F342339

General Info

Members Datasets Scaffolds Average Seq Length
229 179 165 302

Family's Representative Sequence

Representative Sequence 3300046616|Ga0495668_0000049|Ga0495668_0000049_68195_69190
Length 331
Sequence MALTAVVGNRYNLFQAILEAVAMETLSNLESFVRSAESSSFSAAARLLALTPAAVSRNVAHLERNLGIRLFQRTTRGLKLTEEGERFLMAVSGGLDSIQGAIAEATANKGEPAGVLTISVPPRFGRLHILPLLQPYASRYPAVTLDCGFENRQADLIADRIDVAIGGGFELTPGVVARELARAHVIAVASPEYVKKIGASLPRTPADLAGLDGILMRSPQTRRVRTWSMRNRRGAEMVADLKPAMLVNDPDALCAAALMGMGVALLAMADVVEHLERGELVRLLPDWYVDAGPISLYFASQKLLPAKTRTFVDFVTESFRSAKLAQRFSAL

Samples

Sample ID Description Type Environment
1 2510461076 Rhizobium leguminosarum bv. trifolii TA1 Isolate Nodule
2 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
3 2513237085 Rhizobium leguminosarum bv. viciae UPM1137 Isolate Nodule
4 2513237093 Rhizobium leguminosarum bv. phaseoli FA23 Isolate Nodule
5 2513237103 Rhizobium leguminosarum bv. viciae VF39 Isolate Nodule
6 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
7 2515154113 Rhizobium ruizarguesonis Vc2 Isolate Nodule
8 2515154114 Rhizobium ruizarguesonis Vh3 Isolate Nodule
9 2515154116 Rhizobium ruizarguesonis Ps8 Isolate Nodule
10 2515154134 Rhizobium gallicum bv. gallicum R602sp Isolate Nodule
11 2516653077 Rhizobium acaciae WSM1481 Isolate Nodule
12 2516653085 Rhizobium leguminosarum bv. phaseoli 4292 Isolate Nodule
13 2517093000 Rhizobium leguminosarum bv. trifolii SRDI943 Isolate Nodule
14 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
15 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
16 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
17 2585427526 Rhizobium leguminosarum OV152 Isolate Rhizosphere
18 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
19 2599185210 Rhizobium sp. NFACC06-2 Isolate Rhizoplane
20 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
21 2643221645 Massilia sp. Root351 Isolate Unclassified
22 2643221650 Pseudomonas sp. Root401 Isolate Unclassified
23 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
24 2724679232 Rhizobium leguminosarum Vaf12 Isolate Unclassified
25 2765235942 Rhizobium sp. WYCCWR10014 Isolate Nodule
26 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
27 2838686498 Rhizobium leguminosarum SEMIA 416 Isolate Nodule
28 2838729681 Rhizobium leguminosarum SEMIA 445 Isolate Nodule
29 2838742623 Rhizobium leguminosarum SEMIA 449 Isolate Nodule
30 2842110456 Rhizobium esperanzae SEMIA 414 Isolate Nodule
31 2842156927 Rhizobium leguminosarum SEMIA 459 Isolate Nodule
32 2842163707 Rhizobium leguminosarum SEMIA 460 Isolate Nodule
33 2842180545 Rhizobium leguminosarum SEMIA 463 Isolate Nodule
34 2842217011 Rhizobium leguminosarum SEMIA 475 Isolate Nodule
35 2842229732 Rhizobium leguminosarum SEMIA 481 Isolate Nodule
36 2842243621 Rhizobium leguminosarum SEMIA 483 Isolate Nodule
37 2842257432 Rhizobium leguminosarum SEMIA 485 Isolate Nodule
38 2842271015 Rhizobium leguminosarum SEMIA 488 Isolate Nodule
39 2842304105 Rhizobium leguminosarum SEMIA 499 Isolate Nodule
40 2844454524 Rhizobium leguminosarum bv. viciae BIHB 1217 Isolate Nodule
41 2857516855 Rhizobium sp. R-72456 Isolate Unclassified
42 2857558681 Duganella sp. R-74565 Isolate Unclassified
43 2884411467 Dyella sp. AD56 Isolate Rhizosphere
44 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
45 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
46 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
47 2933570622 Rhizobium leguminosarum SEMIA 409 Isolate Nodule
48 2933586486 Rhizobium leguminosarum SEMIA 4039 Isolate Nodule
49 2935901341 Rhizobium leguminosarum SEMIA 4082 Isolate Nodule
50 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
51 3003930520 Sinorhizobium sp. BG8 Isolate Unclassified
52 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
53 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
54 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
55 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
56 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
57 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
58 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
59 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
60 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
61 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
62 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
63 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
64 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
65 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
66 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
67 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
68 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
69 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
70 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
71 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
72 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
73 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
74 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
75 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
76 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
77 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
78 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
79 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
80 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
81 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
82 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
83 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
84 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
85 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
86 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
87 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
88 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
89 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
90 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
91 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
92 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
93 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
94 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
95 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
96 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
97 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
98 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
