F340467

General Info

Members Datasets Scaffolds Average Seq Length
227 158 186 478

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2747842501|2748017255
Length 529
Sequence MRTQMFGLIAMTLPLAACAQQTAPAPAAKASAPIAANRSTTPAPQLVAGLPDFTNLVEQVGPGVVNIETTITRKDAMARSARGGRGGQGGMPGQGGMPDDEQMPEFFKRFFGPDFQMPGGPRQGPGQGGGDDDGGIAGKSMGSGFIISADGYVLTNHHVVDGASEVTVKLTDRREFKAKVVGSDEQFDVALLKIEAKGLPTVRLGDSNTLKPGQWVVAIGSPFGLDHSVTAGIVSATGRSNPYADQRYVPFIQTDVAINQGNSGGPLLNTRGEVVGINSQIFSASGGYMGISFAIPIDLAFSAAEQIKATGRVSRGMLGVQVGAIDSLKAQGLGLPDSRGALVNDIPAGSPAAKAGVEVGDVIRAVNGKPIEVASDLPPMIGLMPPGAKVNLDILRDGKPRQVSVVLAPLQDGSEDAAPRTAAADAKPEAPASVALLGLQVADLTAAERSRLGLEAGEGVRIAAVTGVAARSTQPPLSPGLLIARVGRTKVGSVAELNRALSSYKKGDVVMLLVTDGKATSYVALKAGG

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2576861471 Stenotrophomonas rhizophila DSM 14405 Isolate Rhizosphere
3 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
4 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
5 2747842428 Stenotrophomonas sp. WCS2014-113 Isolate Unclassified
6 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
7 2765235840 Stenotrophomonas maltophilia AA1 Isolate Unclassified
8 2816332141 Stenotrophomonas muris 1190 (v2) (version 2) Isolate Unclassified
9 2818991457 Xanthomonas translucens 569 Isolate Unclassified
10 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
11 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
12 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
13 2852649853 Stenotrophomonas sp. JAI102 Isolate Rhizosphere
14 2852684882 Xanthomonas sp. JAI131 Isolate Rhizosphere
15 2857442823 Stenotrophomonas sp. R-74235 Isolate Unclassified
16 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
17 2895498888 Pseudoxanthomonas sp. SGD-10 Isolate Rhizosphere
18 2895511927 Pseudoxanthomonas sp. SGD-5-1 Isolate Rhizosphere
19 2895522137 Pseudoxanthomonas sp. SGNA-20 Isolate Rhizosphere
20 2895525241 Pseudoxanthomonas sp. SGT-18 Isolate Rhizosphere
21 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
22 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
23 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
24 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
25 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
26 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
27 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
28 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
29 2939589442 Stenotrophomonas rhizophila 716 Isolate Rhizosphere
30 2939622612 Stenotrophomonas sp. 2619 Isolate Rhizosphere
31 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
32 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
33 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
34 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
35 2974307012 Stenotrophomonas sp. SORGH_AS_0282 Isolate Unclassified
36 2977247770 Stenotrophomonas rhizophila SORGH_AS 457 Isolate Unclassified
37 2984514374 Stenotrophomonas sp. SORGH_AS282 Isolate Aerial Root
38 2987605356 Stenotrophomonas sp. ATCM1_4 Isolate Unclassified
39 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
40 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
41 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
42 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
43 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
44 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
45 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
46 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
47 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
48 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
49 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
