F344898

General Info

Members Datasets Scaffolds Average Seq Length
232 161 464 281

Family's Representative Sequence

Representative Sequence 3300006038|Ga0075365_10009375|Ga0075365_100093753
Length 310
Sequence MESLLFTLVTLDPCPFPRGGIDTRARYSGRMTVHLLGAAEIRALASDLDVTPTKKLGQNFVVDANTVRKIVQVAGVTAGEHVVEVGPGLGSLTLAILETGASVVAVEIDHRLAERLPATARAHGVRDGMLRVVDADALRVTTLPGDPTVLVANLPYNVSVPVLLHFLESFAHLQRGVVMVQAEVGERLAAPPGSKVYGAPSVKAAWYGRWRLAGTVSRQVFWPVPNVDSVLVGFHRDLEARADEAERLRTFRLVDAAFQQRRKMLRQALSNELGGSAAAASAVLERAGVDPTERGEQLTVDDFHRIALAL

Samples

Sample ID Description Type Environment
1 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
4 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
10 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
11 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
12 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
13 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
14 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
15 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
18 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
19 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
20 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
21 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
22 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
23 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
24 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
25 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
33 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
34 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
35 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
36 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
37 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
38 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
39 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
40 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
41 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
42 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
43 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
44 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
45 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
46 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
47 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
48 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
49 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
50 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
51 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
52 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
53 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
54 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
55 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
56 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
57 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
58 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
59 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
60 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
61 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
62 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
63 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
64 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
65 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
66 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
67 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
68 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
69 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
70 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
71 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
74 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
75 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
76 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
77 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
78 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
79 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
80 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
81 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
82 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
83 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
84 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
85 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
86 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
87 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
88 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
89 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
90 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
91 2643221546 Microbacterium sp. Root53 Isolate Unclassified
92 2643221549 Agromyces sp. Root1464 Isolate Unclassified
93 2643221566 Microbacterium sp. Root166 Isolate Unclassified
94 2643221572 Leifsonia sp. Root60 Isolate Unclassified
95 2643221575 Microbacterium sp. Root61 Isolate Unclassified
96 2643221597 Microbacterium sp. Root180 Isolate Unclassified
97 2643221616 Leifsonia sp. Root227 Isolate Unclassified
98 2643221619 Agromyces sp. Root81 Isolate Unclassified
99 2643221649 Leifsonia sp. Root4 Isolate Unclassified
100 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
101 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
102 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
103 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
104 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
105 2773857759 Microbacterium sp. 1294 Isolate Unclassified
106 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
107 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
108 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
109 2808606372 Agromyces sp. 23-23 Isolate Unclassified
110 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
111 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
112 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
113 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
114 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
115 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
116 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
117 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
118 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
119 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
120 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
121 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
122 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
123 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
124 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
125 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
126 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
127 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
128 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
129 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
130 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
131 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
132 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
133 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
134 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
135 2919069694 Microbacterium sp. 1154 Isolate Unclassified
136 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
137 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
138 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
139 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
140 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
141 2928153084 Leifsonia sp. 563 Isolate Unclassified
142 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
143 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
144 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
145 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
146 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
147 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
148 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
149 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
150 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
151 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
152 2977236895 Microbacterium testaceum SORGH_AS 426 Isolate Unclassified
153 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
154 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
155 2984542743 Microbacterium sp. SORGH_AS454 Isolate Aerial Root
156 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
157 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
158 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
159 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
160 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
161 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 66.81
Metatranscriptomes 1.72
Isolates 31.47

