F345216

General Info

Members Datasets Scaffolds Average Seq Length
232 152 211 232

Family's Representative Sequence

Representative Sequence 3300031711|Ga0265314_10082732|Ga0265314_100827322
Length 256
Sequence VSTPVQPRFARVAAAIGEPTRALMLSRLLDGRCYTATELAEHAGVAASTASQHLKVLVDEGLAQVRAQGRHRYFMLADADVAHALEALLRVADGALPETTRWQATAMRGLRHARTCYGHLAGELGVLLCESLVQQGWVNAVDGEGRNFELTPAGMAGLARLGVPALAIERAAGEECAGGRQARRQLYGCVDWSERRDHFAGPLAVALLETLVGQGWLRRASESRELTVTAAGRLPLDRLLGPGLAVAASPLALAEK

Samples

Sample ID Description Type Environment
1 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
2 2643221585 Pelomonas sp. Root662 Isolate Unclassified
3 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
4 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
5 2643221656 Pelomonas sp. Root405 Isolate Unclassified
6 2738541297 Duganella sp. GV083 Isolate Unclassified
7 2738541337 Pelomonas sp. BT06 Isolate Unclassified
8 2738541357 Duganella sp. GV053 Isolate Unclassified
9 2738543003 Duganella sp. GV066 Isolate Unclassified
10 2738543026 Duganella sp. GV089 Isolate Unclassified
11 2738543029 Duganella sp. GV039 Isolate Unclassified
12 2842711865 Duganella sp. R-73148 Isolate Unclassified
13 2857553236 Duganella sp. R-74557 Isolate Unclassified
14 2857558681 Duganella sp. R-74565 Isolate Unclassified
15 2857564685 Duganella sp. R-74599 Isolate Unclassified
16 2884811622 Herbaspirillum sp. 3C11 Isolate Unclassified
17 2884836552 Herbaspirillum sp. 3R-11 Isolate Unclassified
18 2884852848 Herbaspirillum sp. 3R11 Isolate Unclassified
19 2896154374 Herbaspirillum sp. 3R-3a1 Isolate Nodule
20 2904424332 Duganella sp. 1411 Isolate Rhizosphere
21 2919476304 Duganella sp. 3397 Isolate Unclassified
22 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
23 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
24 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
28 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
29 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
30 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
31 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
32 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
33 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
34 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
35 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
36 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
37 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
38 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
41 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
42 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
43 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
44 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
45 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
49 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
50 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
51 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
52 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
53 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
55 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
56 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
57 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
69 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
70 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
71 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
72 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
73 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
74 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
75 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
76 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
77 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
78 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
79 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
80 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
85 3300042116 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126F_E14_082316_1792 Metagenome Rhizosphere
86 3300042117 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0415F_E14_082316_1937 Metagenome Rhizosphere
87 3300042120 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 Metagenome Rhizosphere
88 3300042127 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 Metagenome Rhizosphere
89 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
90 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
91 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
92 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
93 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
94 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
97 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
98 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
99 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
100 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
101 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
102 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
103 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
104 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
105 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
106 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
107 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
108 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
109 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
110 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
111 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
112 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
113 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
114 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
115 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
116 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
117 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
118 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