50 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
51 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
52 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
53 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
54 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
55 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
56 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
57 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
58 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
59 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
60 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
61 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
62 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
63 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
64 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
65 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
66 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
67 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
68 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
69 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
70 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
71 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
72 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
73 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
74 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
75 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
76 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
77 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
80 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
81 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
82 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
83 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
84 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
85 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
87 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
98 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
99 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
100 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
101 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
102 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
103 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
104 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
105 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
106 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
107 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
108 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
109 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
110 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
111 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
112 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
113 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
114 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
115 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
116 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
117 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
118 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
119 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
120 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
121 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
122 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
123 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
124 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
125 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
128 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
129 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
130 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
131 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
134 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
135 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
136 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
137 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
138 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
147 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
148 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
149 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
151 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
152 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
153 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
154 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
155 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
156 8021622325 Xanthomonas sp. LMG12462 Isolate Rhizosphere
157 8021626552 Xanthomonas sp. LMG12460 Isolate Rhizosphere
158 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.94
Metatranscriptomes 0
Isolates 18.06

Biome Distribution

Category Percentage (%)
Aerial Root 0.44
Bulb 0
Endosphere 18.06
Nodule 0.44
Rhizoplane 1.76
Rhizosphere 48.46
Stem 0
Stem Tuber 0
Unclassified 30.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_341226 2162886007 Bacteria 1868
2 JGI25152J39213_1000018 3300002773 Bacteria 109715
3 JGI25151J46595_10000111 3300003187 Bacteria 111802
4 JGI25153J46596_10000085 3300003215 Bacteria 111802
5 Ga0055526_1001785 3300003771 Bacteria 14939
6 Ga0055537_1000306 3300003773 Bacteria 33928
7 Ga0055536_1004392 3300003781 Bacteria 7232
8 Ga0055536_1011905 3300003781 Bacteria 3280
9 Ga0055536_1011920 3300003781 Bacteria 3277
10 Ga0055534_1000388 3300003784 Bacteria 27515
11 Ga0055528_1001434 3300003790 Bacteria 14584
12 Ga0055530_10013515 3300003791 Bacteria 2782
13 Ga0055530_10013701 3300003791 Bacteria 2749
14 Ga0055531_10004339 3300003794 Bacteria 8673
15 Ga0055531_10015927 3300003794 Bacteria 3277
16 Ga0058692_1000011 3300003856 Bacteria 321321
17 Ga0058692_1000024 3300003856 Bacteria 219702
18 Ga0065704_10111165 3300005289 Bacteria 1963
19 Ga0070666_10006175 3300005335 Bacteria 7369
20 Ga0070668_100043942 3300005347 Bacteria 3426
21 Ga0070669_100022958 3300005353 Bacteria 4463
22 Ga0070685_10000308 3300005466 Bacteria 30701
23 Ga0070665_100008106 3300005548 Bacteria 10634
24 Ga0070665_100124333 3300005548 Bacteria 2581
25 Ga0075365_10056570 3300006038 Bacteria 2608
26 Ga0075364_10000037 3300006051 Bacteria 47111
27 Ga0075364_10034231 3300006051 Bacteria 3276
28 Ga0075434_100046428 3300006871 Bacteria 4310
29 Ga0105251_10001213 3300009011 Bacteria 22282
30 Ga0105251_10004227 3300009011 Bacteria 9925
31 Ga0105244_10015737 3300009036 Bacteria 4330
32 Ga0105240_10001717 3300009093 Bacteria 36977
33 Ga0105243_10027110 3300009148 Bacteria 4388
34 Ga0105238_10048807 3300009551 Bacteria 4265
35 Ga0105028_100971 3300009993 Bacteria 3013
36 Ga0105239_10145279 3300010375 Bacteria 2645
37 Ga0157373_10077462 3300013100 Bacteria 2346
38 Ga0157371_10000588 3300013102 Bacteria 43132
39 Ga0157371_10042706 3300013102 Bacteria 3232
40 Ga0157370_10054606 3300013104 Bacteria 3808
41 Ga0163162_10000016 3300013306 Bacteria 250836
42 Ga0182008_10000509 3300014497 Bacteria 29220
43 Ga0182008_10019541 3300014497 Bacteria 3496
44 Ga0182006_1014793 3300015261 Bacteria 3356
45 Ga0182007_10000191 3300015262 Bacteria 41295
46 Ga0182005_1005813 3300015265 Bacteria 3826
47 Ga0163161_10001189 3300017792 Bacteria 19555
48 Ga0163161_10043733 3300017792 Bacteria 3226
49 Ga0207425_1000028 3300025245 Bacteria 286333