Biome Distribution

Category Percentage (%)
Aerial Root 0.86
Bulb 0
Endosphere 13.79
Nodule 0
Rhizoplane 8.62
Rhizosphere 37.5
Stem 0
Stem Tuber 0.43
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075365_10009375 3300006038 Bacteria 5622
2 JGI24735J21928_10002332 3300002067 Bacteria 6614
3 JGI25164J39214_1000750 3300002772 Bacteria 12063
4 JGI25165J46597_1000004 3300003214 Bacteria 667510
5 Ga0006562J51391_1031830 3300003578 Bacteria 5650
6 Ga0006562J51391_1049573 3300003578 Bacteria 5700
7 Ga0006562J51391_1049574 3300003578 Bacteria 4660
8 Ga0065714_10009232 3300005288 Bacteria 3327
9 Ga0070658_10000034 3300005327 Bacteria 146880
10 Ga0070658_10035615 3300005327 Bacteria 4010
11 Ga0070660_100057633 3300005339 Bacteria 3010
12 Ga0070665_100114461 3300005548 Bacteria 2700
13 Ga0075365_10027515 3300006038 Bacteria 3619
14 Ga0075364_10020822 3300006051 Bacteria 4128
15 Ga0075364_10033570 3300006051 Bacteria 3306
16 Ga0075364_10079570 3300006051 Bacteria 2166
17 Ga0075369_10018194 3300006186 Bacteria 2858
18 Ga0105244_10006443 3300009036 Bacteria 7598
19 Ga0105244_10014730 3300009036 Bacteria 4514
20 Ga0105244_10029375 3300009036 Bacteria 2939
21 Ga0105243_10156371 3300009148 Bacteria 1961
22 Ga0157371_10013807 3300013102 Bacteria 6119
23 Ga0157370_10013412 3300013104 Bacteria 8442
24 Ga0157369_10003659 3300013105 Bacteria 18245
25 Ga0157369_10491962 3300013105 Bacteria 1269
26 Ga0171462_1004 3300013250 Bacteria 678877
27 Ga0163162_10098218 3300013306 Bacteria 3017
28 Ga0157380_10072679 3300014326 Bacteria 2786
29 Ga0206353_11534688 3300020082 Bacteria 9566
30 Ga0207427_100010 3300025231 Bacteria 648610
31 Ga0209437_100673 3300025233 Bacteria 18629
32 Ga0209677_102700 3300025253 Bacteria 6389
33 Ga0209233_1000001 3300025261 Bacteria 2992747
34 Ga0209455_1001810 3300025272 Bacteria 8980
35 Ga0207655_1003406 3300025728 Bacteria 11865
36 Ga0207655_1004521 3300025728 Bacteria 9830
37 Ga0207705_10000001 3300025909 Bacteria 2061880
38 Ga0207705_10028173 3300025909 Bacteria 4005
39 Ga0207657_10065683 3300025919 Bacteria 3092
40 Ga0207709_10056669 3300025935 Bacteria 2426
41 Ga0207709_10098203 3300025935 Bacteria 1930
42 Ga0207667_10115789 3300025949 Bacteria 2763
43 Ga0268265_10309509 3300028380 Bacteria 1426
44 Ga0307514_10001502 3300031649 Bacteria 28063
45 Ga0307413_10075501 3300031824 Bacteria 2140
46 Ga0307410_10212021 3300031852 Bacteria 1485
47 Ga0307412_10311423 3300031911 Bacteria 1249
48 Ga0307409_100372062 3300031995 Bacteria 1355
49 Ga0307416_100209803 3300032002 Bacteria 1857
50 Ga0307416_100413948 3300032002 Bacteria 1390
51 Ga0307414_10097809 3300032004 Bacteria 2200
52 Ga0307414_10139168 3300032004 Bacteria 1898
53 Ga0307414_10344310 3300032004 Bacteria 1277
54 Ga0395899_0059016 3300037312 Bacteria 2828
55 Ga0395900_0171412 3300037418 Bacteria 2209
56 Ga0395898_0143917 3300037466 Bacteria 2282
57 Ga0439465_0043711 3300041413 Bacteria 1454
58 Ga0451789_1180299 3300041443 Bacteria 1107
59 Ga0451791_1121362 3300041451 Bacteria 1231
60 Ga0451793_1796304 3300041452 Bacteria 2108
61 Ga0466968_0008748 3300044735 Bacteria 3882