119 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
120 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
121 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
122 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
123 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
124 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
125 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
126 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
127 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
128 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
129 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
130 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
131 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
132 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
133 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
134 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
135 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
136 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
137 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
140 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
141 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
142 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
143 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
144 3300049764 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_A_4_control Metagenome Rhizosphere
145 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
146 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
149 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
150 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
151 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
152 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.95
Metatranscriptomes 0
Isolates 9.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.48
Nodule 1.29
Rhizoplane 1.72
Rhizosphere 71.12
Stem 0
Stem Tuber 0
Unclassified 16.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001413 3300002738 Bacteria 8607
2 JGI25150J39212_1011433 3300002774 Bacteria 1609
3 rootH1_10002557 3300003316 Bacteria 7873
4 rootH1_10138230 3300003316 Bacteria 1932
5 rootL2_10014952 3300003322 Bacteria 3475
6 rootL2_10042033 3300003322 Bacteria 2356
7 rootL2_10069998 3300003322 Bacteria 2176
8 rootL2_10082382 3300003322 Bacteria 5118
9 rootL2_10091481 3300003322 Bacteria 7906
10 rootH1_10007266 3300003323 Bacteria 4338
11 rootH1_10031506 3300003323 Bacteria 2281
12 rootH1_10244054 3300003323 Bacteria 2361
13 Ga0055529_1000080 3300003763 Bacteria 148614
14 Ga0055526_1000106 3300003771 Bacteria 73007
15 Ga0055526_1000114 3300003771 Bacteria 71399
16 Ga0055531_10000154 3300003794 Bacteria 79686
17 Ga0065714_10156388 3300005288 Bacteria 1076
18 Ga0065715_10009000 3300005293 Bacteria 3283
19 Ga0070660_100098116 3300005339 Bacteria 2319
20 Ga0070659_100173959 3300005366 Bacteria 1765
21 Ga0070681_10000797 3300005458 Bacteria 26270
22 Ga0070679_100152275 3300005530 Bacteria 2289
23 Ga0068853_100169105 3300005539 Bacteria 1977
24 Ga0068855_100112184 3300005563 Bacteria 3129
25 Ga0068855_100156175 3300005563 Bacteria 2592
26 Ga0070664_100037095 3300005564 Bacteria 4096
27 Ga0068857_100167660 3300005577 Bacteria 1995
28 Ga0068856_100004214 3300005614 Bacteria 14351
29 Ga0068856_100375754 3300005614 Bacteria 1440
30 Ga0068852_100403039 3300005616 Bacteria 1346
31 Ga0075370_10027912 3300006353 Bacteria 3134
32 Ga0079104_1009200 3300006946 Bacteria 3367
33 Ga0105244_10003665 3300009036 Bacteria 10850
34 Ga0105244_10009135 3300009036 Bacteria 6118
35 Ga0105243_10011995 3300009148 Bacteria 6552
36 Ga0157370_10001155 3300013104 Bacteria 32916
37 Ga0157370_10097669 3300013104 Bacteria 2755
38 Ga0157370_10346695 3300013104 Bacteria 1369
39 Ga0157372_10002247 3300013307 Bacteria 20968
40 Ga0182006_1000026 3300015261 Bacteria 253543
41 Ga0182005_1000007 3300015265 Bacteria 490994
42 Ga0213872_10000135 3300021361 Bacteria 67262
43 Ga0213872_10000938 3300021361 Bacteria 20482
44 Ga0213872_10010492 3300021361 Bacteria 4407
45 Ga0213872_10061604 3300021361 Bacteria 1696
46 Ga0207425_1000264 3300025245 Bacteria 38905
47 Ga0209646_1000010 3300025246 Bacteria 573803
48 Ga0209455_1000037 3300025272 Bacteria 464097
49 Ga0209025_1002375 3300025294 Bacteria 20145
50 Ga0209564_1000009 3300025295 Bacteria 950196
51 Ga0209564_1000033 3300025295 Bacteria 446200
52 Ga0209758_1000751 3300025297 Bacteria 47038
53 Ga0209051_1014555 3300025303 Bacteria 3664
54 Ga0209257_1000016 3300025304 Bacteria 908015
55 Ga0209257_1023430 3300025304 Bacteria 2171
56 Ga0207655_1009587 3300025728 Bacteria 5997
57 Ga0207655_1050923 3300025728 Bacteria 1678
58 Ga0207707_10064110 3300025912 Bacteria 3198
59 Ga0207707_10159753 3300025912 Bacteria 1971
60 Ga0207660_10089138 3300025917 Bacteria 2283
61 Ga0207657_10159497 3300025919 Bacteria 1833
62 Ga0207709_10010913 3300025935 Bacteria 5006
63 Ga0207679_10042532 3300025945 Bacteria 3266
64 Ga0207667_10057578 3300025949 Bacteria 4080
65 Ga0207667_10687566 3300025949 Bacteria 1026
66 Ga0207702_10022253 3300026078 Bacteria 5253
67 Ga0207702_10294734 3300026078 Bacteria 1538
68 Ga0207674_10373106 3300026116 Bacteria 1379
69 Ga0209281_1012717 3300027111 Bacteria 1838
70 Ga0307515_10051844 3300028794 Bacteria 6104
71 Ga0307515_10060021 3300028794 Bacteria 5437
72 Ga0307408_100000039 3300031548 Bacteria 177825
73 Ga0307408_100274887 3300031548 Bacteria 1400
74 Ga0265314_10082732 3300031711 Bacteria 2111
75 Ga0307409_101112619 3300031995 Unclassified 811
76 Ga0373950_0006986 3300034818 Bacteria 1739
77 Ga0373940_0006561 3300035088 Bacteria 2586
78 Ga0373951_0022945 3300035091 Bacteria 1439
79 Ga0373939_0000060 3300035114 Bacteria 37822
80 Ga0373960_0000613 3300035121 Bacteria 7303
81 Ga0373961_0036691 3300035241 Unclassified 1397
82 Ga0373931_0000365 3300035691 Bacteria 18623
83 Ga0373937_0171988 3300036401 Bacteria 2033
84 Ga0395900_0383066 3300037418 Bacteria 1374
85 Ga0395905_0003039 3300037471 Bacteria 18175
