F341051

General Info

Members Datasets Scaffolds Average Seq Length
228 133 418 853

Family's Representative Sequence

Representative Sequence 3300025939|Ga0207665_10013483|Ga0207665_100134834
Length 1007
Sequence MDVMDERAPGDAHLAACLASDLDGTFESLVLAHQDRLFTIAHRIGGDRHDAEELVQDTFVRAYRAMAAYPPARVRELRLRGDTIRHGGRMHPPLESLESQVCVIFAKPDSRAMLCRCGSWSASSAEVDSVSKRHRSFLFASLLPAFLVVSAFAVLQAQEGKSTAAKPARWSDPATWPDRQVPRAGDKVTIAAGKDVVLDVSPPALNGLTIDGKLSFANTADLELTTEWVMVHGELEIGTEARPHTRKATITLTDNVKGEDIGVPAATVASERVDRGIMLMGGTLNLHGDRKHTWTKLANTANAGSTSIQVLDASGWRVGDEIVLASTDFDPRQAERRTISAIKGNAITLNAKLDYMHFGKITFDVDERGEVGLLTRNVVLQASADAAEPPFYGGHVMAMGASRMFVEGVEFQRMGQNLTLARYPIHWHLVGDAVGQYIRNASIHDTYNRCVTVHGTNFLRVENNVTYNTVGHCFFLEDGAEHGNQFVHNLAIQIKCHTSKACAPTNLGANGENMGSNPLNRATYRAASMSGKDTLLPSDNTVTAYWITNPDNVFIDNVAAGSDENGFWWSLPEHPQGKFEGTEISKATWPRRTRMAEFRGNVAHSNFDGFMLDRNINLENVFGLAGPSHIAKENPADENSKSVESLLADLTAYKNRNGGVWGRGELHVFRNLKAADNAIGFTNSTGSFGADTFTSLVVDSLFVGETDNIGNPVTPEEKAYGRSLPKRLIPDFPIRAYEYYDYRHDVVNTTFVNFQDNKQRGSGALSWLLYTGAGVTTENTVKSAKYINAKPVYFPKIDSRFDSDNRGGGAYRTAAIHDLDGSTTGIPDSYVLIHDGENDSVATDDTCEIHPTWNASVCAGDIGRIQFSIRRPGPTRGAGLALKDVAVRSAAPITLSRNGKDFKITANQSTVRAGTEIRVKTERPEVAISLSEMAKDSWVVFELPGFANATSGKQQDSIDALRKATETSYFKGPDAVWVKLVIPTAPKGIGIDQFGPSDTQTSITVRR

