F343344

General Info

Members Datasets Scaffolds Average Seq Length
230 187 460 431

Family's Representative Sequence

Representative Sequence 3300046531|Ga0495665_0038479|Ga0495665_0038479_90_1508
Length 472
Sequence VLVRARTGSDDGPSRIAYREAELTEPWVALEPGADPVERVRILRRAHEAFTEAGTVPRPVRSVVADSWRRSARAGVAPDGTARVELTDGDLGSYRAEHPLARVMPLFRELMGTFAADGEHLLAVCDAQGRLLWVEGHPATRRQAGRMNFVPGARWSETSVGTNAPGTAVVVDRPVQVFAAEHFIRRVQPWTCAAAPVHDPRTGRVLGAVDITGGDGLAHPHSLGFVQAVARAAESQLALLAPAESAADTLELTALGRDEAQLVAGGRKARLSRRHSEILVLLARHPEGLSGDELLCALYEDESVTPVTLRAELTRLRRVLGPGLLGSRPYRLMAPVESDVAVVERRLGTGAVTAAAAAYAGPLLPGSGAPAVVRLRRRLADGLRTALIARRDPDLLADWARAPWGEDDLDVWRALAAVRPTATVRARLEGLEREQAAPPGRPYPAALAARCRSVAGEGRPDSSATSLQRPRS

Samples

Sample ID Description Type Environment
1 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
2 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
3 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
4 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
5 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
6 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
7 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
8 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
9 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
10 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
11 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
13 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
14 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
15 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
16 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
17 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
18 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
19 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
20 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
21 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
22 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
23 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
24 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
25 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
26 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
27 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
28 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
29 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
30 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
31 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
32 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
33 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
34 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
35 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
36 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
37 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
38 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
39 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
40 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
41 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
42 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
43 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
44 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
45 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
46 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
47 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
48 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
49 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
50 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
51 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
52 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
53 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
54 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
55 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
56 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
57 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
58 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
59 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
60 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
61 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
62 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
63 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
64 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
65 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
66 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
67 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
68 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
69 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
70 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
71 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
72 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
73 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
74 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
75 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
76 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
77 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
78 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
79 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
80 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
81 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
82 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
83 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
84 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
85 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
95 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
96 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
97 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
98 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
99 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
100 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
101 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
102 2501939600 Micromonospora sp. L5 Isolate Unclassified
103 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
104 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
105 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
106 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
107 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
108 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
109 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
110 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
111 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
112 2643221578 Streptomyces sp. Root63 Isolate Unclassified
113 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
114 2643221647 Streptomyces sp. Root369 Isolate Unclassified
115 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
116 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
117 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
118 2643221714 Streptomyces sp. Root264 Isolate Unclassified
119 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
120 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
121 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
122 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
123 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
124 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
125 2808606448 Streptomyces sp. 193411 Isolate Unclassified
126 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
127 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
128 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
129 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
130 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
131 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
132 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
133 2858868258 Micromonospora sp. MH33 Isolate Unclassified
134 2858882152 Micromonospora noduli MED15 Isolate Nodule
135 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
136 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
137 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
138 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
139 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
140 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
141 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
142 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
143 2862574272 Streptomyces sp. AcE210 Isolate Nodule
144 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
145 2867302475 Micromonospora globbae WPS1-2 Isolate Unclassified
146 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
147 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
148 2867428634 Streptomyces sp. RP5T Isolate Unclassified
149 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
150 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
151 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
152 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
153 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
154 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
155 2902582711 Micromonospora sp. AP08 Isolate Unclassified
156 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
157 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
158 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
159 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
160 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
161 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
162 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
163 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
164 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
165 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
166 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
167 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
168 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
169 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
170 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
171 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
172 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
173 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
174 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
175 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
176 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
177 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
178 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
179 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
180 649633069 Micromonospora sp. L5 Isolate Unclassified
181 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
182 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
183 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
184 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
185 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
186 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
187 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 62.61
Metatranscriptomes 0
Isolates 37.39