62 Ga0466970_0064232 3300044765 Bacteria 1968
63 Ga0466960_0012720 3300044901 Bacteria 3558
64 Ga0495672_0011082 3300047320 Bacteria 6383
65 Ga0495626_0015454 3300048091 Bacteria 3906
66 Ga0496101_0036773 3300048904 Bacteria 3468
67 Ga0496102_0178833 3300048905 Bacteria 1998
68 Ga0496104_0091704 3300048907 Bacteria 2905
69 Ga0496104_0237408 3300048907 Bacteria 1735
70 Ga0496104_0275904 3300048907 Bacteria 1594
71 Ga0496105_0051450 3300048908 Bacteria 3404
72 Ga0496107_0064506 3300048910 Bacteria 2655
73 Ga0496109_0081029 3300048912 Bacteria 2991
74 Ga0496109_0081706 3300048912 Bacteria 2978
75 Ga0496110_0056858 3300048913 Bacteria 3443
76 Ga0496112_0160053 3300048915 Bacteria 2218
77 Ga0496113_0023285 3300048916 Bacteria 4391
78 Ga0496113_0129226 3300048916 Bacteria 1981
79 Ga0496113_0273102 3300048916 Bacteria 1351
80 Ga0496114_0192578 3300048917 Bacteria 1784
81 Ga0496115_0082743 3300048918 Bacteria 2616
82 Ga0496115_0112523 3300048918 Bacteria 2236
83 Ga0496117_0000063 3300048920 Bacteria 254446
84 Ga0496117_0000321 3300048920 Bacteria 84088
85 Ga0496117_0001086 3300048920 Bacteria 41154
86 Ga0496117_0001112 3300048920 Bacteria 40555
87 Ga0496117_0026764 3300048920 Bacteria 4505
88 Ga0496118_0000739 3300048921 Bacteria 52785
89 Ga0496118_0017800 3300048921 Bacteria 6448
90 Ga0496118_0023590 3300048921 Bacteria 5339
91 Ga0496118_0031608 3300048921 Bacteria 4383
92 Ga0496119_0000831 3300048922 Bacteria 41136
93 Ga0496119_0001605 3300048922 Bacteria 26854
94 Ga0496119_0002091 3300048922 Bacteria 22550
95 Ga0496119_0003624 3300048922 Bacteria 15883
96 Ga0496119_0015691 3300048922 Bacteria 5809
97 Ga0496119_0089872 3300048922 Bacteria 1748
98 Ga0496120_0001256 3300048923 Bacteria 31882
99 Ga0496120_0001936 3300048923 Bacteria 22752
100 Ga0496120_0003974 3300048923 Bacteria 12853
101 Ga0496120_0042058 3300048923 Bacteria 2671
102 Ga0496120_0057405 3300048923 Bacteria 2191
103 Ga0496122_0000036 3300048925 Bacteria 312598
104 Ga0496122_0000059 3300048925 Bacteria 247170
105 Ga0496122_0001735 3300048925 Bacteria 33820
106 Ga0496122_0004111 3300048925 Bacteria 18416
107 Ga0496122_0013857 3300048925 Bacteria 7850
108 Ga0496122_0024936 3300048925 Bacteria 5218
109 Ga0496122_0054553 3300048925 Bacteria 3000
110 Ga0496123_0000011 3300048926 Bacteria 493925
111 Ga0496123_0000157 3300048926 Bacteria 137212
112 Ga0496123_0000964 3300048926 Bacteria 44426
113 Ga0496123_0002798 3300048926 Bacteria 20726
114 Ga0496123_0054588 3300048926 Bacteria 2629
115 Ga0496123_0063206 3300048926 Bacteria 2367
116 Ga0496123_0096794 3300048926 Bacteria 1731
117 Ga0496123_0169454 3300048926 Bacteria 1154
118 Ga0496124_0000181 3300048927 Bacteria 124426
119 Ga0496124_0000389 3300048927 Bacteria 80434
120 Ga0496124_0007479 3300048927 Bacteria 11602
121 Ga0496124_0008012 3300048927 Bacteria 11117
122 Ga0496124_0215785 3300048927 Bacteria 1447
123 Ga0496124_0422325 3300048927 Bacteria 918
124 Ga0496125_0000167 3300048928 Bacteria 147134
125 Ga0496125_0002505 3300048928 Bacteria 23744
126 Ga0496125_0005699 3300048928 Bacteria 13732
127 Ga0496125_0038317 3300048928 Bacteria 4151
128 Ga0496126_0003358 3300048929 Bacteria 20296