Samples

Sample ID Description Type Environment
1 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
67 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
68 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
69 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
70 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
71 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
72 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
73 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
74 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
75 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
76 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
77 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
80 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
81 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
82 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
83 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
84 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
85 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
86 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
87 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
88 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
89 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
90 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
91 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
94 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
95 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
96 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
99 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
100 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
101 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
102 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
103 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
104 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
105 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
106 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
107 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
108 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
109 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
110 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
111 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
112 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
113 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
117 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
118 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
119 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
120 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
121 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
122 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
123 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
124 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
125 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
126 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
127 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
128 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
129 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
130 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
131 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
132 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
133 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.56
Metatranscriptomes 0
Isolates 0.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.72
Nodule 0
Rhizoplane 3.07
Rhizosphere 83.33
Stem 0
Stem Tuber 0
Unclassified 2.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207665_10013483 3300025939 Bacteria 5375
2 JGI25406J46586_10000946 3300003203 Bacteria 13679
3 JGI25406J46586_10002175 3300003203 Bacteria 9250
4 JGI25406J46586_10002617 3300003203 Bacteria 8485
5 JGI25406J46586_10008876 3300003203 Bacteria 4524
6 Ga0070683_100004999 3300005329 Bacteria 11007
7 Ga0070670_100001925 3300005331 Bacteria 16996
8 Ga0070670_100002258 3300005331 Bacteria 15849
9 Ga0070670_100013224 3300005331 Bacteria 7070
10 Ga0070670_100037052 3300005331 Bacteria 4196
11 Ga0070666_10019296 3300005335 Bacteria 4399
12 Ga0070660_100023200 3300005339 Bacteria 4596
13 Ga0070689_100023848 3300005340 Bacteria 4586
14 Ga0070689_100042449 3300005340 Bacteria 3492
15 Ga0070675_100010562 3300005354 Bacteria 7217
16 Ga0070675_100014609 3300005354 Bacteria 6192
17 Ga0070675_100045016 3300005354 Bacteria 3610
18 Ga0070671_100007664 3300005355 Bacteria 8631
19 Ga0070673_100009429 3300005364 Bacteria 6551
20 Ga0070688_100002573 3300005365 Bacteria 9188