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.04
Nodule 2.17
Rhizoplane 0
Rhizosphere 66.96
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495665_0038479 3300046531 Bacteria 2550
2 Ga0068853_100117705 3300005539 Bacteria 2367
3 Ga0081455_10194671 3300005937 Bacteria 1523
4 Ga0075363_100015393 3300006048 Bacteria 3758
5 Ga0105245_10019477 3300009098 Bacteria 5945
6 Ga0105248_10273763 3300009177 Bacteria 1901
7 Ga0105238_10188871 3300009551 Bacteria 2037
8 Ga0182008_10003575 3300014497 Bacteria 9317
9 Ga0182007_10003274 3300015262 Bacteria 7696
10 Ga0183367_1003 3300015688 Bacteria 814276
11 Ga0207711_10157346 3300025941 Bacteria 2054
12 Ga0207639_10028728 3300026041 Bacteria 4063
13 Ga0307517_10001103 3300028786 Bacteria 45619
14 Ga0307515_10002955 3300028794 Bacteria 36045
15 Ga0307515_10201766 3300028794 Bacteria 1862
16 Ga0307511_10000334 3300030521 Bacteria 50044
17 Ga0307511_10100825 3300030521 Bacteria 1897
18 Ga0307512_10001670 3300030522 Bacteria 30513
19 Ga0307512_10063563 3300030522 Bacteria 2820
20 Ga0307513_10001865 3300031456 Bacteria 29946
21 Ga0307509_10024865 3300031507 Bacteria 6700
22 Ga0307509_10030629 3300031507 Bacteria 5948
23 Ga0307508_10010556 3300031616 Bacteria 8451
24 Ga0307508_10071453 3300031616 Bacteria 3044
25 Ga0307514_10014049 3300031649 Bacteria 6633
26 Ga0307516_10002861 3300031730 Bacteria 22717
27 Ga0307518_10020369 3300031838 Bacteria 4766
28 Ga0307510_10015027 3300033180 Bacteria 9155
29 Ga0307510_10116832 3300033180 Bacteria 2387
30 Ga0307510_10154477 3300033180 Bacteria 1905
31 Ga0395898_0008398 3300037466 Bacteria 10922
32 Ga0395898_0037296 3300037466 Bacteria 4823
33 Ga0395898_0065955 3300037466 Bacteria 3509
34 Ga0451841_1317346 3300041498 Bacteria 2000
35 Ga0451853_0585705 3300041512 Bacteria 5749
36 Ga0439448_0015327 3300042005 Bacteria 2320
37 Ga0439457_000418 3300042014 Bacteria 12195
38 Ga0450894_000062 3300042131 Bacteria 16968
39 Ga0450898_001044 3300042134 Bacteria 3508
40 Ga0450903_000015 3300042138 Bacteria 34074
41 Ga0439458_0000287 3300042157 Bacteria 12535
42 Ga0466972_0010837 3300044658 Bacteria 4576
43 Ga0466972_0028995 3300044658 Bacteria 2726
44 Ga0466965_0004393 3300044683 Bacteria 6268
45 Ga0466961_0004290 3300044693 Bacteria 8928
46 Ga0466963_0000082 3300044694 Bacteria 32737
47 Ga0466964_0000995 3300044706 Bacteria 9412
48 Ga0466957_0001802 3300044842 Bacteria 11285
49 Ga0466960_0016403 3300044901 Bacteria 3213
50 Ga0466967_0000758 3300045976 Bacteria 16669
51 Ga0466967_0115465 3300045976 Bacteria 2472
52 Ga0495617_014306 3300046452 Bacteria 2696
53 Ga0495603_0000412 3300046455 Bacteria 23683
54 Ga0495603_0000853 3300046455 Bacteria 17467
55 Ga0495603_0004797 3300046455 Bacteria 8080
56 Ga0495629_0000886 3300046459 Bacteria 24144
57 Ga0495629_0004730 3300046459 Bacteria 10202
58 Ga0495629_0018334 3300046459 Bacteria 5010
59 Ga0495629_0044139 3300046459 Bacteria 3129
60 Ga0495638_0025187 3300046460 Bacteria 3871
61 Ga0495651_0051270 3300046462 Bacteria 3182
62 Ga0495582_0016720 3300046473 Bacteria 4017
63 Ga0495664_0005382 3300046477 Bacteria 7025
64 Ga0495585_0026432 3300046492 Bacteria 3314
65 Ga0495594_0001881 3300046499 Bacteria 10923
66 Ga0495583_0011636 3300046506 Bacteria 5040
67 Ga0495583_0044609 3300046506 Bacteria 2055
68 Ga0495606_0012472 3300046507 Bacteria 6810
69 Ga0495618_0106970 3300046514 Bacteria 1791
70 Ga0495620_0002993 3300046515 Bacteria 9723
71 Ga0495628_0044087 3300046516 Bacteria 3550
72 Ga0495630_0180160 3300046517 Bacteria 1611
73 Ga0495631_0001286 3300046518 Bacteria 15409
74 Ga0495643_0006360 3300046522 Bacteria 7800
75 Ga0495652_0022281 3300046529 Bacteria 5622
76 Ga0495640_0035107 3300046533 Bacteria 3551
77 Ga0495622_0009251 3300046557 Bacteria 4560
78 Ga0495622_0060736 3300046557 Bacteria 1750