99 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
100 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
101 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
102 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
103 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
104 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
105 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
106 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
107 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
108 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
109 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
110 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
111 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
112 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
113 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
114 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
116 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
117 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
118 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
119 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
120 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
121 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
122 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
123 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
124 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
125 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
126 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
127 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
128 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
129 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
130 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
131 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
132 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
133 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
134 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
135 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
136 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
137 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
138 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
139 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
140 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
141 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
142 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
143 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
144 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
145 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
146 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
147 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
148 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
149 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
150 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
151 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
152 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
153 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
154 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
155 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
156 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
157 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
158 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
159 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
160 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
161 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
162 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
163 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
164 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
165 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
166 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
167 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
168 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
169 639633055 Rhizobium leguminosarum bv. viciae 3841 Isolate Unclassified
170 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
171 8005258706 Rhizobium sp. R693 Isolate Nodule
172 8005307578 Rhizobium leguminosarum bv. phaseoli LCS0306 Isolate Unclassified
173 8005376324 Rhizobium changzhiense WYCCWR 11279 Isolate Nodule
174 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
175 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
176 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified
177 8006994254 Bradyrhizobium sp. sGM-13 Isolate Nodule
178 8023680758 Rhizobium leguminosarum SARCC-132 Isolate Nodule
179 8057874678 Rhizobium acaciae 1AS12 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 72.05
Metatranscriptomes 0
Isolates 27.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 36.24
Nodule 17.03
Rhizoplane 5.24
Rhizosphere 25.33
Stem 0
Stem Tuber 0
Unclassified 16.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000002 3300002704 Bacteria 292156
2 JGI25156J39149_1000003 3300002705 Bacteria 305434
3 JGI25154J39366_1000009 3300002738 Bacteria 305408
4 JGI25158J39367_1000346 3300002739 Bacteria 10182
5 JGI25157J39369_1000002 3300002741 Bacteria 305434
6 JGI25152J39213_1000154 3300002773 Bacteria 46867
7 JGI25150J39212_1003177 3300002774 Bacteria 3900
8 JGI25159J45721_1000148 3300002987 Bacteria 32592
9 JGI25159J45721_1000298 3300002987 Bacteria 23244
10 JGI25159J45721_1008655 3300002987 Bacteria 2772
11 JGI25151J46595_10002485 3300003187 Bacteria 11035
12 JGI25151J46595_10010661 3300003187 Bacteria 4255
13 JGI25153J46596_10005363 3300003215 Bacteria 6734
14 JGI25153J46596_10005600 3300003215 Bacteria 6563
15 JGI25153J46596_10052332 3300003215 Bacteria 1163
16 rootH1_10057556 3300003316 Bacteria 4197
17 rootL2_10288335 3300003322 Bacteria 2263
18 rootH1_10054326 3300003323 Bacteria 17233
19 rootH1_10093537 3300003323 Bacteria 17827
20 JGI25160J50197_1000123 3300003354 Bacteria 70031
21 JGI25160J50197_1000503 3300003354 Bacteria 23244
22 JGI25160J50197_1013559 3300003354 Bacteria 2772
23 JGI25161J50226_1000032 3300003374 Bacteria 138440
24 JGI25161J50226_1000363 3300003374 Bacteria 23244
25 JGI25161J50226_1004781 3300003374 Bacteria 2772
26 Ga0055526_1005582 3300003771 Bacteria 7175
27 Ga0055526_1010908 3300003771 Bacteria 4165
28 Ga0055537_1004089 3300003773 Bacteria 4272
29 Ga0055524_1003329 3300003775 Bacteria 7840
30 Ga0055524_1035386 3300003775 Bacteria 1362