86 Ga0395905_0365003 3300037471 Unclassified 1337
87 Ga0395901_0083201 3300038443 Bacteria 3345
88 Ga0436361_0285442 3300039447 Bacteria 14396
89 Ga0436361_0285806 3300039447 Bacteria 16514
90 Ga0436361_1030790 3300039447 Bacteria 5753
91 Ga0436361_1105477 3300039447 Bacteria 3760
92 Ga0450912_000525 3300042116 Bacteria 1938
93 Ga0450913_009482 3300042117 Unclassified 766
94 Ga0450917_000597 3300042120 Bacteria 2689
95 Ga0450890_000127 3300042127 Bacteria 11923
96 Ga0450891_001133 3300042129 Bacteria 2773
97 Ga0450892_001721 3300042130 Bacteria 2026
98 Ga0450902_005955 3300042137 Bacteria 1859
99 Ga0450903_004419 3300042138 Bacteria 2396
100 Ga0450889_000466 3300042144 Bacteria 4489
101 Ga0450916_001471 3300042530 Bacteria 2365
102 Ga0451576_0086296 3300045051 Bacteria 3264
103 Ga0495617_000821 3300046452 Bacteria 14904
104 Ga0495617_001687 3300046452 Bacteria 9492
105 Ga0495627_000055 3300046453 Bacteria 149482
106 Ga0495590_0000032 3300046457 Bacteria 139575
107 Ga0495638_0000190 3300046460 Bacteria 93094
108 Ga0495638_0122524 3300046460 Bacteria 1535
109 Ga0495638_0145066 3300046460 Bacteria 1382
110 Ga0495653_0000038 3300046463 Bacteria 120385
111 Ga0495650_0000105 3300046471 Bacteria 205855
112 Ga0495650_0001997 3300046471 Bacteria 17912
113 Ga0495650_0004484 3300046471 Bacteria 9542
114 Ga0495650_0016436 3300046471 Bacteria 3747
115 Ga0495605_0000044 3300046474 Bacteria 182513
116 Ga0495585_0002255 3300046492 Bacteria 13941
117 Ga0495607_0003912 3300046501 Bacteria 11219
118 Ga0495607_0017003 3300046501 Bacteria 4682
119 Ga0495583_0006779 3300046506 Bacteria 7401
120 Ga0495583_0026572 3300046506 Bacteria 2866
121 Ga0495606_0000229 3300046507 Bacteria 98732
122 Ga0495606_0002019 3300046507 Bacteria 24910
123 Ga0495606_0003167 3300046507 Bacteria 17804
124 Ga0495606_0007149 3300046507 Bacteria 10085
125 Ga0495606_0015594 3300046507 Bacteria 5844
126 Ga0495606_0029504 3300046507 Bacteria 3850
127 Ga0495610_0000003 3300046512 Bacteria 1203910
128 Ga0495610_0011415 3300046512 Bacteria 5432
129 Ga0495610_0014075 3300046512 Bacteria 4720
130 Ga0495610_0014167 3300046512 Bacteria 4699
131 Ga0495610_0025800 3300046512 Bacteria 3147
132 Ga0495610_0108391 3300046512 Bacteria 1233
133 Ga0495637_0000318 3300046520 Bacteria 37411
134 Ga0495637_0008933 3300046520 Bacteria 4904
135 Ga0495643_0004316 3300046522 Bacteria 10008
136 Ga0495644_0100450 3300046523 Unclassified 1094
137 Ga0495648_0000441 3300046524 Bacteria 44737
138 Ga0495648_0003770 3300046524 Bacteria 13189
139 Ga0495648_0007733 3300046524 Bacteria 8560
140 Ga0495648_0014388 3300046524 Bacteria 5795
141 Ga0495648_0026226 3300046524 Bacteria 3927
142 Ga0495642_0002788 3300046528 Bacteria 6996
143 Ga0495654_0000028 3300046530 Bacteria 223384
144 Ga0495654_0009846 3300046530 Bacteria 5223
145 Ga0495609_0001604 3300046538 Bacteria 14785
146 Ga0495609_0013080 3300046538 Bacteria 3926
147 Ga0495609_0043237 3300046538 Bacteria 2022
148 Ga0495597_0006208 3300046542 Bacteria 6201
149 Ga0495622_0001529 3300046557 Bacteria 11555
150 Ga0495633_0002043 3300046558 Bacteria 14561
151 Ga0495633_0002920 3300046558 Bacteria 11718
152 Ga0495633_0007620 3300046558 Bacteria 6197
153 Ga0495633_0009319 3300046558 Bacteria 5434
154 Ga0495633_0082347 3300046558 Bacteria 1497
155 Ga0495668_0000118 3300046616 Bacteria 119439
156 Ga0495668_0002636 3300046616 Bacteria 14417
157 Ga0495668_0003574 3300046616 Bacteria 11540
158 Ga0495625_0004714 3300046660 Bacteria 12767
159 Ga0495625_0027255 3300046660 Bacteria 4305
160 Ga0495625_0081744 3300046660 Bacteria 2248
161 Ga0495625_0369575 3300046660 Bacteria 902
162 Ga0495661_0075607 3300046665 Bacteria 1957
163 Ga0495657_0082958 3300046675 Bacteria 2070
164 Ga0495671_0000001 3300046692 Bacteria 1169494
165 Ga0495671_0030071 3300046692 Bacteria 2784
166 Ga0495671_0039291 3300046692 Bacteria 2390
167 Ga0495671_0249651 3300046692 Bacteria 856
168 Ga0495649_0009338 3300046694 Bacteria 5835
169 Ga0495660_0001549 3300046810 Bacteria 15463
170 Ga0495660_0003988 3300046810 Bacteria 9004
171 Ga0495660_0016969 3300046810 Bacteria 4192
172 Ga0495660_0091271 3300046810 Bacteria 1582
173 Ga0495636_0002652 3300047318 Bacteria 6902
174 Ga0495672_0003662 3300047320 Bacteria 13005
175 Ga0495687_003259 3300047443 Bacteria 11972
176 Ga0495687_003338 3300047443 Bacteria 11736
177 Ga0495679_016647 3300047446 Bacteria 2654
178 Ga0495673_0000006 3300047469 Bacteria 908691
179 Ga0495673_0000024 3300047469 Bacteria 521349
180 Ga0495673_0000049 3300047469 Bacteria 265878
181 Ga0495681_0002682 3300047470 Bacteria 12608
182 Ga0495681_0022896 3300047470 Bacteria 3332
183 Ga0495686_0010982 3300047472 Bacteria 6406
184 Ga0495686_0019148 3300047472 Bacteria 4578
185 Ga0496103_0006454 3300048906 Bacteria 6999
186 Ga0496110_0832400 3300048913 Bacteria 828
187 Ga0496111_0459814 3300048914 Bacteria 939
188 Ga0496114_0031335 3300048917 Bacteria 4376
189 Ga0496121_0269834 3300048924 Unclassified 1170
190 Ga0496124_0040232 3300048927 Bacteria 4046
191 Ga0496124_0309880 3300048927 Unclassified 1136
192 Ga0496125_0000569 3300048928 Bacteria 63317
193 Ga0496126_0284909 3300048929 Bacteria 1368
194 Ga0495678_000304 3300049459 Bacteria 53274
195 Ga0495678_002757 3300049459 Bacteria 11511
196 Ga0495678_010501 3300049459 Bacteria 4498
197 Ga0501300_014073 3300049523 Bacteria 1168
198 Ga0501211_000165 3300049658 Bacteria 5358
199 Ga0501235_006822 3300049669 Bacteria 2485
200 Ga0501267_001121 3300049764 Bacteria 2236
201 Ga0501269_000068 3300049766 Bacteria 32230
202 Ga0501035_0405341 3300049822 Bacteria 1134
203 Ga0501044_0219322 3300049823 Bacteria 1853
204 Ga0501044_0740092 3300049823 Bacteria 866
205 nmdc:mga0k408_355602_c1 3300050493 Bacteria 873
206 nmdc:mga07m45_39506_c1 3300050496 Bacteria 2637
207 Ga0500594_0002728 3300053118 Bacteria 3846
208 Ga0500618_005290 3300053125 Bacteria 3956
209 Ga0500618_035697 3300053125 Unclassified 1154
210 Ga0500586_000672 3300053145 Bacteria 6999
211 Ga0500586_002289 3300053145 Bacteria 4272