79 Ga0495634_0039756 3300046642 Bacteria 3201
80 Ga0495611_0049395 3300046648 Bacteria 1893
81 Ga0495625_0009696 3300046660 Bacteria 8020
82 Ga0495625_0048612 3300046660 Bacteria 3053
83 Ga0495635_0017976 3300046663 Bacteria 4936
84 Ga0495635_0029132 3300046663 Bacteria 3838
85 Ga0495588_0001052 3300046674 Bacteria 11984
86 Ga0495657_0003849 3300046675 Bacteria 12103
87 Ga0495657_0144057 3300046675 Bacteria 1483
88 Ga0495623_0068095 3300046679 Bacteria 2221
89 Ga0495646_0005073 3300046680 Bacteria 8299
90 Ga0495613_0004216 3300046689 Bacteria 10766
91 Ga0495613_0014800 3300046689 Bacteria 5789
92 Ga0495613_0074651 3300046689 Bacteria 2469
93 Ga0495589_0003791 3300046794 Bacteria 8133
94 Ga0495589_0008907 3300046794 Bacteria 5222
95 Ga0495589_0044145 3300046794 Bacteria 2217
96 Ga0495600_0000124 3300046809 Bacteria 43037
97 Ga0495604_0000635 3300047317 Bacteria 30134
98 Ga0495604_0021140 3300047317 Bacteria 5193
99 Ga0495636_0031491 3300047318 Bacteria 2174
100 Ga0495676_0002926 3300047321 Bacteria 15426
101 Ga0495676_0003257 3300047321 Bacteria 14666
102 Ga0495676_0005841 3300047321 Bacteria 11298
103 Ga0495676_0045658 3300047321 Bacteria 3563
104 Ga0495680_0014744 3300047322 Bacteria 6756
105 Ga0495683_0103937 3300047323 Bacteria 1363
106 Ga0495687_006233 3300047443 Bacteria 7359
107 Ga0495687_053388 3300047443 Bacteria 1702
108 Ga0495677_0040776 3300047445 Bacteria 1698
109 Ga0495685_011077 3300047447 Bacteria 3035
110 Ga0495685_011663 3300047447 Bacteria 2970
111 Ga0495685_015382 3300047447 Bacteria 2608
112 Ga0495685_039006 3300047447 Bacteria 1626
113 Ga0495681_0002430 3300047470 Bacteria 13307
114 Ga0495686_0139631 3300047472 Bacteria 1430
115 Ga0495593_0031543 3300047673 Bacteria 2894
116 Ga0495614_0001443 3300048089 Bacteria 10271
117 Ga0495614_0002481 3300048089 Bacteria 8208
118 Ga0495614_0008499 3300048089 Bacteria 4564
119 Ga0495626_0013447 3300048091 Bacteria 4253
120 Ga0501033_0002616 3300049570 Bacteria 15157
121 Ga0501034_0016910 3300049571 Bacteria 7477
122 Ga0501034_0087590 3300049571 Bacteria 3113
123 Ga0501034_0257749 3300049571 Bacteria 1687
124 Ga0501036_0014317 3300049572 Bacteria 6602
125 Ga0501037_0013960 3300049573 Bacteria 5919
126 Ga0501037_0044281 3300049573 Bacteria 3268
127 Ga0501038_0022169 3300049574 Bacteria 5691
128 Ga0501043_0006672 3300049579 Bacteria 9233
129 Ga0501046_0039624 3300049580 Bacteria 3771
130 Ga0501047_0013536 3300049581 Bacteria 7736
131 Ga0501047_0081405 3300049581 Bacteria 3112
132 Ga0501035_0009651 3300049822 Bacteria 8978
133 Ga0501035_0082771 3300049822 Bacteria 2832
134 Ga0501035_0104014 3300049822 Bacteria 2490
135 Ga0501044_0085940 3300049823 Bacteria 3178
136 Ga0501044_0262389 3300049823 Bacteria 1665
137 nmdc:mga03n38_2615_c1 3300050490 Bacteria 5612
138 nmdc:mga06z11_2103_c1 3300050494 Bacteria 7556
139 Ga0500644_0004472 3300053088 Bacteria 3500
140 Ga0500640_018999 3300053095 Bacteria 2939
141 Ga0500573_0057700 3300053140 Bacteria 2227
142 Ga0500600_0084990 3300053149 Bacteria 1702
143 Ga0466962_0000887 3300061719 Bacteria 13595
144 Ga0466962_0034105 3300061719 Bacteria 2435
145 2501943252 2501939600 Bacteria 6907073
146 2515493683 2515154088 Bacteria 5526283
147 2515720560 2515154129 Bacteria 5584369
148 2515755073 2515154137 Bacteria 5711575
149 2516084127 2515154202 Bacteria 5471270
150 2516087785 2515154203 Bacteria 5458536
151 2547409041 2547132111 Bacteria 8013147
152 2585317343 2582581314 Bacteria 11452267
153 2616693142 2616644814 Bacteria 11555299
154 2616904351 2616644941 Bacteria 8510691
155 2643900912 2643221578 Bacteria 9213798
156 2643946841 2643221587 Bacteria 7586415
157 2644263515 2643221647 Bacteria 10741251
158 2644407058 2643221673 Bacteria 9196637
159 2644435022 2643221677 Bacteria 7584031