21 Ga0070700_100009150 3300005441 Bacteria 5428
22 Ga0070681_10007165 3300005458 Bacteria 10861
23 Ga0068867_100009597 3300005459 Bacteria 6823
24 Ga0070679_100007015 3300005530 Bacteria 10510
25 Ga0068855_100024068 3300005563 Bacteria 7290
26 Ga0070664_100007394 3300005564 Bacteria 8861
27 Ga0070664_100008680 3300005564 Bacteria 8225
28 Ga0068859_100059552 3300005617 Bacteria 3847
29 Ga0068851_10003471 3300005834 Bacteria 7018
30 Ga0068863_100013671 3300005841 Bacteria 7827
31 Ga0068863_100062647 3300005841 Bacteria 3517
32 Ga0068858_100023715 3300005842 Bacteria 5716
33 Ga0068860_100013519 3300005843 Bacteria 8004
34 Ga0081455_10024788 3300005937 Bacteria 5546
35 Ga0081540_1030154 3300005983 Unclassified 3009
36 Ga0081539_10000017 3300005985 Bacteria 375107
37 Ga0081539_10000158 3300005985 Bacteria 157715
38 Ga0081539_10000355 3300005985 Bacteria 100784
39 Ga0081539_10001099 3300005985 Bacteria 49180
40 Ga0068871_100001443 3300006358 Bacteria 15900
41 Ga0068871_100002000 3300006358 Bacteria 13801
42 Ga0075428_100019265 3300006844 Bacteria 7550
43 Ga0075431_100057231 3300006847 Bacteria 4021
44 Ga0075433_10007712 3300006852 Bacteria 8552
45 Ga0075434_100022322 3300006871 Bacteria 6165
46 Ga0068865_100000678 3300006881 Bacteria 19202
47 Ga0097620_100059548 3300006931 Bacteria 3847
48 Ga0105240_10012986 3300009093 Bacteria 11473
49 Ga0105242_10031670 3300009176 Bacteria 4227
50 Ga0105248_10085559 3300009177 Bacteria 3548
51 Ga0105238_10000742 3300009551 Bacteria 34049
52 Ga0105238_10002861 3300009551 Bacteria 17245
53 Ga0105238_10009172 3300009551 Bacteria 9904
54 Ga0157370_10053526 3300013104 Bacteria 3848
55 Ga0163163_10053725 3300014325 Bacteria 3978
56 Ga0157379_10004268 3300014968 Bacteria 12204
57 Ga0157379_10046177 3300014968 Bacteria 3887
58 Ga0207680_10003862 3300025903 Bacteria 7058
59 Ga0207705_10002290 3300025909 Bacteria 14816
60 Ga0207707_10037806 3300025912 Bacteria 4217
61 Ga0207695_10003842 3300025913 Bacteria 20796
62 Ga0207695_10009724 3300025913 Bacteria 11836
63 Ga0207695_10013736 3300025913 Bacteria 9635
64 Ga0207695_10016267 3300025913 Bacteria 8716
65 Ga0207660_10043475 3300025917 Unclassified 3158
66 Ga0207657_10041037 3300025919 Bacteria 4094
67 Ga0207652_10001167 3300025921 Bacteria 23590
68 Ga0207652_10018897 3300025921 Bacteria 5658
69 Ga0207694_10005005 3300025924 Bacteria 10250
70 Ga0207694_10049468 3300025924 Bacteria 3254
71 Ga0207650_10005470 3300025925 Bacteria 8667
72 Ga0207650_10013002 3300025925 Bacteria 5757
73 Ga0207650_10017801 3300025925 Bacteria 4977
74 Ga0207659_10001628 3300025926 Bacteria 13325
75 Ga0207659_10014235 3300025926 Bacteria 5121
76 Ga0207659_10015188 3300025926 Bacteria 4983
77 Ga0207687_10012254 3300025927 Bacteria 5608
78 Ga0207687_10012748 3300025927 Bacteria 5492
79 Ga0207686_10006355 3300025934 Bacteria 6358
80 Ga0207686_10014952 3300025934 Bacteria 4331
81 Ga0207686_10026780 3300025934 Bacteria 3368
82 Ga0207709_10019297 3300025935 Bacteria 3831
83 Ga0207704_10010970 3300025938 Bacteria 4443
84 Ga0207711_10001470 3300025941 Bacteria 21974
85 Ga0207711_10002457 3300025941 Bacteria 16532
86 Ga0207711_10008189 3300025941 Bacteria 8752
87 Ga0207711_10015958 3300025941 Bacteria 6231
88 Ga0207689_10020515 3300025942 Bacteria 5561
89 Ga0207661_10007283 3300025944 Bacteria 7871
90 Ga0207679_10001925 3300025945 Bacteria 12875
91 Ga0207679_10005222 3300025945 Bacteria 8141
92 Ga0207679_10028438 3300025945 Unclassified 3879
93 Ga0207667_10003697 3300025949 Bacteria 18855
94 Ga0207667_10004795 3300025949 Bacteria 16536
95 Ga0207667_10019479 3300025949 Bacteria 7572
96 Ga0207667_10048559 3300025949 Unclassified 4487
97 Ga0207651_10005961 3300025960 Bacteria 6312
98 Ga0207641_10039145 3300026088 Bacteria 3964
99 Ga0207641_10052342 3300026088 Bacteria 3457
100 Ga0207641_10053606 3300026088 Bacteria 3419
101 Ga0207648_10064272 3300026089 Bacteria 3198
102 Ga0207676_10008259 3300026095 Bacteria 7405
103 Ga0207676_10037387 3300026095 Bacteria 3699
104 Ga0210000_1000880 3300027462 Bacteria 4165
105 Ga0207428_10000571 3300027907 Bacteria 43626
106 Ga0207428_10011462 3300027907 Bacteria 7835
107 Ga0207428_10019257 3300027907 Bacteria 5820
108 Ga0268264_10020579 3300028381 Bacteria 5391
109 Ga0265334_10008007 3300028573 Bacteria 4513
110 Ga0307515_10055270 3300028794 Bacteria 5806
111 Ga0265338_10014040 3300028800 Bacteria 8968
112 Ga0265338_10053092 3300028800 Bacteria 3630
113 Ga0265340_10014793 3300031247 Bacteria 4067
114 Ga0265327_10001665 3300031251 Bacteria 26722
115 Ga0307408_100014223 3300031548 Bacteria 5285
116 Ga0307408_100032996 3300031548 Bacteria 3614
117 Ga0265313_10004938 3300031595 Bacteria 9987