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300035088 Ga0373940_0006561 Ga0373940_0006561_15_629 197
2 3300042117 Ga0450913_009482 Ga0450913_009482_105_737 202
3 3300050493 nmdc:mga0k408_355602_c1 nmdc:mga0k408_355602_c1_225_857 202
4 3300046523 Ga0495644_0100450 Ga0495644_0100450_449_1075 206
5 3300049823 Ga0501044_0740092 Ga0501044_0740092_219_854 206
6 3300046660 Ga0495625_0027255 Ga0495625_0027255_3650_4279 207
7 3300046558 Ga0495633_0082347 Ga0495633_0082347_616_1260 210
8 3300045051 Ga0451576_0086296 Ga0451576_0086296_1536_2228 211
9 3300031548 Ga0307408_100000039 Ga0307408_10000003951 214
10 3300003323 rootH1_10007266 rootH1_100072663 215
11 3300006353 Ga0075370_10027912 Ga0075370_100279122 215
12 3300050496 nmdc:mga07m45_39506_c1 nmdc:mga07m45_39506_c1_783_1478 215
13 3300003316 rootH1_10002557 rootH1_1000255710 216
14 3300003322 rootL2_10091481 rootL2_1009148110 216
15 3300053125 Ga0500618_035697 Ga0500618_035697_457_1122 217
16 iso_pu_bacteria 2643221585 2643934693 217
17 iso_pu_bacteria 2643221656 2644316179 217
18 3300034818 Ga0373950_0006986 Ga0373950_0006986_985_1662 218
19 3300035091 Ga0373951_0022945 Ga0373951_0022945_683_1360 218
20 3300035114 Ga0373939_0000060 Ga0373939_0000060_16858_17535 218
21 3300035121 Ga0373960_0000613 Ga0373960_0000613_3489_4166 218
22 3300035241 Ga0373961_0036691 Ga0373961_0036691_685_1362 218
23 3300035691 Ga0373931_0000365 Ga0373931_0000365_12972_13649 218
24 iso_pu_bacteria 2643221639 2644219023 218
25 iso_pu_bacteria 2643221646 2644255531 218
26 iso_pu_bacteria 2643221544 2643744682 219
27 iso_pu_bacteria 2738541337 2739053998 219
28 iso_pu_bacteria 2857564685 2857564958 219
29 iso_pu_bacteria 2738541297 2738829468 220
30 iso_pu_bacteria 2738541357 2739153264 220
31 iso_pu_bacteria 2738543003 2739195184 220
32 iso_pu_bacteria 2738543026 2739321660 220
33 iso_pu_bacteria 2738543029 2739339784 220
34 3300005614 Ga0068856_100375754 Ga0068856_1003757543 221
35 3300026078 Ga0207702_10294734 Ga0207702_102947343 221
36 3300003322 rootL2_10042033 rootL2_100420332 222
37 3300003323 rootH1_10031506 rootH1_100315062 222
38 3300028794 Ga0307515_10051844 Ga0307515_100518443 222
39 3300028794 Ga0307515_10060021 Ga0307515_100600216 222
40 3300031548 Ga0307408_100274887 Ga0307408_1002748873 222
41 3300031995 Ga0307409_101112619 Ga0307409_1011126191 222
42 3300042127 Ga0450890_000127 Ga0450890_000127_679_1368 222
43 3300042129 Ga0450891_001133 Ga0450891_001133_18_707 222
44 3300042130 Ga0450892_001721 Ga0450892_001721_409_1098 222
45 3300042137 Ga0450902_005955 Ga0450902_005955_95_784 222
46 3300042138 Ga0450903_004419 Ga0450903_004419_407_1096 222
47 3300042144 Ga0450889_000466 Ga0450889_000466_3787_4476 222
48 3300042530 Ga0450916_001471 Ga0450916_001471_1403_2092 222
49 3300003322 rootL2_10082382 rootL2_100823826 223
50 3300003794 Ga0055531_10000154 Ga0055531_1000015436 223
51 3300009148 Ga0105243_10011995 Ga0105243_100119955 223
52 3300025303 Ga0209051_1014555 Ga0209051_10145555 223
53 3300025304 Ga0209257_1000016 Ga0209257_1000016842 223
54 3300025304 Ga0209257_1023430 Ga0209257_10234304 223
55 3300025935 Ga0207709_10010913 Ga0207709_100109132 223
56 3300037471 Ga0395905_0003039 Ga0395905_0003039_15944_16654 223
57 3300042116 Ga0450912_000525 Ga0450912_000525_82_774 223
58 3300042120 Ga0450917_000597 Ga0450917_000597_377_1087 223
59 3300046471 Ga0495650_0016436 Ga0495650_0016436_2238_2909 223
60 3300046520 Ga0495637_0000318 Ga0495637_0000318_1559_2230 223
61 3300046530 Ga0495654_0000028 Ga0495654_0000028_76009_76680 223