31 Ga0055528_1013476 3300003790 Bacteria 3093
32 Ga0055530_10007938 3300003791 Unclassified 4348
33 Ga0055540_1011056 3300003792 Bacteria 2947
34 Ga0055531_10010741 3300003794 Unclassified 4511
35 Ga0058692_1019470 3300003856 Bacteria 1445
36 Ga0055543_1000294 3300004625 Bacteria 35881
37 Ga0055543_1000347 3300004625 Bacteria 31511
38 Ga0055543_1006516 3300004625 Bacteria 2810
39 Ga0065165_1003091 3300005262 Bacteria 12401
40 Ga0065165_1004544 3300005262 Bacteria 8481
41 Ga0065165_1016228 3300005262 Bacteria 2798
42 Ga0065714_10087235 3300005288 Bacteria 2057
43 Ga0065707_10084911 3300005295 Bacteria 6641
44 Ga0070698_100418050 3300005471 Bacteria 1275
45 Ga0068863_100101863 3300005841 Bacteria 2730
46 Ga0068862_100040542 3300005844 Bacteria 3958
47 Ga0081455_10066965 3300005937 Bacteria 2995
48 Ga0081538_10021788 3300005981 Bacteria 4664
49 Ga0075364_10103107 3300006051 Bacteria 1900
50 Ga0075362_10043353 3300006177 Bacteria 1992
51 Ga0075369_10067635 3300006186 Bacteria 1569
52 Ga0075369_10091741 3300006186 Bacteria 1356
53 Ga0075430_100051685 3300006846 Bacteria 3463
54 Ga0075431_100191034 3300006847 Bacteria 2098
55 Ga0075434_100069466 3300006871 Bacteria 3512
56 Ga0068865_100120771 3300006881 Bacteria 1948
57 Ga0105251_10025255 3300009011 Bacteria 3041
58 Ga0105251_10085477 3300009011 Bacteria 1454
59 Ga0111539_10000066 3300009094 Bacteria 106021
60 Ga0111539_10270261 3300009094 Bacteria 1979
61 Ga0105249_10220021 3300009553 Bacteria 1868
62 Ga0182008_10004820 3300014497 Bacteria 7801
63 Ga0209435_100001 3300025206 Bacteria 1424171
64 Ga0209436_100143 3300025208 Bacteria 34462
65 Ga0209436_103206 3300025208 Bacteria 4454
66 Ga0207425_1000001 3300025245 Bacteria 2525432
67 Ga0207425_1000953 3300025245 Bacteria 13623
68 Ga0207425_1007238 3300025245 Bacteria 2951
69 Ga0209646_1000001 3300025246 Bacteria 3092932
70 Ga0209026_1000003 3300025250 Bacteria 1060571
71 Ga0209759_1000001 3300025256 Bacteria 2799452
72 Ga0209129_1000003 3300025258 Bacteria 903689
73 Ga0209129_1000149 3300025258 Bacteria 114222
74 Ga0209129_1004477 3300025258 Bacteria 5434
75 Ga0209565_1006594 3300025263 Bacteria 3237
76 Ga0209673_1000898 3300025273 Bacteria 38252
77 Ga0209673_1004327 3300025273 Bacteria 7657
78 Ga0209130_1000050 3300025284 Bacteria 222092
79 Ga0209130_1000266 3300025284 Bacteria 65741
80 Ga0209130_1001834 3300025284 Bacteria 12255
81 Ga0209675_1001490 3300025291 Bacteria 13435
82 Ga0209675_1005118 3300025291 Bacteria 5584
83 Ga0209675_1019816 3300025291 Bacteria 1840
84 Ga0209025_1000253 3300025294 Bacteria 125975
85 Ga0209025_1009382 3300025294 Bacteria 6835
86 Ga0209564_1004790 3300025295 Bacteria 8066
87 Ga0209564_1006550 3300025295 Bacteria 6256
88 Ga0209758_1000020 3300025297 Bacteria 734220
89 Ga0209758_1000296 3300025297 Bacteria 97937
90 Ga0209050_1007545 3300025298 Bacteria 6063
91 Ga0209050_1008136 3300025298 Bacteria 5683
92 Ga0209050_1016635 3300025298 Bacteria 2992
93 Ga0209256_1006587 3300025299 Bacteria 6080
94 Ga0207426_1000071 3300025302 Bacteria 329539
95 Ga0207426_1000491 3300025302 Bacteria 59408
96 Ga0207426_1004234 3300025302 Bacteria 7128
97 Ga0209051_1029503 3300025303 Bacteria 2146
98 Ga0209257_1000003 3300025304 Bacteria 1702593
99 Ga0209257_1000557 3300025304 Bacteria 63889
100 Ga0209257_1014815 3300025304 Bacteria 3309
101 Ga0207639_10505545 3300026041 Bacteria 1105
102 Ga0307517_10005117 3300028786 Bacteria 19935
103 Ga0307515_10218556 3300028794 Bacteria 1730
104 Ga0265327_10000841 3300031251 Bacteria 45822
105 Ga0307513_10066434 3300031456 Bacteria 3789
106 Ga0307406_10012491 3300031901 Bacteria 4841
107 Ga0307412_10047234 3300031911 Bacteria 2826
108 Ga0307412_10060945 3300031911 Bacteria 2534
109 Ga0395905_0068516 3300037471 Bacteria 3323
110 Ga0439453_0000201 3300041408 Bacteria 5773
111 Ga0439465_0008153 3300041413 Bacteria 3307
112 Ga0451798_0171067 3300041458 Bacteria 1174
113 Ga0451833_0169812 3300041491 Bacteria 1510
114 Ga0495590_0017539 3300046457 Bacteria 2575
115 Ga0495605_0018321 3300046474 Bacteria 3755
116 Ga0495605_0104044 3300046474 Bacteria 1302
117 Ga0495584_0043378 3300046491 Bacteria 2270
118 Ga0495585_0028845 3300046492 Bacteria 3162
119 Ga0495610_0000012 3300046512 Bacteria 517442
120 Ga0495632_0028141 3300046519 Bacteria 2936
121 Ga0495637_0023184 3300046520 Bacteria 2824
122 Ga0495643_0106005 3300046522 Bacteria 1435
123 Ga0495654_0026770 3300046530 Bacteria 2961
124 Ga0495609_0007465 3300046538 Bacteria 5456
125 Ga0495597_0005766 3300046542 Bacteria 6502
126 Ga0495597_0027797 3300046542 Bacteria 2591
127 Ga0495668_0000049 3300046616 Bacteria 217657
128 Ga0495671_0020024 3300046692 Bacteria 3530
129 Ga0495649_0030978 3300046694 Bacteria 2951
130 Ga0495636_0001489 3300047318 Bacteria 8875
131 Ga0495687_000716 3300047443 Bacteria 36771
132 Ga0495687_004910 3300047443 Bacteria 8765
133 Ga0495673_0000003 3300047469 Bacteria 1491337
134 Ga0495673_0000359 3300047469 Bacteria 55990
135 Ga0495686_0001846 3300047472 Bacteria 21266
136 Ga0496100_0058713 3300048903 Bacteria 2526
137 Ga0496102_0045880 3300048905 Bacteria 3968
138 Ga0496103_0156768 3300048906 Bacteria 1459
139 Ga0496104_0234451 3300048907 Bacteria 1747
140 Ga0496108_0326099 3300048911 Bacteria 1339
141 Ga0496110_0058563 3300048913 Bacteria 3393
142 Ga0496110_0110279 3300048913 Bacteria 2472
143 Ga0496112_0270885 3300048915 Bacteria 1646
144 Ga0496113_0093494 3300048916 Bacteria 2321
145 Ga0496122_0022748 3300048925 Bacteria 5560
146 Ga0496122_0039268 3300048925 Bacteria 3777
147 Ga0496123_0017547 3300048926 Bacteria 5751
148 Ga0496124_0310847 3300048927 Bacteria 1133
149 Ga0496126_0006842 3300048929 Bacteria 12642
150 Ga0496126_0228738 3300048929 Bacteria 1559
151 nmdc:mga03683_39660_c1 3300050489 Bacteria 1928
152 nmdc:mga0qj67_213125_c1 3300050509 Bacteria 1568
153 nmdc:mga0n895_68374_c1 3300050512 Bacteria 3519
154 Ga0500643_000660 3300053087 Bacteria 23099
155 Ga0500641_0001863 3300053096 Bacteria 7485
156 Ga0500641_0018950 3300053096 Bacteria 2595
157 Ga0500556_0007186 3300053104 Bacteria 3181
158 Ga0500618_000384 3300053125 Bacteria 30501
159 Ga0500628_001106 3300053129 Bacteria 4702
160 Ga0500568_0026752 3300053139 Bacteria 2418
161 Ga0500616_0019758 3300053153 Bacteria 3793
162 Ga0500619_000193 3300053154 Bacteria 14285
163 Ga0500622_0004435 3300053156 Bacteria 8819
164 Ga0500645_000117 3300053730 Bacteria 63086
165 Ga0500645_000716 3300053730 Bacteria 20575