118 Ga0265313_10009414 3300031595 Bacteria 6347
119 Ga0265314_10000216 3300031711 Bacteria 85672
120 Ga0307405_10004533 3300031731 Bacteria 6578
121 Ga0307405_10025118 3300031731 Bacteria 3415
122 Ga0307413_10005496 3300031824 Bacteria 5663
123 Ga0307410_10009501 3300031852 Bacteria 5456
124 Ga0307416_100010564 3300032002 Bacteria 6106
125 Ga0307414_10037778 3300032004 Bacteria 3236
126 Ga0373945_0007956 3300035116 Bacteria 3441
127 Ga0373954_0002430 3300035118 Bacteria 7804
128 Ga0373956_0011495 3300035119 Bacteria 3649
129 Ga0373946_0005046 3300035171 Bacteria 4754
130 Ga0373955_0006904 3300035172 Bacteria 5191
131 Ga0373933_0039027 3300035724 Bacteria 2793
132 Ga0373937_0001934 3300036401 Bacteria 17332
133 Ga0373925_0024950 3300037068 Bacteria 4366
134 Ga0395901_0081774 3300038443 Bacteria 3374
135 Ga0439462_0000303 3300042015 Bacteria 9148
136 Ga0439462_0000513 3300042015 Bacteria 7642
137 Ga0451576_0045924 3300045051 Bacteria 4599
138 Ga0495592_0001409 3300046454 Bacteria 16666
139 Ga0495603_0020818 3300046455 Bacteria 3971
140 Ga0495638_0039654 3300046460 Bacteria 2989
141 Ga0495582_0024095 3300046473 Bacteria 3328
142 Ga0495594_0020751 3300046499 Bacteria 3502
143 Ga0495608_0005067 3300046511 Bacteria 9416
144 Ga0495608_0008818 3300046511 Bacteria 7056
145 Ga0495608_0014169 3300046511 Bacteria 5532
146 Ga0495630_0023875 3300046517 Bacteria 4520
147 Ga0495643_0007886 3300046522 Bacteria 6802
148 Ga0495643_0011098 3300046522 Bacteria 5506
149 Ga0495643_0016031 3300046522 Bacteria 4411
150 Ga0495587_0006137 3300046536 Bacteria 7840
151 Ga0495621_0003227 3300046539 Bacteria 4480
152 Ga0495645_0004324 3300046543 Bacteria 9704
153 Ga0495667_0000329 3300046559 Bacteria 29958
154 Ga0495667_0001152 3300046559 Bacteria 17238
155 Ga0495667_0029138 3300046559 Bacteria 3715
156 Ga0495625_0007652 3300046660 Bacteria 9365
157 Ga0495625_0021553 3300046660 Bacteria 4959
158 Ga0495657_0005291 3300046675 Bacteria 10215
159 Ga0495647_0007317 3300046681 Bacteria 3693
160 Ga0495647_0007947 3300046681 Unclassified 3564
161 Ga0495613_0000380 3300046689 Bacteria 38251
162 Ga0495674_0008857 3300047319 Bacteria 9575
163 Ga0495674_0073567 3300047319 Bacteria 2945
164 Ga0495673_0034130 3300047469 Bacteria 2354
165 Ga0495684_0000432 3300047471 Bacteria 34197
166 Ga0496100_0017788 3300048903 Bacteria 4204
167 Ga0496101_0003409 3300048904 Bacteria 9915
168 Ga0496109_0024738 3300048912 Bacteria 5342
169 Ga0496112_0011316 3300048915 Bacteria 8140
170 Ga0496114_0000473 3300048917 Bacteria 29434
171 Ga0496114_0004487 3300048917 Bacteria 10832
172 Ga0496114_0013440 3300048917 Bacteria 6563
173 Ga0501042_0064034 3300049578 Bacteria 2627
174 Ga0501046_0035320 3300049580 Bacteria 4029
175 Ga0501075_0034800 3300049591 Bacteria 3752
176 Ga0501079_0036594 3300049741 Bacteria 3781
177 Ga0501044_0059167 3300049823 Bacteria 3927
178 nmdc:mga05p37_29870_c1 3300050507 Bacteria 6651
179 nmdc:mga06r32_30622_c1 3300050510 Bacteria 5050
180 nmdc:mga06r32_51247_c1 3300050510 Bacteria 3950
181 nmdc:mga08y16_14238_c1 3300050511 Bacteria 8372
182 nmdc:mga08y16_22688_c1 3300050511 Bacteria 6628
183 nmdc:mga08y16_39268_c1 3300050511 Bacteria 4967
184 nmdc:mga0n895_13257_c1 3300050512 Bacteria 7428
185 nmdc:mga0n895_82358_c1 3300050512 Bacteria 3208
186 nmdc:mga0a205_14037_c1 3300050515 Bacteria 7471
187 nmdc:mga0a205_15197_c1 3300050515 Bacteria 7192
188 nmdc:mga0a205_52152_c1 3300050515 Bacteria 3949
189 Ga0495601_0007261 3300053077 Bacteria 6499
190 Ga0495601_0020367 3300053077 Bacteria 4050
191 Ga0500643_000001 3300053087 Bacteria 1440111
192 Ga0500643_000039 3300053087 Bacteria 169629
193 Ga0500643_001866 3300053087 Bacteria 11484
194 Ga0500641_0003062 3300053096 Bacteria 5929
195 Ga0500556_0000014 3300053104 Bacteria 232989
196 Ga0500556_0000027 3300053104 Bacteria 165855
197 Ga0500556_0000416 3300053104 Bacteria 30640
198 Ga0500572_000213 3300053111 Bacteria 20610
199 Ga0500642_0000001 3300053130 Bacteria 1468402
200 Ga0500642_0000003 3300053130 Bacteria 544899
201 Ga0500568_0001549 3300053139 Bacteria 14599
202 Ga0500616_0004203 3300053153 Bacteria 10378
203 Ga0500616_0005959 3300053153 Bacteria 8130
204 Ga0500616_0012548 3300053153 Bacteria 4956
205 Ga0500645_000043 3300053730 Bacteria 109920
206 Ga0500645_000362 3300053730 Bacteria 32311
207 Ga0500645_000959 3300053730 Bacteria 16412
208 Ga0500645_001290 3300053730 Bacteria 13052
209 2643949766 2643221588 Bacteria 3692460
210 Ga0207665_10013483
211 JGI25406J46586_10000946
212 JGI25406J46586_10002175
213 JGI25406J46586_10002617
214 JGI25406J46586_10008876
215 Ga0070683_100004999
216 Ga0070670_100001925