62 3300049523 Ga0501300_014073 Ga0501300_014073_452_1150 223
63 3300049658 Ga0501211_000165 Ga0501211_000165_1753_2451 223
64 3300049669 Ga0501235_006822 Ga0501235_006822_420_1118 223
65 3300049764 Ga0501267_001121 Ga0501267_001121_341_1039 223
66 3300046452 Ga0495617_000821 Ga0495617_000821_10045_10719 224
67 3300046460 Ga0495638_0122524 Ga0495638_0122524_138_812 224
68 3300046463 Ga0495653_0000038 Ga0495653_0000038_42716_43390 224
69 3300046471 Ga0495650_0001997 Ga0495650_0001997_15218_15892 224
70 3300046492 Ga0495585_0002255 Ga0495585_0002255_4113_4787 224
71 3300046507 Ga0495606_0002019 Ga0495606_0002019_19934_20608 224
72 3300046512 Ga0495610_0000003 Ga0495610_0000003_328368_329042 224
73 3300046524 Ga0495648_0003770 Ga0495648_0003770_3091_3765 224
74 3300046524 Ga0495648_0007733 Ga0495648_0007733_2831_3505 224
75 3300046530 Ga0495654_0009846 Ga0495654_0009846_380_1054 224
76 3300046616 Ga0495668_0003574 Ga0495668_0003574_4585_5259 224
77 3300046665 Ga0495661_0075607 Ga0495661_0075607_327_1001 224
78 3300046692 Ga0495671_0000001 Ga0495671_0000001_341397_342071 224
79 3300046692 Ga0495671_0030071 Ga0495671_0030071_488_1162 224
80 3300046810 Ga0495660_0001549 Ga0495660_0001549_2756_3460 224
81 3300046810 Ga0495660_0016969 Ga0495660_0016969_2993_3667 224
82 3300047446 Ga0495679_016647 Ga0495679_016647_1787_2461 224
83 3300047469 Ga0495673_0000049 Ga0495673_0000049_260782_261456 224
84 3300047472 Ga0495686_0019148 Ga0495686_0019148_1174_1848 224
85 3300048929 Ga0496126_0284909 Ga0496126_0284909_299_1006 224
86 3300053145 Ga0500586_002289 Ga0500586_002289_3022_3696 224
87 iso_pu_bacteria 2857558681 2857559865 224
88 3300013104 Ga0157370_10097669 Ga0157370_100976693 225
89 iso_pu_bacteria 2857553236 2857554251 225
90 3300002774 JGI25150J39212_1011433 JGI25150J39212_10114332 226
91 3300003316 rootH1_10138230 rootH1_101382301 226
92 3300003323 rootH1_10244054 rootH1_102440541 226
93 3300003771 Ga0055526_1000114 Ga0055526_100011413 226
94 3300005458 Ga0070681_10000797 Ga0070681_1000079714 226
95 3300005530 Ga0070679_100152275 Ga0070679_1001522752 226
96 3300005563 Ga0068855_100112184 Ga0068855_1001121843 226
97 3300005563 Ga0068855_100156175 Ga0068855_1001561752 226
98 3300005564 Ga0070664_100037095 Ga0070664_1000370952 226
99 3300005577 Ga0068857_100167660 Ga0068857_1001676602 226
100 3300005614 Ga0068856_100004214 Ga0068856_10000421414 226
101 3300005616 Ga0068852_100403039 Ga0068852_1004030392 226
102 3300009036 Ga0105244_10003665 Ga0105244_100036652 226
103 3300013104 Ga0157370_10001155 Ga0157370_100011556 226
104 3300013104 Ga0157370_10346695 Ga0157370_103466952 226
105 3300013307 Ga0157372_10002247 Ga0157372_100022478 226
106 3300025245 Ga0207425_1000264 Ga0207425_10002648 226
107 3300025294 Ga0209025_1002375 Ga0209025_100237517 226
108 3300025295 Ga0209564_1000009 Ga0209564_1000009417 226
109 3300025297 Ga0209758_1000751 Ga0209758_10007518 226
110 3300025728 Ga0207655_1050923 Ga0207655_10509233 226
111 3300025912 Ga0207707_10064110 Ga0207707_100641102 226
112 3300025912 Ga0207707_10159753 Ga0207707_101597532 226
113 3300025917 Ga0207660_10089138 Ga0207660_100891383 226
114 3300025945 Ga0207679_10042532 Ga0207679_100425323 226
115 3300025949 Ga0207667_10057578 Ga0207667_100575784 226
116 3300025949 Ga0207667_10687566 Ga0207667_106875661 226
117 3300026078 Ga0207702_10022253 Ga0207702_100222535 226
118 3300026116 Ga0207674_10373106 Ga0207674_103731062 226
119 3300037418 Ga0395900_0383066 Ga0395900_0383066_79_786 226