50 Ga0209129_1000065 3300025258 Bacteria 232568
51 Ga0209565_1000023 3300025263 Bacteria 388244
52 Ga0209673_1000866 3300025273 Bacteria 39283
53 Ga0209130_1017450 3300025284 Bacteria 1709
54 Ga0209675_1000048 3300025291 Bacteria 221457
55 Ga0209676_1000034 3300025292 Bacteria 460125
56 Ga0209676_1000091 3300025292 Bacteria 251328
57 Ga0209676_1000117 3300025292 Bacteria 203251
58 Ga0209025_1000002 3300025294 Bacteria 1393142
59 Ga0209564_1000106 3300025295 Bacteria 216131
60 Ga0209758_1000003 3300025297 Bacteria 1398533
61 Ga0209050_1000175 3300025298 Bacteria 146845
62 Ga0209050_1000206 3300025298 Bacteria 131913
63 Ga0209050_1017608 3300025298 Bacteria 2833
64 Ga0209256_1007787 3300025299 Bacteria 5168
65 Ga0209051_1001280 3300025303 Bacteria 22332
66 Ga0209257_1000062 3300025304 Bacteria 362413
67 Ga0209257_1000320 3300025304 Bacteria 100514
68 Ga0209257_1000492 3300025304 Bacteria 71085
69 Ga0209257_1000745 3300025304 Bacteria 49164
70 Ga0207713_1001220 3300025735 Bacteria 21475
71 Ga0207695_10000033 3300025913 Bacteria 507477
72 Ga0207694_10000487 3300025924 Bacteria 35975
73 Ga0207694_10019316 3300025924 Bacteria 5152
74 Ga0207709_10000841 3300025935 Bacteria 23530
75 Ga0207668_10012078 3300025972 Bacteria 5274
76 Ga0207683_10111398 3300026121 Bacteria 2451
77 Ga0209371_1000007 3300027312 Bacteria 1050654
78 Ga0209371_1000016 3300027312 Bacteria 646301
79 Ga0268266_10044831 3300028379 Bacteria 3781
80 Ga0265324_10000010 3300029957 Bacteria 252917
81 Ga0268256_1000008 3300030500 Bacteria 1050654
82 Ga0268256_1000015 3300030500 Bacteria 646300
83 Ga0307508_10006422 3300031616 Bacteria 11053
84 Ga0265314_10033500 3300031711 Bacteria 3766
85 Ga0316576_10015292 3300031727 Bacteria 5148
86 Ga0316578_10065491 3300031728 Bacteria 2145
87 Ga0316577_10075043 3300031733 Bacteria 1888
88 Ga0307413_10014684 3300031824 Bacteria 3988
89 Ga0307412_10039576 3300031911 Bacteria 3045
90 Ga0307414_10018104 3300032004 Bacteria 4326
91 Ga0307414_10040298 3300032004 Bacteria 3153
92 Ga0307414_10107708 3300032004 Bacteria 2112
93 Ga0316574_0023479 3300035398 Bacteria 3681
94 Ga0316574_0038497 3300035398 Bacteria 2936
95 Ga0395905_0117142 3300037471 Bacteria 2503
96 Ga0439436_0010736 3300041404 Bacteria 2791
97 Ga0439465_0000408 3300041413 Bacteria 12500
98 Ga0439431_0002243 3300041997 Bacteria 4263
99 Ga0439445_0001846 3300042004 Bacteria 4657
100 Ga0439445_0027315 3300042004 Bacteria 1465
101 Ga0439449_0000369 3300042007 Bacteria 16554
102 Ga0439449_0014265 3300042007 Bacteria 2987
103 Ga0439449_0025351 3300042007 Bacteria 2217
104 Ga0466970_0025875 3300044765 Bacteria 3074
105 Ga0495638_0004358 3300046460 Bacteria 10718
106 Ga0495643_0011587 3300046522 Bacteria 5361
107 Ga0495663_0006515 3300046525 Bacteria 3223
108 Ga0495633_0009816 3300046558 Bacteria 5260
109 Ga0495633_0009822 3300046558 Bacteria 5258
110 Ga0495625_0051821 3300046660 Bacteria 2940
111 Ga0495625_0141809 3300046660 Bacteria 1620
112 Ga0495660_0050790 3300046810 Bacteria 2258
113 Ga0495672_0000704 3300047320 Bacteria 36769
114 Ga0495686_0052185 3300047472 Bacteria 2564
115 Ga0496104_0071542 3300048907 Bacteria 3298
116 Ga0496105_0019368 3300048908 Bacteria 5489
117 Ga0496106_0016812 3300048909 Bacteria 5412
118 Ga0496114_0024461 3300048917 Bacteria 4931
119 Ga0496116_0034459 3300048919 Bacteria 3571
120 Ga0496116_0034622 3300048919 Bacteria 3561
121 Ga0496116_0051815 3300048919 Bacteria 2723
122 Ga0496117_0002384 3300048920 Bacteria 23906
123 Ga0496117_0008191 3300048920 Bacteria 9973
124 Ga0496117_0033987 3300048920 Bacteria 3849
125 Ga0496117_0040790 3300048920 Bacteria 3409
126 Ga0496118_0001072 3300048921 Bacteria 42721