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005937 Ga0081455_10066965 Ga0081455_100669654 254
2 3300005844 Ga0068862_100040542 Ga0068862_1000405424 266
3 3300005981 Ga0081538_10021788 Ga0081538_100217882 266
4 3300006881 Ga0068865_100120771 Ga0068865_1001207712 266
5 3300009094 Ga0111539_10270261 Ga0111539_102702614 266
6 3300009553 Ga0105249_10220021 Ga0105249_102200212 266
7 3300028786 Ga0307517_10005117 Ga0307517_1000511710 266
8 3300031456 Ga0307513_10066434 Ga0307513_100664342 266
9 3300041408 Ga0439453_0000201 Ga0439453_0000201_1629_2444 266
10 3300046519 Ga0495632_0028141 Ga0495632_0028141_470_1285 266
11 3300048903 Ga0496100_0058713 Ga0496100_0058713_203_1168 266
12 3300048905 Ga0496102_0045880 Ga0496102_0045880_2479_3444 266
13 3300048907 Ga0496104_0234451 Ga0496104_0234451_495_1460 266
14 3300048911 Ga0496108_0326099 Ga0496108_0326099_98_1063 266
15 3300048913 Ga0496110_0110279 Ga0496110_0110279_377_1342 266
16 3300048915 Ga0496112_0270885 Ga0496112_0270885_242_1207 266
17 3300048916 Ga0496113_0093494 Ga0496113_0093494_908_1873 266
18 3300048925 Ga0496122_0039268 Ga0496122_0039268_576_1541 266
19 3300048927 Ga0496124_0310847 Ga0496124_0310847_55_1020 266
20 3300053096 Ga0500641_0018950 Ga0500641_0018950_479_1294 266
21 iso_pu_bacteria 2534681796 2535520608 266
22 iso_pu_bacteria 2889033259 2889034801 266
23 iso_pu_bacteria 8006964411 8006972071 266
24 iso_pu_bacteria 8006984368 8006991742 266
25 iso_pu_bacteria 8006994254 8007001608 266
26 3300009011 Ga0105251_10085477 Ga0105251_100854772 267
27 3300048906 Ga0496103_0156768 Ga0496103_0156768_271_1236 267
28 iso_pu_bacteria 2643221643 2644242083 271
29 3300047443 Ga0495687_004910 Ga0495687_004910_7388_8353 275
30 3300006186 Ga0075369_10067635 Ga0075369_100676352 278
31 3300037471 Ga0395905_0068516 Ga0395905_0068516_401_1327 279
32 3300046457 Ga0495590_0017539 Ga0495590_0017539_228_1157 280
33 3300046491 Ga0495584_0043378 Ga0495584_0043378_1148_2077 280
34 3300046520 Ga0495637_0023184 Ga0495637_0023184_487_1416 280
35 3300046542 Ga0495597_0027797 Ga0495597_0027797_1426_2355 280
36 3300005288 Ga0065714_10087235 Ga0065714_100872352 283
37 3300046530 Ga0495654_0026770 Ga0495654_0026770_608_1537 283
38 3300046694 Ga0495649_0030978 Ga0495649_0030978_529_1458 283
39 3300006186 Ga0075369_10091741 Ga0075369_100917412 287
40 3300053129 Ga0500628_001106 Ga0500628_001106_307_1236 287
41 iso_pu_bacteria 639633055 639647130 288
42 3300002987 JGI25159J45721_1000148 JGI25159J45721_10001489 289
43 3300003187 JGI25151J46595_10002485 JGI25151J46595_1000248515 289
44 3300003187 JGI25151J46595_10010661 JGI25151J46595_100106612 289
45 3300003215 JGI25153J46596_10005600 JGI25153J46596_100056009 289
46 3300003354 JGI25160J50197_1000123 JGI25160J50197_100012360 289
47 3300003374 JGI25161J50226_1000032 JGI25161J50226_100003215 289
48 3300004625 Ga0055543_1000294 Ga0055543_10002949 289
49 3300025258 Ga0209129_1000149 Ga0209129_100014929 289
50 3300025284 Ga0209130_1000050 Ga0209130_1000050195 289
51 3300025294 Ga0209025_1000253 Ga0209025_10002531 289
52 3300025294 Ga0209025_1009382 Ga0209025_10093825 289
53 3300025295 Ga0209564_1004790 Ga0209564_10047903 289
54 3300025297 Ga0209758_1000296 Ga0209758_10002961 289