120 3300037471 Ga0395905_0365003 Ga0395905_0365003_280_987 226
121 3300038443 Ga0395901_0083201 Ga0395901_0083201_2342_3049 226
122 3300046507 Ga0495606_0029504 Ga0495606_0029504_611_1291 226
123 3300046512 Ga0495610_0014167 Ga0495610_0014167_1376_2056 226
124 3300046512 Ga0495610_0108391 Ga0495610_0108391_541_1221 226
125 3300046558 Ga0495633_0007620 Ga0495633_0007620_3271_3951 226
126 3300046660 Ga0495625_0369575 Ga0495625_0369575_134_856 226
127 3300048927 Ga0496124_0040232 Ga0496124_0040232_1114_1797 226
128 3300053145 Ga0500586_000672 Ga0500586_000672_4113_4793 226
129 iso_pu_bacteria 2842711865 2842714281 226
130 iso_pu_bacteria 2919476304 2919478620 226
131 3300039447 Ga0436361_0285442 Ga0436361_0285442_5643_6338 227
132 3300046524 Ga0495648_0026226 Ga0495648_0026226_2279_2965 227
133 3300047469 Ga0495673_0000006 Ga0495673_0000006_848694_849377 227
134 3300047470 Ga0495681_0002682 Ga0495681_0002682_9107_9799 227
135 3300053118 Ga0500594_0002728 Ga0500594_0002728_1134_1820 227
136 iso_pu_bacteria 2884811622 2884811861 227
137 iso_pu_bacteria 2884836552 2884839499 227
138 iso_pu_bacteria 2884852848 2884856691 227
139 iso_pu_bacteria 2896154374 2896158037 227
140 3300005339 Ga0070660_100098116 Ga0070660_1000981161 228
141 3300005366 Ga0070659_100173959 Ga0070659_1001739592 228
142 3300005539 Ga0068853_100169105 Ga0068853_1001691052 228
143 3300025919 Ga0207657_10159497 Ga0207657_101594973 228
144 3300036401 Ga0373937_0171988 Ga0373937_0171988_1182_1877 228
145 3300046453 Ga0495627_000055 Ga0495627_000055_143286_143981 228
146 3300048917 Ga0496114_0031335 Ga0496114_0031335_3252_3944 228
147 3300049459 Ga0495678_000304 Ga0495678_000304_48002_48697 228
148 3300049822 Ga0501035_0405341 Ga0501035_0405341_219_929 228
149 3300049823 Ga0501044_0219322 Ga0501044_0219322_814_1521 228
150 iso_pu_bacteria 2904424332 2904426263 228
151 3300006946 Ga0079104_1009200 Ga0079104_10092002 229
152 3300015261 Ga0182006_1000026 Ga0182006_100002639 229
153 3300015265 Ga0182005_1000007 Ga0182005_1000007340 229
154 3300027111 Ga0209281_1012717 Ga0209281_10127173 229
155 3300046460 Ga0495638_0145066 Ga0495638_0145066_649_1341 229
156 3300046474 Ga0495605_0000044 Ga0495605_0000044_51908_52600 229
157 3300046501 Ga0495607_0017003 Ga0495607_0017003_2798_3508 229
158 3300046507 Ga0495606_0000229 Ga0495606_0000229_12615_13325 229
159 3300046507 Ga0495606_0015594 Ga0495606_0015594_2562_3254 229
160 3300046512 Ga0495610_0011415 Ga0495610_0011415_2371_3063 229
161 3300046512 Ga0495610_0025800 Ga0495610_0025800_332_1042 229
162 3300046522 Ga0495643_0004316 Ga0495643_0004316_3030_3722 229
163 3300046524 Ga0495648_0014388 Ga0495648_0014388_5051_5743 229
164 3300046538 Ga0495609_0001604 Ga0495609_0001604_3940_4656 229
165 3300046538 Ga0495609_0013080 Ga0495609_0013080_2801_3493 229
166 3300046542 Ga0495597_0006208 Ga0495597_0006208_2459_3151 229
167 3300046558 Ga0495633_0009319 Ga0495633_0009319_3843_4553 229
168 3300046616 Ga0495668_0000118 Ga0495668_0000118_93836_94546 229
169 3300046660 Ga0495625_0081744 Ga0495625_0081744_1101_1793 229
170 3300046692 Ga0495671_0039291 Ga0495671_0039291_288_980 229
171 3300046694 Ga0495649_0009338 Ga0495649_0009338_534_1226 229
172 3300046810 Ga0495660_0003988 Ga0495660_0003988_5584_6300 229
173 3300047320 Ga0495672_0003662 Ga0495672_0003662_4725_5417 229
174 3300047469 Ga0495673_0000024 Ga0495673_0000024_472590_473282 229
175 3300047472 Ga0495686_0010982 Ga0495686_0010982_2157_2867 229
176 3300048913 Ga0496110_0832400 Ga0496110_0832400_47_739 229