127 Ga0496118_0008467 3300048921 Bacteria 10626
128 Ga0496118_0016367 3300048921 Bacteria 6807
129 Ga0496118_0016618 3300048921 Bacteria 6742
130 Ga0496118_0029245 3300048921 Bacteria 4624
131 Ga0496118_0062003 3300048921 Bacteria 2764
132 Ga0496118_0089690 3300048921 Bacteria 2121
133 Ga0496119_0003019 3300048922 Bacteria 17817
134 Ga0496119_0010017 3300048922 Bacteria 8021
135 Ga0496119_0045988 3300048922 Bacteria 2730
136 Ga0496120_0002446 3300048923 Bacteria 18787
137 Ga0496120_0005492 3300048923 Bacteria 10089
138 Ga0496121_0050539 3300048924 Bacteria 3511
139 Ga0496121_0068730 3300048924 Bacteria 2864
140 Ga0496122_0000560 3300048925 Bacteria 76145
141 Ga0496122_0004663 3300048925 Bacteria 16836
142 Ga0496122_0004932 3300048925 Bacteria 16181
143 Ga0496122_0034128 3300048925 Bacteria 4170
144 Ga0496122_0062936 3300048925 Bacteria 2712
145 Ga0496123_0000647 3300048926 Bacteria 58089
146 Ga0496123_0004607 3300048926 Bacteria 14348
147 Ga0496123_0037323 3300048926 Bacteria 3431
148 Ga0496123_0047412 3300048926 Bacteria 2903
149 Ga0496123_0052869 3300048926 Bacteria 2689
150 Ga0496123_0077304 3300048926 Bacteria 2044
151 Ga0496124_0000018 3300048927 Bacteria 442940
152 Ga0496124_0004012 3300048927 Bacteria 17520
153 Ga0496124_0007400 3300048927 Bacteria 11678
154 Ga0496124_0072848 3300048927 Bacteria 2843
155 Ga0496124_0075017 3300048927 Bacteria 2794
156 Ga0496124_0091697 3300048927 Bacteria 2475
157 Ga0496124_0150856 3300048927 Bacteria 1823
158 Ga0496125_0008533 3300048928 Bacteria 10711
159 Ga0496125_0027877 3300048928 Bacteria 5111
160 Ga0496125_0035278 3300048928 Bacteria 4392
161 Ga0496125_0049703 3300048928 Bacteria 3480
162 Ga0496125_0060123 3300048928 Bacteria 3056
163 Ga0496125_0064072 3300048928 Bacteria 2925
164 Ga0496125_0073940 3300048928 Bacteria 2645
165 Ga0496126_0003166 3300048929 Bacteria 21193
166 Ga0496126_0060316 3300048929 Bacteria 3412
167 Ga0496126_0132810 3300048929 Bacteria 2149
168 Ga0501031_0006041 3300049568 Bacteria 7902
169 Ga0501032_0022442 3300049569 Bacteria 4374
170 Ga0501034_0000598 3300049571 Bacteria 56882
171 Ga0501034_0010186 3300049571 Bacteria 9807
172 Ga0501034_0032530 3300049571 Bacteria 5295
173 Ga0501036_0011924 3300049572 Bacteria 7205
174 Ga0501037_0002138 3300049573 Bacteria 14302
175 Ga0501038_0007136 3300049574 Bacteria 10323
176 Ga0501046_0000003 3300049580 Bacteria 496142
177 Ga0501047_0032159 3300049581 Bacteria 5063
178 Ga0501071_0079854 3300049587 Bacteria 2392
179 Ga0501225_0017708 3300049705 Bacteria 1977
180 Ga0501080_0002950 3300049742 Bacteria 14958
181 Ga0501035_0007542 3300049822 Bacteria 10167
182 Ga0501044_0010361 3300049823 Bacteria 10116
183 nmdc:mga00v17_103016_c1 3300050491 Bacteria 1804
184 nmdc:mga0yw44_9677_c1 3300050492 Bacteria 4892
185 nmdc:mga0n895_15453_c1 3300050512 Bacteria 6961
186 Ga0500634_0000054 3300053161 Bacteria 51788

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048920 Ga0496117_0002384 Ga0496117_0002384_6312_7868 406
2 3300048922 Ga0496119_0003019 Ga0496119_0003019_15714_17270 406
3 3300048923 Ga0496120_0002446 Ga0496120_0002446_16043_17599 406
4 3300042004 Ga0439445_0027315 Ga0439445_0027315_33_1304 407
5 3300009011 Ga0105251_10001213 Ga0105251_100012138 413
6 3300025735 Ga0207713_1001220 Ga0207713_10012207 413
7 3300048921 Ga0496118_0016618 Ga0496118_0016618_4663_6213 416
8 3300048927 Ga0496124_0004012 Ga0496124_0004012_15887_17437 417
9 3300048925 Ga0496122_0004663 Ga0496122_0004663_80_1630 419
10 3300048926 Ga0496123_0000647 Ga0496123_0000647_41077_42837 422
11 3300013104 Ga0157370_10054606 Ga0157370_100546062 427
12 3300014497 Ga0182008_10000509 Ga0182008_1000050921 427