55 3300025298 Ga0209050_1007545 Ga0209050_10075452 289
56 3300025298 Ga0209050_1016635 Ga0209050_10166352 289
57 3300025302 Ga0207426_1000071 Ga0207426_100007161 289
58 3300025304 Ga0209257_1014815 Ga0209257_10148154 289
59 3300026041 Ga0207639_10505545 Ga0207639_105055451 289
60 3300047472 Ga0495686_0001846 Ga0495686_0001846_2852_3775 289
61 3300009011 Ga0105251_10025255 Ga0105251_100252553 290
62 3300031251 Ga0265327_10000841 Ga0265327_1000084122 291
63 3300046474 Ga0495605_0104044 Ga0495605_0104044_292_1191 292
64 3300048913 Ga0496110_0058563 Ga0496110_0058563_1637_2566 294
65 iso_pu_bacteria 2643221645 2644255065 296
66 iso_pu_bacteria 2643221654 2644305586 296
67 iso_pu_bacteria 2857558681 2857564144 296
68 3300025291 Ga0209675_1019816 Ga0209675_10198162 297
69 iso_pu_bacteria 2510461076 2510898296 298
70 iso_pu_bacteria 2511231002 2511246204 298
71 iso_pu_bacteria 2513237085 2513580532 298
72 iso_pu_bacteria 2513237093 2513634601 298
73 iso_pu_bacteria 2513237103 2513709535 298
74 iso_pu_bacteria 2513237138 2513869786 298
75 iso_pu_bacteria 2515154113 2515638553 298
76 iso_pu_bacteria 2515154114 2515646757 298
77 iso_pu_bacteria 2515154116 2515661006 298
78 iso_pu_bacteria 2515154134 2515743118 298
79 iso_pu_bacteria 2516653077 2517039609 298
80 iso_pu_bacteria 2516653085 2517075120 298
81 iso_pu_bacteria 2517093000 2517093731 298
82 iso_pu_bacteria 2582581294 2585202171 298
83 iso_pu_bacteria 2582581294 2585205502 298
84 iso_pu_bacteria 2582581867 2585402825 298
85 iso_pu_bacteria 2585427526 2585525306 298
86 iso_pu_bacteria 2585427590 2585823513 298
87 iso_pu_bacteria 2599185210 2599606017 298
88 iso_pu_bacteria 2599185210 2599606356 298
89 iso_pu_bacteria 2643221650 2644280740 298
90 iso_pu_bacteria 2724679232 2725949198 298
91 iso_pu_bacteria 2765235942 2766062604 298
92 iso_pu_bacteria 2838661181 2838668522 298
93 iso_pu_bacteria 2838686498 2838688964 298
94 iso_pu_bacteria 2838729681 2838731259 298
95 iso_pu_bacteria 2838742623 2838743847 298
96 iso_pu_bacteria 2842110456 2842117112 298
97 iso_pu_bacteria 2842156927 2842159699 298
98 iso_pu_bacteria 2842163707 2842169416 298
99 iso_pu_bacteria 2842180545 2842183685 298
100 iso_pu_bacteria 2842217011 2842220901 298
101 iso_pu_bacteria 2842229732 2842233835 298
102 iso_pu_bacteria 2842243621 2842245311 298
103 iso_pu_bacteria 2842257432 2842260039 298
104 iso_pu_bacteria 2842271015 2842274878 298
105 iso_pu_bacteria 2842304105 2842307124 298
106 iso_pu_bacteria 2844454524 2844455489 298
107 iso_pu_bacteria 2857516855 2857523271 298
108 iso_pu_bacteria 2884411467 2884411935 298
109 iso_pu_bacteria 2920760137 2920761541 298
110 iso_pu_bacteria 2920822456 2920825193 298
111 iso_pu_bacteria 2933570622 2933572763 298
112 iso_pu_bacteria 2933586486 2933593369 298
113 iso_pu_bacteria 2935901341 2935906630 298
114 iso_pu_bacteria 2989771324 2989771357 298
115 iso_pu_bacteria 3003930520 3003932930 298
116 iso_pu_bacteria 643692032 643826434 298
117 iso_pu_bacteria 8005258706 8005259512 298
118 iso_pu_bacteria 8005307578 8005310862 298
119 iso_pu_bacteria 8005376324 8005376971 298
120 iso_pu_bacteria 8005542996 8005545692 298
121 iso_pu_bacteria 8023680758 8023687342 298
122 iso_pu_bacteria 8057874678 8057881650 298
123 3300046512 Ga0495610_0000012 Ga0495610_0000012_435615_436535 299