177 3300048914 Ga0496111_0459814 Ga0496111_0459814_198_890 229
178 3300048927 Ga0496124_0309880 Ga0496124_0309880_282_989 229
179 3300049459 Ga0495678_002757 Ga0495678_002757_3108_3800 229
180 3300009036 Ga0105244_10009135 Ga0105244_100091356 230
181 3300021361 Ga0213872_10000135 Ga0213872_1000013560 230
182 3300025728 Ga0207655_1009587 Ga0207655_10095876 230
183 3300046452 Ga0495617_001687 Ga0495617_001687_5851_6549 230
184 3300046512 Ga0495610_0014075 Ga0495610_0014075_2813_3520 230
185 3300046520 Ga0495637_0008933 Ga0495637_0008933_1802_2500 230
186 3300047470 Ga0495681_0022896 Ga0495681_0022896_2599_3306 230
187 3300048924 Ga0496121_0269834 Ga0496121_0269834_242_946 230
188 3300048928 Ga0496125_0000569 Ga0496125_0000569_29751_30455 230
189 3300049766 Ga0501269_000068 Ga0501269_000068_14893_15597 230
190 3300053125 Ga0500618_005290 Ga0500618_005290_902_1609 230
191 3300005288 Ga0065714_10156388 Ga0065714_101563882 231
192 3300005293 Ga0065715_10009000 Ga0065715_100090003 231
193 3300021361 Ga0213872_10000938 Ga0213872_1000093813 231
194 3300021361 Ga0213872_10061604 Ga0213872_100616042 231
195 3300039447 Ga0436361_0285806 Ga0436361_0285806_2899_3606 231
196 3300039447 Ga0436361_1105477 Ga0436361_1105477_2015_2722 231
197 3300046506 Ga0495583_0026572 Ga0495583_0026572_620_1324 231
198 3300047318 Ga0495636_0002652 Ga0495636_0002652_1863_2567 231
199 3300048906 Ga0496103_0006454 Ga0496103_0006454_2621_3322 231
200 3300002738 JGI25154J39366_1001413 JGI25154J39366_10014139 232
201 3300003322 rootL2_10014952 rootL2_100149525 232
202 3300003322 rootL2_10069998 rootL2_100699982 232
203 3300003763 Ga0055529_1000080 Ga0055529_100008073 232
204 3300003771 Ga0055526_1000106 Ga0055526_100010615 232
205 3300021361 Ga0213872_10010492 Ga0213872_100104924 232
206 3300025246 Ga0209646_1000010 Ga0209646_1000010297 232
207 3300025272 Ga0209455_1000037 Ga0209455_100003773 232
208 3300025295 Ga0209564_1000033 Ga0209564_1000033204 232
209 3300031711 Ga0265314_10082732 Ga0265314_100827322 232
210 3300039447 Ga0436361_1030790 Ga0436361_1030790_2986_3699 232
211 3300046457 Ga0495590_0000032 Ga0495590_0000032_3724_4428 232
212 3300046460 Ga0495638_0000190 Ga0495638_0000190_4699_5403 232
213 3300046471 Ga0495650_0000105 Ga0495650_0000105_132616_133353 232
214 3300046471 Ga0495650_0004484 Ga0495650_0004484_6365_7069 232
215 3300046501 Ga0495607_0003912 Ga0495607_0003912_3855_4565 232
216 3300046506 Ga0495583_0006779 Ga0495583_0006779_2037_2741 232
217 3300046507 Ga0495606_0003167 Ga0495606_0003167_1858_2607 232
218 3300046507 Ga0495606_0007149 Ga0495606_0007149_2518_3228 232
219 3300046524 Ga0495648_0000441 Ga0495648_0000441_39982_40686 232
220 3300046528 Ga0495642_0002788 Ga0495642_0002788_1876_2580 232
221 3300046538 Ga0495609_0043237 Ga0495609_0043237_511_1215 232
222 3300046557 Ga0495622_0001529 Ga0495622_0001529_4654_5358 232
223 3300046558 Ga0495633_0002043 Ga0495633_0002043_4210_4914 232
224 3300046558 Ga0495633_0002920 Ga0495633_0002920_9398_10141 232
225 3300046616 Ga0495668_0002636 Ga0495668_0002636_9855_10559 232
226 3300046660 Ga0495625_0004714 Ga0495625_0004714_7341_8045 232
227 3300046675 Ga0495657_0082958 Ga0495657_0082958_1111_1821 232
228 3300046692 Ga0495671_0249651 Ga0495671_0249651_59_763 232
229 3300046810 Ga0495660_0091271 Ga0495660_0091271_318_1022 232
230 3300047443 Ga0495687_003259 Ga0495687_003259_7105_7809 232
231 3300047443 Ga0495687_003338 Ga0495687_003338_6869_7573 232
232 3300049459 Ga0495678_010501 Ga0495678_010501_1230_1934 232