160 2644442171 2643221678 Bacteria 9540101
161 2644631756 2643221714 Bacteria 9015452
162 2784586425 2784132148 Bacteria 8627943
163 2785346199 2784746763 Bacteria 9783172
164 2785366751 2784746768 Bacteria 10036182
165 2786667809 2786546132 Bacteria 10419719
166 2808847245 2808606359 Bacteria 9866990
167 2808918055 2808606375 Bacteria 9466072
168 2809229927 2808606448 Bacteria 8656184
169 2811842963 2808606982 Bacteria 7791042
170 2812483341 2811994917 Bacteria 7761064
171 2855671466 2855670206 Bacteria 7120389
172 2855680632 2855676851 Bacteria 7063653
173 2856860650 2856858025 Bacteria 7255264
174 2857292162 2857288857 Bacteria 7189066
175 2858854555 2858848962 Bacteria 6963058
176 2858873858 2858868258 Bacteria 7683772
177 2858883681 2858882152 Bacteria 7230291
178 2858890478 2858888857 Bacteria 7060307
179 2858901108 2858895516 Bacteria 7378898
180 2858903391 2858902515 Bacteria 7086037
181 2862180704 2862178590 Bacteria 8583590
182 2862290054 2862281513 Bacteria 9621493
183 2862292959 2862290372 Bacteria 7471434
184 2862384051 2862382967 Bacteria 10317375
185 2862511124 2862507626 Bacteria 9425308
186 2862574993 2862574272 Bacteria 10567477
187 2863407519 2863404153 Bacteria 9672205
188 2867304084 2867302475 Bacteria 7087181
189 2867313080 2867312974 Bacteria 7058875
190 2867325104 2867319477 Bacteria 7069771
191 2867431746 2867428634 Bacteria 9590268
192 2869049137 2869048445 Bacteria 6875584
193 2869062594 2869061728 Bacteria 7112407
194 2869070396 2869068681 Bacteria 7205615
195 2873158094 2873151551 Bacteria 8625867
196 2875398371 2875391855 Bacteria 7600475
197 2877683792 2877676314 Bacteria 9512378
198 2902585602 2902582711 Bacteria 6187705
199 2912726528 2912723979 Bacteria 8557534
200 2912764778 2912757875 Bacteria 7940295
201 2918508505 2918501144 Bacteria 8668083
202 2919469905 2919468124 Bacteria 9133025
203 2929220848 2929219909 Bacteria 6984360
204 2935391304 2935390628 Bacteria 7043367
205 2946045821 2946045630 Bacteria 8527308
206 2946073566 2946072368 Bacteria 8999607
207 2954008606 2954002825 Bacteria 9173742
208 2954673949 2954673503 Bacteria 9685905
209 2954690042 2954682443 Bacteria 9862841
210 2954699841 2954691527 Bacteria 10720516
211 2954702357 2954701450 Bacteria 10834262
212 2954718727 2954711539 Bacteria 10867210
213 2954728698 2954721474 Bacteria 10456478
214 2954733112 2954731030 Bacteria 10243860
215 2954747596 2954740390 Bacteria 10229294
216 2954751993 2954749733 Bacteria 10366972
217 2954766712 2954759201 Bacteria 9358192
218 2996227062 2996221748 Bacteria 6799777
219 3006398345 3006393351 Bacteria 6615579
220 3006429141 3006425503 Bacteria 6491253
221 3006492934 3006486233 Bacteria 8157040
222 3006497050 3006493962 Bacteria 8825450
223 649811385 649633069 Bacteria 6962533
224 8003856804 8003856774 Bacteria 7675274
225 8008560857 8008558824 Bacteria 10610750
226 8008581088 8008574985 Bacteria 7815457
227 8023626008 8023623736 Bacteria 8593882
228 8025538389 8025530807 Bacteria 8495698
229 8048407385 8048406513 Bacteria 8936924
230 8056832645 8056829672 Bacteria 9045328
231 Ga0495665_0038479
232 Ga0068853_100117705
233 Ga0081455_10194671
234 Ga0075363_100015393
235 Ga0105245_10019477
236 Ga0105248_10273763
237 Ga0105238_10188871
238 Ga0182008_10003575
239 Ga0182007_10003274
240 Ga0183367_1003
241 Ga0207711_10157346
242 Ga0207639_10028728
243 Ga0307517_10001103
244 Ga0307515_10002955
245 Ga0307515_10201766
246 Ga0307511_10000334
247 Ga0307511_10100825
248 Ga0307512_10001670
249 Ga0307512_10063563
250 Ga0307513_10001865
251 Ga0307509_10024865
252 Ga0307509_10030629
253 Ga0307508_10010556
254 Ga0307508_10071453
255 Ga0307514_10014049
256 Ga0307516_10002861
257 Ga0307518_10020369
258 Ga0307510_10015027
259 Ga0307510_10116832
260 Ga0307510_10154477
261 Ga0395898_0008398