217 Ga0070670_100002258
218 Ga0070670_100013224
219 Ga0070670_100037052
220 Ga0070666_10019296
221 Ga0070660_100023200
222 Ga0070689_100023848
223 Ga0070689_100042449
224 Ga0070675_100010562
225 Ga0070675_100014609
226 Ga0070675_100045016
227 Ga0070671_100007664
228 Ga0070673_100009429
229 Ga0070688_100002573
230 Ga0070700_100009150
231 Ga0070681_10007165
232 Ga0068867_100009597
233 Ga0070679_100007015
234 Ga0068855_100024068
235 Ga0070664_100007394
236 Ga0070664_100008680
237 Ga0068859_100059552
238 Ga0068851_10003471
239 Ga0068863_100013671
240 Ga0068863_100062647
241 Ga0068858_100023715
242 Ga0068860_100013519
243 Ga0081455_10024788
244 Ga0081540_1030154
245 Ga0081539_10000017
246 Ga0081539_10000158
247 Ga0081539_10000355
248 Ga0081539_10001099
249 Ga0068871_100001443
250 Ga0068871_100002000
251 Ga0075428_100019265
252 Ga0075431_100057231
253 Ga0075433_10007712
254 Ga0075434_100022322
255 Ga0068865_100000678
256 Ga0097620_100059548
257 Ga0105240_10012986
258 Ga0105242_10031670
259 Ga0105248_10085559
260 Ga0105238_10000742
261 Ga0105238_10002861
262 Ga0105238_10009172
263 Ga0157370_10053526
264 Ga0163163_10053725
265 Ga0157379_10004268
266 Ga0157379_10046177
267 Ga0207680_10003862
268 Ga0207705_10002290
269 Ga0207707_10037806
270 Ga0207695_10003842
271 Ga0207695_10009724
272 Ga0207695_10013736
273 Ga0207695_10016267
274 Ga0207660_10043475
275 Ga0207657_10041037
276 Ga0207652_10001167
277 Ga0207652_10018897
278 Ga0207694_10005005
279 Ga0207694_10049468
280 Ga0207650_10005470
281 Ga0207650_10013002
282 Ga0207650_10017801
283 Ga0207659_10001628
284 Ga0207659_10014235
285 Ga0207659_10015188
286 Ga0207687_10012254
287 Ga0207687_10012748
288 Ga0207686_10006355
289 Ga0207686_10014952
290 Ga0207686_10026780
291 Ga0207709_10019297
292 Ga0207704_10010970
293 Ga0207711_10001470
294 Ga0207711_10002457
295 Ga0207711_10008189
296 Ga0207711_10015958
297 Ga0207689_10020515
298 Ga0207661_10007283
299 Ga0207679_10001925
300 Ga0207679_10005222
301 Ga0207679_10028438
302 Ga0207667_10003697
303 Ga0207667_10004795
304 Ga0207667_10019479
305 Ga0207667_10048559
306 Ga0207651_10005961
307 Ga0207641_10039145
308 Ga0207641_10052342
309 Ga0207641_10053606
310 Ga0207648_10064272
311 Ga0207676_10008259
312 Ga0207676_10037387
313 Ga0210000_1000880
314 Ga0207428_10000571
315 Ga0207428_10011462
316 Ga0207428_10019257
317 Ga0268264_10020579
318 Ga0265334_10008007
319 Ga0307515_10055270
320 Ga0265338_10014040
321 Ga0265338_10053092
322 Ga0265340_10014793
323 Ga0265327_10001665
324 Ga0307408_100014223
325 Ga0307408_100032996
326 Ga0265313_10004938
327 Ga0265313_10009414
328 Ga0265314_10000216
329 Ga0307405_10004533
330 Ga0307405_10025118
331 Ga0307413_10005496
332 Ga0307410_10009501
333 Ga0307416_100010564
334 Ga0307414_10037778
335 Ga0373945_0007956
336 Ga0373954_0002430
337 Ga0373956_0011495
338 Ga0373946_0005046
339 Ga0373955_0006904
340 Ga0373933_0039027
341 Ga0373937_0001934
342 Ga0373925_0024950
343 Ga0395901_0081774
344 Ga0439462_0000303
345 Ga0439462_0000513
346 Ga0451576_0045924
347 Ga0495592_0001409
348 Ga0495603_0020818
349 Ga0495638_0039654
350 Ga0495582_0024095
351 Ga0495594_0020751
352 Ga0495608_0005067
353 Ga0495608_0008818
354 Ga0495608_0014169
355 Ga0495630_0023875
356 Ga0495643_0007886
357 Ga0495643_0011098
358 Ga0495643_0016031
359 Ga0495587_0006137
360 Ga0495621_0003227
361 Ga0495645_0004324
362 Ga0495667_0000329
363 Ga0495667_0001152
364 Ga0495667_0029138
365 Ga0495625_0007652
366 Ga0495625_0021553
367 Ga0495657_0005291
368 Ga0495647_0007317
369 Ga0495647_0007947
370 Ga0495613_0000380
371 Ga0495674_0008857
372 Ga0495674_0073567
373 Ga0495673_0034130
374 Ga0495684_0000432
375 Ga0496100_0017788
376 Ga0496101_0003409
377 Ga0496109_0024738
378 Ga0496112_0011316
379 Ga0496114_0000473
380 Ga0496114_0004487
381 Ga0496114_0013440
382 Ga0501042_0064034
383 Ga0501046_0035320
384 Ga0501075_0034800
385 Ga0501079_0036594
386 Ga0501044_0059167
387 nmdc:mga05p37_29870_c1
388 nmdc:mga06r32_30622_c1
389 nmdc:mga06r32_51247_c1
390 nmdc:mga08y16_14238_c1
391 nmdc:mga08y16_22688_c1
392 nmdc:mga08y16_39268_c1
393 nmdc:mga0n895_13257_c1
394 nmdc:mga0n895_82358_c1
395 nmdc:mga0a205_14037_c1
396 nmdc:mga0a205_15197_c1
397 nmdc:mga0a205_52152_c1
398 Ga0495601_0007261
399 Ga0495601_0020367
400 Ga0500643_000001
401 Ga0500643_000039
402 Ga0500643_001866
403 Ga0500641_0003062
404 Ga0500556_0000014
405 Ga0500556_0000027
406 Ga0500556_0000416
407 Ga0500572_000213
408 Ga0500642_0000001
409 Ga0500642_0000003
410 Ga0500568_0001549
411 Ga0500616_0004203
412 Ga0500616_0005959
413 Ga0500616_0012548
414 Ga0500645_000043
415 Ga0500645_000362
416 Ga0500645_000959
417 Ga0500645_001290
418 2643949766