129 Ga0496126_0039019 3300048929 Bacteria 4412
130 Ga0496126_0043875 3300048929 Bacteria 4121
131 Ga0496126_0125483 3300048929 Bacteria 2222
132 Ga0496126_0131472 3300048929 Bacteria 2162
133 Ga0501033_0040032 3300049570 Bacteria 3499
134 Ga0501033_0115746 3300049570 Bacteria 1948
135 Ga0501043_0050046 3300049579 Bacteria 3285
136 Ga0501047_0071401 3300049581 Bacteria 3342
137 Ga0501070_0001995 3300049586 Bacteria 17939
138 Ga0501083_0000198 3300049744 Bacteria 38610
139 Ga0501083_0011526 3300049744 Bacteria 6202
140 Ga0501035_0329661 3300049822 Bacteria 1281
141 nmdc:mga00v17_86366_c1 3300050491 Bacteria 1966
142 nmdc:mga0yw44_8050_c1 3300050492 Bacteria 5228
143 nmdc:mga06z11_6286_c1 3300050494 Bacteria 4820
144 nmdc:mga0sz30_52354_c1 3300050516 Bacteria 1733
145 Ga0500635_0000155 3300053080 Bacteria 37961
146 Ga0500643_000092 3300053087 Bacteria 93617
147 Ga0500650_0001082 3300053098 Bacteria 7842
148 Ga0500559_0000052 3300053136 Bacteria 91218
149 Ga0500559_0000872 3300053136 Bacteria 19356
150 Ga0500573_0000031 3300053140 Bacteria 134098
151 Ga0500573_0003996 3300053140 Bacteria 7702
152 Ga0500573_0010656 3300053140 Bacteria 5134
153 Ga0500573_0040663 3300053140 Bacteria 2685
154 Ga0500573_0048415 3300053140 Bacteria 2447
155 Ga0500573_0082845 3300053140 Bacteria 1821
156 Ga0500577_0002584 3300053142 Bacteria 4634
157 Ga0500577_0004184 3300053142 Bacteria 3795
158 Ga0500616_0000218 3300053153 Bacteria 90063
159 Ga0500645_006455 3300053730 Bacteria 4185
160 2587864288 2585428094 Bacteria 3604039
161 2588108642 2585428157 Bacteria 3018951
162 2643752972 2643221546 Bacteria 2910897
163 2643769819 2643221549 Bacteria 4042819
164 2643849169 2643221566 Bacteria 3460379
165 2643875931 2643221572 Bacteria 3614809
166 2643886077 2643221575 Bacteria 4022601
167 2643995385 2643221597 Bacteria 3347721
168 2644096795 2643221616 Bacteria 4066575
169 2644114473 2643221619 Bacteria 4158469
170 2644278358 2643221649 Bacteria 3867359
171 2644382986 2643221669 Bacteria 3611286
172 2723641420 2721755702 Bacteria 4373124
173 2753303121 2751185788 Bacteria 4541048
174 2758226621 2757320536 Bacteria 3629334
175 2774381766 2773857758 Bacteria 3592392
176 2774384005 2773857759 Bacteria 2963774
177 2774398905 2773857763 Bacteria 4180068
178 2808630689 2808606306 Bacteria 3608896
179 2808886099 2808606368 Bacteria 3174172
180 2808901363 2808606372 Bacteria 4649509
181 2812323823 2811994872 Bacteria 4121241
182 2821270518 2821268502 Bacteria 3750023
183 2833711506 2833709550 Bacteria 4008291
184 2844843015 2844841374 Bacteria 3917147
185 2844854710 2844852863 Bacteria 3849151
186 2852644742 2852643534 Bacteria 3013378
187 2852649773 2852646457 Bacteria 3408613
188 2857722221 2857720070 Bacteria 3189373
189 2857730428 2857729791 Bacteria 4040535
190 2857734147 2857733635 Bacteria 3532004
191 2862995096 2862993130 Bacteria 3860849
192 2870622591 2870622029 Bacteria 3643329
193 2870630863 2870628048 Bacteria 3696012
194 2884765993 2884763398 Bacteria 4091164
195 2895660107 2895660088 Bacteria 3782833
196 2904431844 2904430863 Bacteria 3486923