262 Ga0395898_0037296
263 Ga0395898_0065955
264 Ga0451841_1317346
265 Ga0451853_0585705
266 Ga0439448_0015327
267 Ga0439457_000418
268 Ga0450894_000062
269 Ga0450898_001044
270 Ga0450903_000015
271 Ga0439458_0000287
272 Ga0466972_0010837
273 Ga0466972_0028995
274 Ga0466965_0004393
275 Ga0466961_0004290
276 Ga0466963_0000082
277 Ga0466964_0000995
278 Ga0466957_0001802
279 Ga0466960_0016403
280 Ga0466967_0000758
281 Ga0466967_0115465
282 Ga0495617_014306
283 Ga0495603_0000412
284 Ga0495603_0000853
285 Ga0495603_0004797
286 Ga0495629_0000886
287 Ga0495629_0004730
288 Ga0495629_0018334
289 Ga0495629_0044139
290 Ga0495638_0025187
291 Ga0495651_0051270
292 Ga0495582_0016720
293 Ga0495664_0005382
294 Ga0495585_0026432
295 Ga0495594_0001881
296 Ga0495583_0011636
297 Ga0495583_0044609
298 Ga0495606_0012472
299 Ga0495618_0106970
300 Ga0495620_0002993
301 Ga0495628_0044087
302 Ga0495630_0180160
303 Ga0495631_0001286
304 Ga0495643_0006360
305 Ga0495652_0022281
306 Ga0495640_0035107
307 Ga0495622_0009251
308 Ga0495622_0060736
309 Ga0495634_0039756
310 Ga0495611_0049395
311 Ga0495625_0009696
312 Ga0495625_0048612
313 Ga0495635_0017976
314 Ga0495635_0029132
315 Ga0495588_0001052
316 Ga0495657_0003849
317 Ga0495657_0144057
318 Ga0495623_0068095
319 Ga0495646_0005073
320 Ga0495613_0004216
321 Ga0495613_0014800
322 Ga0495613_0074651
323 Ga0495589_0003791
324 Ga0495589_0008907
325 Ga0495589_0044145
326 Ga0495600_0000124
327 Ga0495604_0000635
328 Ga0495604_0021140
329 Ga0495636_0031491
330 Ga0495676_0002926
331 Ga0495676_0003257
332 Ga0495676_0005841
333 Ga0495676_0045658
334 Ga0495680_0014744
335 Ga0495683_0103937
336 Ga0495687_006233
337 Ga0495687_053388
338 Ga0495677_0040776
339 Ga0495685_011077
340 Ga0495685_011663
341 Ga0495685_015382
342 Ga0495685_039006
343 Ga0495681_0002430
344 Ga0495686_0139631
345 Ga0495593_0031543
346 Ga0495614_0001443
347 Ga0495614_0002481
348 Ga0495614_0008499
349 Ga0495626_0013447
350 Ga0501033_0002616
351 Ga0501034_0016910
352 Ga0501034_0087590
353 Ga0501034_0257749
354 Ga0501036_0014317
355 Ga0501037_0013960
356 Ga0501037_0044281
357 Ga0501038_0022169
358 Ga0501043_0006672
359 Ga0501046_0039624
360 Ga0501047_0013536
361 Ga0501047_0081405
362 Ga0501035_0009651
363 Ga0501035_0082771
364 Ga0501035_0104014
365 Ga0501044_0085940
366 Ga0501044_0262389
367 nmdc:mga03n38_2615_c1
368 nmdc:mga06z11_2103_c1
369 Ga0500644_0004472
370 Ga0500640_018999
371 Ga0500573_0057700
372 Ga0500600_0084990
373 Ga0466962_0000887
374 Ga0466962_0034105
375 2501943252
376 2515493683
377 2515720560
378 2515755073
379 2516084127
380 2516087785
381 2547409041
382 2585317343
383 2616693142
384 2616904351
385 2643900912
386 2643946841
387 2644263515
388 2644407058
389 2644435022
390 2644442171
391 2644631756
392 2784586425
393 2785346199
394 2785366751
395 2786667809
396 2808847245
397 2808918055
398 2809229927
399 2811842963
400 2812483341
401 2855671466
402 2855680632
403 2856860650
404 2857292162
405 2858854555
406 2858873858
407 2858883681
408 2858890478
409 2858901108
410 2858903391
411 2862180704
412 2862290054
413 2862292959
414 2862384051
415 2862511124
416 2862574993
417 2863407519
418 2867304084
419 2867313080
420 2867325104
421 2867431746
422 2869049137
423 2869062594
424 2869070396
425 2873158094
426 2875398371
427 2877683792
428 2902585602
429 2912726528
430 2912764778
431 2918508505
432 2919469905
433 2929220848
434 2935391304
435 2946045821
436 2946073566
437 2954008606
438 2954673949
439 2954690042
440 2954699841
441 2954702357
442 2954718727
443 2954728698
444 2954733112
445 2954747596
446 2954751993
447 2954766712
448 2996227062
449 3006398345
450 3006429141
451 3006492934
452 3006497050
453 649811385
454 8003856804
455 8008560857
456 8008581088
457 8023626008
458 8025538389
459 8048407385
460 8056832645