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

29

78

0.94

PF10162

G8

G8 domain

175

298

0.86

PF24606

391

611

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
8c6i-assembly1.cif.gz_A tmem2 ectodomain 0.8217 64 851
8c6i-assembly1.cif.gz_A tmem2 ectodomain 0.763 64 851
7dqd-assembly2.cif.gz_L crystal structure of the amp-pnp-bound mutant a(s23c)3b(n64c)3 complex from enterococcus hirae v-atpase 0.6745 176 251
7uzf-assembly1.cif.gz_F rat kidney v-atpase with sidk, state 1 0.6127 166 250
8igv-assembly1.cif.gz_D hexameric ring complex of engineered v1-atpase bound to 5 adps: a3(de)3_(adp-pi)1cat(adp)2cat,2non-cat 0.6061 173 251
ID Description Score Start End Superfamily
af_Q54KF6_174_1099_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.8265 177 851 2.160.20.10
af_Q9UHN6_357_1242_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.8075 184 851 2.160.20.10
af_Q54XG9_692_1415_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.7655 177 851 2.160.20.10
af_P08F94_2179_2446_2.160.20.80 Mainly Beta;3 Solenoid;Pectate Lyase C-like;E3 ubiquitin-protein ligase SopA 0.7167 272 573 2.160.20.80
af_Q54XG9_692_1415_2.160.20.10 Mainly Beta;3 Solenoid;Pectate Lyase C-like;Single-stranded right-handed beta-helix, Pectin lyase-like 0.7159 177 851 2.160.20.10
ID Description Score Start End GO Terms
AF-A0A7S1ZN70-F1-model_v4 Right handed beta helix domain-containing protein 0.981 291 368
AF-A0A4Q6B5E0-F1-model_v4 Transmembrane domain-containing protein 0.9734 38 380 GO:0005886
AF-A0A2W4L8R8-F1-model_v4 Transmembrane domain-containing protein 0.971 111 660 GO:0005886
GO:0016798
AF-A0A3S1BVG1-F1-model_v4 G8 domain-containing protein 0.9691 43 131
AF-A0A832R6Z9-F1-model_v4 Transmembrane domain-containing protein 0.9689 43 691 GO:0005886

Map