197 2904504358 2904501621 Bacteria 3401437
198 2904511489 2904509784 Bacteria 3520416
199 2906803278 2906799679 Bacteria 4031749
200 2908676580 2908674828 Bacteria 3382763
201 2908679795 2908678064 Bacteria 3482747
202 2909077296 2909074476 Bacteria 3436050
203 2919041694 2919039151 Bacteria 3391018
204 2919042453 2919042368 Bacteria 3905917
205 2919058985 2919055335 Bacteria 3875751
206 2919073053 2919069694 Bacteria 3622919
207 2919446940 2919443155 Bacteria 4072969
208 2919525108 2919523602 Bacteria 3788128
209 2928091665 2928090899 Bacteria 3158267
210 2928107822 2928104781 Bacteria 3877447
211 2928123670 2928121344 Bacteria 3972376
212 2928156689 2928153084 Bacteria 4020257
213 2928502937 2928500415 Bacteria 3384541
214 2935410843 2935409751 Bacteria 4179611
215 2939659039 2939657138 Bacteria 3740283
216 2939663001 2939660829 Bacteria 3784848
217 2945968449 2945968032 Bacteria 4111363
218 2964328781 2964326757 Bacteria 3290868
219 2966925639 2966924647 Bacteria 3268643
220 2974296867 2974294766 Bacteria 3767688
221 2974326899 2974324384 Bacteria 3750535
222 2977231918 2977228692 Bacteria 3450105
223 2977237276 2977236895 Bacteria 3569373
224 2977254469 2977251589 Bacteria 2952848
225 2977267230 2977264416 Bacteria 3750737
226 2984544937 2984542743 Bacteria 3569378
227 2984581582 2984580707 Bacteria 3351387
228 8004213633 8004212874 Bacteria 2861420
229 8016257063 8016254467 Bacteria 3797036
230 8045830695 8045830549 Bacteria 4444727
231 8046353496 8046352972 Bacteria 3613806
232 8057347770 8057345674 Bacteria 4160394
233 Ga0075365_10009375
234 JGI24735J21928_10002332
235 JGI25164J39214_1000750
236 JGI25165J46597_1000004
237 Ga0006562J51391_1031830
238 Ga0006562J51391_1049573
239 Ga0006562J51391_1049574
240 Ga0065714_10009232
241 Ga0070658_10000034
242 Ga0070658_10035615
243 Ga0070660_100057633
244 Ga0070665_100114461
245 Ga0075365_10027515
246 Ga0075364_10020822
247 Ga0075364_10033570
248 Ga0075364_10079570
249 Ga0075369_10018194
250 Ga0105244_10006443
251 Ga0105244_10014730
252 Ga0105244_10029375
253 Ga0105243_10156371
254 Ga0157371_10013807
255 Ga0157370_10013412
256 Ga0157369_10003659
257 Ga0157369_10491962
258 Ga0171462_1004
259 Ga0163162_10098218
260 Ga0157380_10072679
261 Ga0206353_11534688
262 Ga0207427_100010
263 Ga0209437_100673
264 Ga0209677_102700
265 Ga0209233_1000001
266 Ga0209455_1001810
267 Ga0207655_1003406
268 Ga0207655_1004521
269 Ga0207705_10000001
270 Ga0207705_10028173
271 Ga0207657_10065683
272 Ga0207709_10056669
273 Ga0207709_10098203
274 Ga0207667_10115789
275 Ga0268265_10309509
276 Ga0307514_10001502
277 Ga0307413_10075501
278 Ga0307410_10212021
279 Ga0307412_10311423
280 Ga0307409_100372062
281 Ga0307416_100209803
282 Ga0307416_100413948
283 Ga0307414_10097809
284 Ga0307414_10139168
285 Ga0307414_10344310
286 Ga0395899_0059016
287 Ga0395900_0171412
288 Ga0395898_0143917
289 Ga0439465_0043711
290 Ga0451789_1180299
291 Ga0451791_1121362
292 Ga0451793_1796304
293 Ga0466968_0008748
294 Ga0466970_0064232
295 Ga0466960_0012720
296 Ga0495672_0011082
297 Ga0495626_0015454
298 Ga0496101_0036773
299 Ga0496102_0178833
300 Ga0496104_0091704