124 3300047469 Ga0495673_0000003 Ga0495673_0000003_599868_600863 299
125 3300048925 Ga0496122_0022748 Ga0496122_0022748_520_1482 299
126 3300048926 Ga0496123_0017547 Ga0496123_0017547_1982_2944 299
127 3300048929 Ga0496126_0006842 Ga0496126_0006842_11166_12086 299
128 3300002739 JGI25158J39367_1000346 JGI25158J39367_10003465 300
129 3300002773 JGI25152J39213_1000154 JGI25152J39213_100015433 300
130 3300002774 JGI25150J39212_1003177 JGI25150J39212_10031772 300
131 3300002987 JGI25159J45721_1000298 JGI25159J45721_100029821 300
132 3300002987 JGI25159J45721_1008655 JGI25159J45721_10086551 300
133 3300003215 JGI25153J46596_10005363 JGI25153J46596_1000536310 300
134 3300003354 JGI25160J50197_1000503 JGI25160J50197_10005039 300
135 3300003354 JGI25160J50197_1013559 JGI25160J50197_10135591 300
136 3300003374 JGI25161J50226_1000363 JGI25161J50226_10003639 300
137 3300003374 JGI25161J50226_1004781 JGI25161J50226_10047811 300
138 3300003771 Ga0055526_1005582 Ga0055526_10055824 300
139 3300003773 Ga0055537_1004089 Ga0055537_10040893 300
140 3300003775 Ga0055524_1003329 Ga0055524_10033297 300
141 3300003790 Ga0055528_1013476 Ga0055528_10134763 300
142 3300003791 Ga0055530_10007938 Ga0055530_100079381 300
143 3300003794 Ga0055531_10010741 Ga0055531_100107411 300
144 3300004625 Ga0055543_1000347 Ga0055543_100034733 300
145 3300004625 Ga0055543_1006516 Ga0055543_10065164 300
146 3300005262 Ga0065165_1003091 Ga0065165_10030919 300
147 3300005262 Ga0065165_1004544 Ga0065165_10045448 300
148 3300005262 Ga0065165_1016228 Ga0065165_10162281 300
149 3300005295 Ga0065707_10084911 Ga0065707_100849115 300
150 3300025208 Ga0209436_100143 Ga0209436_10014333 300
151 3300025208 Ga0209436_103206 Ga0209436_1032065 300
152 3300025245 Ga0207425_1000001 Ga0207425_1000001730 300
153 3300025245 Ga0207425_1000953 Ga0207425_100095312 300
154 3300025258 Ga0209129_1000003 Ga0209129_1000003730 300
155 3300025263 Ga0209565_1006594 Ga0209565_10065943 300
156 3300025273 Ga0209673_1000898 Ga0209673_10008985 300
157 3300025273 Ga0209673_1004327 Ga0209673_10043275 300
158 3300025284 Ga0209130_1000266 Ga0209130_100026611 300
159 3300025284 Ga0209130_1001834 Ga0209130_10018347 300
160 3300025291 Ga0209675_1001490 Ga0209675_100149011 300
161 3300025291 Ga0209675_1005118 Ga0209675_10051184 300
162 3300025295 Ga0209564_1006550 Ga0209564_10065505 300
163 3300025297 Ga0209758_1000020 Ga0209758_1000020546 300
164 3300025298 Ga0209050_1008136 Ga0209050_10081368 300
165 3300025299 Ga0209256_1006587 Ga0209256_10065875 300
166 3300025302 Ga0207426_1000491 Ga0207426_10004917 300
167 3300025302 Ga0207426_1004234 Ga0207426_10042345 300
168 3300025303 Ga0209051_1029503 Ga0209051_10295032 300
169 3300025304 Ga0209257_1000003 Ga0209257_1000003383 300
170 3300025304 Ga0209257_1000557 Ga0209257_10005579 300
171 3300028794 Ga0307515_10218556 Ga0307515_102185562 300
172 3300046522 Ga0495643_0106005 Ga0495643_0106005_296_1219 300
173 3300046542 Ga0495597_0005766 Ga0495597_0005766_3359_4282 300
174 3300046616 Ga0495668_0000049 Ga0495668_0000049_68195_69190 300
175 3300046692 Ga0495671_0020024 Ga0495671_0020024_2083_3030 300
176 3300047443 Ga0495687_000716 Ga0495687_000716_33404_34327 300
177 3300047469 Ga0495673_0000359 Ga0495673_0000359_34959_35888 300