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01590

GAF

GAF domain

105

237

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4lrz-assembly1.cif.gz_H crystal structure of the e.coli dhar(n)-dhal complex 0.8665 39 215
4lry-assembly1.cif.gz_C crystal structure of the e.coli dhar(n)-dhak(t79l) complex 0.8523 39 215
5ju7-assembly1.cif.gz_A dna binding domain of e.coli cadc 0.7874 239 313
5dcm-assembly1.cif.gz_B structure of a lantibiotic response regulator: c-terminal domain of the nisin resistance regulator nsrr 0.7828 233 310
5vfa-assembly1.cif.gz_A ritr mutant - c128d 0.7803 239 310
ID Description Score Start End Superfamily
4lrzH01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.8665 39 215 3.30.450.40
4lrzH01 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.8577 39 215 3.30.450.40
2gwrA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8315 239 313 1.10.10.10
5vfaA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7803 239 310 1.10.10.10
af_P23890_1_102_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7775 233 310 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6F7WGC2-F1-model_v4 GAF domain-containing protein 0.9447 1 215
AF-A0A0K2R6I4-F1-model_v4 deleted 0.9397 83 198
AF-A0A6F7WGC2-F1-model_v4 GAF domain-containing protein 0.9363 1 215
AF-A0A6B2XRN2-F1-model_v4 Transcriptional regulator 0.9357 38 163
AF-A0A5S4FTU8-F1-model_v4 GAF domain-containing protein 0.9348 15 217

Map