301 Ga0496104_0237408
302 Ga0496104_0275904
303 Ga0496105_0051450
304 Ga0496107_0064506
305 Ga0496109_0081029
306 Ga0496109_0081706
307 Ga0496110_0056858
308 Ga0496112_0160053
309 Ga0496113_0023285
310 Ga0496113_0129226
311 Ga0496113_0273102
312 Ga0496114_0192578
313 Ga0496115_0082743
314 Ga0496115_0112523
315 Ga0496117_0000063
316 Ga0496117_0000321
317 Ga0496117_0001086
318 Ga0496117_0001112
319 Ga0496117_0026764
320 Ga0496118_0000739
321 Ga0496118_0017800
322 Ga0496118_0023590
323 Ga0496118_0031608
324 Ga0496119_0000831
325 Ga0496119_0001605
326 Ga0496119_0002091
327 Ga0496119_0003624
328 Ga0496119_0015691
329 Ga0496119_0089872
330 Ga0496120_0001256
331 Ga0496120_0001936
332 Ga0496120_0003974
333 Ga0496120_0042058
334 Ga0496120_0057405
335 Ga0496122_0000036
336 Ga0496122_0000059
337 Ga0496122_0001735
338 Ga0496122_0004111
339 Ga0496122_0013857
340 Ga0496122_0024936
341 Ga0496122_0054553
342 Ga0496123_0000011
343 Ga0496123_0000157
344 Ga0496123_0000964
345 Ga0496123_0002798
346 Ga0496123_0054588
347 Ga0496123_0063206
348 Ga0496123_0096794
349 Ga0496123_0169454
350 Ga0496124_0000181
351 Ga0496124_0000389
352 Ga0496124_0007479
353 Ga0496124_0008012
354 Ga0496124_0215785
355 Ga0496124_0422325
356 Ga0496125_0000167
357 Ga0496125_0002505
358 Ga0496125_0005699
359 Ga0496125_0038317
360 Ga0496126_0003358
361 Ga0496126_0039019
362 Ga0496126_0043875
363 Ga0496126_0125483
364 Ga0496126_0131472
365 Ga0501033_0040032
366 Ga0501033_0115746
367 Ga0501043_0050046
368 Ga0501047_0071401
369 Ga0501070_0001995
370 Ga0501083_0000198
371 Ga0501083_0011526
372 Ga0501035_0329661
373 nmdc:mga00v17_86366_c1
374 nmdc:mga0yw44_8050_c1
375 nmdc:mga06z11_6286_c1
376 nmdc:mga0sz30_52354_c1
377 Ga0500635_0000155
378 Ga0500643_000092
379 Ga0500650_0001082
380 Ga0500559_0000052
381 Ga0500559_0000872
382 Ga0500573_0000031
383 Ga0500573_0003996
384 Ga0500573_0010656
385 Ga0500573_0040663
386 Ga0500573_0048415
387 Ga0500573_0082845
388 Ga0500577_0002584
389 Ga0500577_0004184
390 Ga0500616_0000218
391 Ga0500645_006455
392 2587864288
393 2588108642
394 2643752972
395 2643769819
396 2643849169
397 2643875931
398 2643886077
399 2643995385
400 2644096795
401 2644114473
402 2644278358
403 2644382986
404 2723641420
405 2753303121
406 2758226621
407 2774381766
408 2774384005
409 2774398905
410 2808630689
411 2808886099
412 2808901363
413 2812323823
414 2821270518
415 2833711506
416 2844843015
417 2844854710
418 2852644742
419 2852649773
420 2857722221
421 2857730428
422 2857734147
423 2862995096
424 2870622591
425 2870630863
426 2884765993
427 2895660107
428 2904431844
429 2904504358
430 2904511489
431 2906803278
432 2908676580
433 2908679795
434 2909077296
435 2919041694
436 2919042453
437 2919058985
438 2919073053
439 2919446940
440 2919525108
441 2928091665
442 2928107822
443 2928123670
444 2928156689
445 2928502937
446 2935410843
447 2939659039
448 2939663001
449 2945968449
450 2964328781
451 2966925639
452 2974296867
453 2974326899
454 2977231918
455 2977237276
456 2977254469
457 2977267230
458 2984544937
459 2984581582
460 8004213633
461 8016257063
462 8045830695
463 8046353496
464 8057347770