178 3300053139 Ga0500568_0026752 Ga0500568_0026752_849_1772 300
179 3300053154 Ga0500619_000193 Ga0500619_000193_1760_2683 300
180 3300053125 Ga0500618_000384 Ga0500618_000384_20644_21576 301
181 3300002704 JGI25155J39150_1000002 JGI25155J39150_1000002115 302
182 3300002705 JGI25156J39149_1000003 JGI25156J39149_1000003191 302
183 3300002738 JGI25154J39366_1000009 JGI25154J39366_1000009115 302
184 3300002741 JGI25157J39369_1000002 JGI25157J39369_1000002115 302
185 3300003215 JGI25153J46596_10052332 JGI25153J46596_100523321 302
186 3300003316 rootH1_10057556 rootH1_100575562 302
187 3300003322 rootL2_10288335 rootL2_102883352 302
188 3300003323 rootH1_10054326 rootH1_100543262 302
189 3300003323 rootH1_10093537 rootH1_1009353720 302
190 3300003771 Ga0055526_1010908 Ga0055526_10109084 302
191 3300003775 Ga0055524_1035386 Ga0055524_10353861 302
192 3300003792 Ga0055540_1011056 Ga0055540_10110562 302
193 3300003856 Ga0058692_1019470 Ga0058692_10194701 302
194 3300005471 Ga0070698_100418050 Ga0070698_1004180502 302
195 3300005841 Ga0068863_100101863 Ga0068863_1001018632 302
196 3300006051 Ga0075364_10103107 Ga0075364_101031072 302
197 3300006177 Ga0075362_10043353 Ga0075362_100433532 302
198 3300006846 Ga0075430_100051685 Ga0075430_1000516854 302
199 3300006847 Ga0075431_100191034 Ga0075431_1001910342 302
200 3300006871 Ga0075434_100069466 Ga0075434_1000694662 302
201 3300009094 Ga0111539_10000066 Ga0111539_100000666 302
202 3300014497 Ga0182008_10004820 Ga0182008_100048204 302
203 3300025206 Ga0209435_100001 Ga0209435_100001602 302
204 3300025245 Ga0207425_1007238 Ga0207425_10072382 302
205 3300025246 Ga0209646_1000001 Ga0209646_1000001971 302
206 3300025250 Ga0209026_1000003 Ga0209026_1000003602 302
207 3300025256 Ga0209759_1000001 Ga0209759_1000001602 302
208 3300025258 Ga0209129_1004477 Ga0209129_10044775 302
209 3300031901 Ga0307406_10012491 Ga0307406_100124912 302
210 3300031911 Ga0307412_10047234 Ga0307412_100472344 302
211 3300031911 Ga0307412_10060945 Ga0307412_100609453 302
212 3300041413 Ga0439465_0008153 Ga0439465_0008153_1976_2905 302
213 3300041458 Ga0451798_0171067 Ga0451798_0171067_150_1079 302
214 3300041491 Ga0451833_0169812 Ga0451833_0169812_512_1441 302
215 3300046474 Ga0495605_0018321 Ga0495605_0018321_2045_2974 302
216 3300046492 Ga0495585_0028845 Ga0495585_0028845_2223_3152 302
217 3300046538 Ga0495609_0007465 Ga0495609_0007465_2760_3695 302
218 3300047318 Ga0495636_0001489 Ga0495636_0001489_4415_5356 302
219 3300048929 Ga0496126_0228738 Ga0496126_0228738_470_1399 302
220 3300050489 nmdc:mga03683_39660_c1 nmdc:mga03683_39660_c1_161_1090 302
221 3300050509 nmdc:mga0qj67_213125_c1 nmdc:mga0qj67_213125_c1_49_978 302
222 3300050512 nmdc:mga0n895_68374_c1 nmdc:mga0n895_68374_c1_2360_3289 302
223 3300053087 Ga0500643_000660 Ga0500643_000660_9919_10848 302
224 3300053096 Ga0500641_0001863 Ga0500641_0001863_1656_2585 302
225 3300053104 Ga0500556_0007186 Ga0500556_0007186_277_1206 302
226 3300053153 Ga0500616_0019758 Ga0500616_0019758_1908_2837 302
227 3300053156 Ga0500622_0004435 Ga0500622_0004435_1287_2216 302
228 3300053730 Ga0500645_000117 Ga0500645_000117_13542_14471 302
229 3300053730 Ga0500645_000716 Ga0500645_000716_11093_12022 302

