0439435_0061600
389 Ga0453683_0105308
390 Ga0451576_0182622
391 Ga0451576_0306243
392 Ga0495592_0139240
393 Ga0495580_0000937
394 Ga0495639_0116659
395 Ga0495586_0087069
396 Ga0495658_0037144
397 Ga0495669_0017968
398 Ga0496113_0226227
399 Ga0496114_0062716
400 Ga0501033_0099527
401 Ga0501036_0232333
402 Ga0501039_0004854
403 Ga0501040_0097474
404 Ga0501040_0148497
405 Ga0501040_0198960
406 Ga0501041_0112083
407 Ga0501042_0062577
408 Ga0501042_0149174
409 Ga0501046_0027314
410 Ga0501046_0045986
411 Ga0501048_0059094
412 Ga0501071_0015979
413 Ga0501071_0164882
414 Ga0501071_0288254
415 Ga0501072_0088292
416 Ga0501075_0007238
417 Ga0501075_0038943
418 Ga0501076_0005499
419 Ga0501076_0019870
420 Ga0501077_0140682
421 Ga0501079_0011833
422 Ga0501079_0063676
423 Ga0501080_0060622
424 Ga0501081_0005020
425 Ga0501081_0167654
426 Ga0501035_0053541
427 Ga0501045_0075114
428 Ga0501045_0291460
429 nmdc:mga05p37_178940_c1
430 nmdc:mga05p37_186747_c1
431 nmdc:mga05p37_213442_c1
432 nmdc:mga05p37_36509_c1
433 nmdc:mga05p37_86858_c1
434 nmdc:mga05p37_89973_c1
435 nmdc:mga05p37_952_c1
436 nmdc:mga09592_143480_c1
437 nmdc:mga09592_31790_c1
438 nmdc:mga09592_4128_c1
439 nmdc:mga0qj67_8941_c1
440 nmdc:mga06r32_118949_c1
441 nmdc:mga06r32_197099_c1
442 nmdc:mga06r32_215279_c1
443 nmdc:mga06r32_365592_c1
444 nmdc:mga06r32_40013_c1
445 nmdc:mga06r32_79370_c1
446 nmdc:mga08y16_2986_c1
447 nmdc:mga0n895_23351_c1
448 nmdc:mga0n895_2694_c1
449 nmdc:mga0n895_383057_c1
450 nmdc:mga0n895_41505_c1
451 nmdc:mga0rr50_11804_c1
452 nmdc:mga0rr50_15272_c1
453 nmdc:mga0rr50_175064_c1
454 nmdc:mga0rr50_22210_c1
455 nmdc:mga0rr50_26488_c1
456 nmdc:mga08x19_227593_c1
457 nmdc:mga0a205_13224_c1
458 Ga0495601_0180945
459 Ga0501082_0006302
460 Ga0501082_0016259
461 Ga0530510_0001248
462 Ga0530510_0001826
463 Ga0530510_0016067
464 Ga0530510_0036863

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02900

LigB

Catalytic LigB subunit of aromatic ring-opening dioxygenase

226

350

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3wrc-assembly1.cif.gz_A crystal structure of the anaerobic desb-protocatechuate (pca) complex 0.8303 2 354
3wrb-assembly1.cif.gz_A crystal structure of the anaerobic h124f desb-gallate complex 0.7991 2 354
3wpm-assembly1.cif.gz_A crystal structure of the anaerobic desb-gallate complex by co-crystallization 0.7968 2 355
3wku-assembly1.cif.gz_B crystal structure of the anaerobic desb-gallate complex 0.7653 1 354
1bou-assembly1.cif.gz_D three-dimensional structure of ligab 0.7556 1 355
ID Description Score Start End Superfamily
3wrcA01 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.8292 1 354 3.40.830.10
3wrcA01 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.7566 1 354 3.40.830.10
1bouB00 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.7457 1 355 3.40.830.10
5heeB00 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.7168 1 354 3.40.830.10
5heeB00 Alpha Beta;3-Layer(aba) Sandwich;Protocatechuate 4,5-dioxygenase; Chain B;LigB-like 0.7092 1 354 3.40.830.10
ID Description Score Start End GO Terms
AF-A0A2V6XDG3-F1-model_v4 Extradiol ring-cleavage dioxygenase 0.9853 1 310 GO:0051213
AF-A0A2V6XDG3-F1-model_v4 Extradiol ring-cleavage dioxygenase 0.9822 1 310 GO:0051213
AF-A0A7C3JUW3-F1-model_v4 Extradiol ring-cleavage dioxygenase 0.9771 1 249 GO:0051213
AF-A0A7V1QSY7-F1-model_v4 Extradiol ring-cleavage dioxygenase 0.9713 1 355 GO:0051213
AF-A0A2S6QLL1-F1-model_v4 Extradiol ring-cleavage dioxygenase class III enzyme subunit B domain-containing protein 0.9706 1 355 GO:0008198
GO:0016491

Map