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00398

RrnaAD

Ribosomal RNA adenine dimethylase

51

310

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jxj-assembly1.cif.gz_A crystal structure of ribosomal rna small subunit methyltransferase a from rickettsia bellii determined by iodide sad phasing 0.9322 31 279
4jxj-assembly1.cif.gz_A crystal structure of ribosomal rna small subunit methyltransferase a from rickettsia bellii determined by iodide sad phasing 0.9176 31 279
3tqs-assembly2.cif.gz_B structure of the dimethyladenosine transferase (ksga) from coxiella burnetii 0.8988 29 279
6ifv-assembly2.cif.gz_B c-terminal truncated ksga from bacillus subtilis 168 0.8864 5 209
3tqs-assembly2.cif.gz_B structure of the dimethyladenosine transferase (ksga) from coxiella burnetii 0.885 29 279
ID Description Score Start End Superfamily
af_P9WH07_6_221_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9874 4 210 3.40.50.150
af_Q54QK7_28_214_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9428 24 212 3.40.50.150
af_P9WH07_6_221_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9423 4 210 3.40.50.150
af_Q54QK7_28_214_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9283 24 212 3.40.50.150
af_Q10838_7_172_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9153 25 210 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A399SMV7-F1-model_v4 16S rRNA (Adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA (EC 2.1.1.182) 0.9852 36 280 GO:0003723
GO:0005829
GO:0052908
AF-A0A3N1J2K5-F1-model_v4 Ribosomal RNA small subunit methyltransferase A (EC 2.1.1.182) (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase) (16S rRNA dimethyladenosine transferase) (16S rRNA dimethylase) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) 0.9789 4 280 GO:0003723
GO:0005829
GO:0052908
AF-A0A3D2NG68-F1-model_v4 16S rRNA (Adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 0.9748 4 183 GO:0000179
GO:0003723
GO:0005829
AF-A0A1C4KSZ8-F1-model_v4 deleted 0.9723 4 280
AF-Q5YPY6-F1-model_v4 Ribosomal RNA small subunit methyltransferase A (EC 2.1.1.182) (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase) (16S rRNA dimethyladenosine transferase) (16S rRNA dimethylase) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) 0.9711 6 281 GO:0003723
GO:0005829
GO:0052908

Map