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

26

85

0.97

PF03466

LysR_substrate

LysR substrate binding domain

109

320

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
5x0n-assembly2.cif.gz_B regulatory domain of variant c227s aphb from vibrio vulnificus 0.848 85 286
3hhf-assembly1.cif.gz_B structure of crga regulatory domain, a lysr-type transcriptional regulator from neisseria meningitidis. 0.8431 83 286
5x0n-assembly2.cif.gz_B regulatory domain of variant c227s aphb from vibrio vulnificus 0.8406 85 286
3mz1-assembly2.cif.gz_C the crystal structure of a possible transcription regulator protein from sinorhizobium meliloti 1021 0.8397 83 297
3mz1-assembly1.cif.gz_A the crystal structure of a possible transcription regulator protein from sinorhizobium meliloti 1021 0.8386 83 298
ID Description Score Start End Superfamily
af_P39376_183_267_3.40.190.10 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8824 208 253 3.40.190.10
af_P67662_87_293_3.40.190.290 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2; 0.8781 82 288 3.40.190.290
3hhfB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.875 83 151 3.40.190.10
3mz1C01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8719 83 152 3.40.190.10
af_P67662_87_293_3.40.190.290 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2; 0.8628 82 288 3.40.190.290
ID Description Score Start End GO Terms
AF-A0A127QJ48-F1-model_v4 LysR substrate binding domain protein 0.9254 115 298 GO:0003700
GO:0006351
GO:0043565
AF-V7DAT4-F1-model_v4 LysR family transcriptional regulator 0.8862 78 287
AF-A0A519Y4A3-F1-model_v4 deleted 0.8847 98 300
AF-A0A240B5D6-F1-model_v4 D-malate degradation protein R 0.8799 92 292 GO:0003700
GO:0006351
GO:0043565
AF-A0A485CE98-F1-model_v4 D-malate degradation protein R 0.8793 78 295 GO:0003700
GO:0006351
GO:0043565

Feature Viewer

pLDDT pTM Quality
86.26 0.81 High
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Predicted Structure (AlphaFold2)

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