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01022

HTH_5

Bacterial regulatory protein, arsR family

18

65

0.94

PF12840

HTH_20

Helix-turn-helix domain

16

66

0.93

PF09339

HTH_IclR

IclR helix-turn-helix domain

21

67

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1u2w-assembly1.cif.gz_B crystal structure of the staphylococcus aureus pi258 cadc 0.9467 7 89
1u2w-assembly2.cif.gz_C crystal structure of the staphylococcus aureus pi258 cadc 0.9462 7 89
3f72-assembly1.cif.gz_B crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9423 7 89
3f72-assembly3.cif.gz_F crystal structure of the staphylococcus aureus pi258 cadc metal binding site 2 mutant 0.9358 7 89
4lb5-assembly1.cif.gz_A-2 crystal structure of pkz zalpha in complex with ds(cg)6 (hexagonal form) 0.9215 20 75
ID Description Score Start End Superfamily
1u2wC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9462 7 89 1.10.10.10
3f72B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9423 7 89 1.10.10.10
3f72F00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9358 7 89 1.10.10.10
4lb5A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9215 20 75 1.10.10.10
af_Q57824_147_206_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9192 17 74 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1B9B236-F1-model_v4 Transcriptional regulator 0.9634 7 89 GO:0003677
GO:0003700
GO:0046686
AF-W4RRZ2-F1-model_v4 Cadmium efflux system accessory protein 0.9615 7 89 GO:0003677
GO:0003700
GO:0046686
AF-A0A844LMX8-F1-model_v4 deleted 0.9586 9 89
AF-A0A0Q9YA42-F1-model_v4 deleted 0.9565 11 89
AF-A0A385EKR9-F1-model_v4 Cadmium resistance transcriptional regulatory protein CadC 0.9538 13 89 GO:0003677
GO:0003700
GO:0046686

Feature Viewer

pLDDT pTM Quality
80.01 0.67 Medium
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Predicted Structure (AlphaFold2)

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