13 3300048920 Ga0496117_0040790 Ga0496117_0040790_1649_3163 427
14 3300048921 Ga0496118_0008467 Ga0496118_0008467_1113_2627 427
15 3300048926 Ga0496123_0077304 Ga0496123_0077304_466_1980 427
16 3300048927 Ga0496124_0072848 Ga0496124_0072848_975_2489 427
17 3300048928 Ga0496125_0008533 Ga0496125_0008533_8522_10036 427
18 3300017792 Ga0163161_10001189 Ga0163161_100011892 428
19 3300017792 Ga0163161_10043733 Ga0163161_100437333 428
20 3300048922 Ga0496119_0010017 Ga0496119_0010017_854_2389 428
21 3300048923 Ga0496120_0005492 Ga0496120_0005492_7310_8845 428
22 3300048926 Ga0496123_0047412 Ga0496123_0047412_1368_2882 428
23 3300046460 Ga0495638_0004358 Ga0495638_0004358_511_2031 429
24 3300048909 Ga0496106_0016812 Ga0496106_0016812_3924_5342 429
25 3300013102 Ga0157371_10000588 Ga0157371_100005882 430
26 3300032004 Ga0307414_10107708 Ga0307414_101077082 430
27 3300048908 Ga0496105_0019368 Ga0496105_0019368_3467_4996 430
28 3300048928 Ga0496125_0060123 Ga0496125_0060123_1032_2561 430
29 3300048929 Ga0496126_0003166 Ga0496126_0003166_18831_20360 430
30 3300006038 Ga0075365_10056570 Ga0075365_100565702 431
31 3300050492 nmdc:mga0yw44_9677_c1 nmdc:mga0yw44_9677_c1_3113_4600 431
32 3300048925 Ga0496122_0004932 Ga0496122_0004932_14112_15677 432
33 3300048926 Ga0496123_0037323 Ga0496123_0037323_452_2017 432
34 3300048907 Ga0496104_0071542 Ga0496104_0071542_87_1622 433
35 3300050491 nmdc:mga00v17_103016_c1 nmdc:mga00v17_103016_c1_18_1574 434
36 3300010375 Ga0105239_10145279 Ga0105239_101452792 438
37 3300035398 Ga0316574_0038497 Ga0316574_0038497_962_2347 438
38 3300006871 Ga0075434_100046428 Ga0075434_1000464282 439
39 3300002773 JGI25152J39213_1000018 JGI25152J39213_10000184 440
40 3300003187 JGI25151J46595_10000111 JGI25151J46595_100001115 440
41 3300003215 JGI25153J46596_10000085 JGI25153J46596_1000008597 440
42 3300025245 Ga0207425_1000028 Ga0207425_1000028174 440
43 3300025258 Ga0209129_1000065 Ga0209129_1000065122 440
44 3300025294 Ga0209025_1000002 Ga0209025_100000298 440
45 3300025297 Ga0209758_1000003 Ga0209758_1000003105 440
46 3300035398 Ga0316574_0023479 Ga0316574_0023479_1610_3010 440
47 3300005548 Ga0070665_100008106 Ga0070665_1000081068 441
48 3300025924 Ga0207694_10019316 Ga0207694_100193162 441
49 3300028379 Ga0268266_10044831 Ga0268266_100448312 441
50 3300025304 Ga0209257_1000492 Ga0209257_100049262 442
51 3300050512 nmdc:mga0n895_15453_c1 nmdc:mga0n895_15453_c1_2822_4249 442
52 3300013306 Ga0163162_10000016 Ga0163162_10000016195 443
53 3300031727 Ga0316576_10015292 Ga0316576_100152924 443
54 3300031733 Ga0316577_10075043 Ga0316577_100750431 443
55 3300048929 Ga0496126_0060316 Ga0496126_0060316_1181_2746 443
56 3300009551 Ga0105238_10048807 Ga0105238_100488074 444
57 3300048921 Ga0496118_0062003 Ga0496118_0062003_986_2515 444
58 3300003856 Ga0058692_1000024 Ga0058692_10000244 446
59 3300027312 Ga0209371_1000016 Ga0209371_1000016564 446
60 3300030500 Ga0268256_1000015 Ga0268256_10000155 446
61 3300031728 Ga0316578_10065491 Ga0316578_100654912 446
62 3300046525 Ga0495663_0006515 Ga0495663_0006515_1051_2577 446
63 3300031616 Ga0307508_10006422 Ga0307508_100064226 448
64 3300031824 Ga0307413_10014684 Ga0307413_100146842 448
65 3300048922 Ga0496119_0045988 Ga0496119_0045988_206_1711 448
66 3300048925 Ga0496122_0062936 Ga0496122_0062936_220_1725 448
67 3300048926 Ga0496123_0052869 Ga0496123_0052869_193_1698 448
68 3300048928 Ga0496125_0073940 Ga0496125_0073940_155_1660 448
69 3300046522 Ga0495643_0011587 Ga0495643_0011587_3345_4874 451
70 3300046660 Ga0495625_0051821 Ga0495625_0051821_1369_2898 451
71 3300046660 Ga0495625_0141809 Ga0495625_0141809_49_1578 451
72 3300047320 Ga0495672_0000704 Ga0495672_0000704_34734_36263 451
73 3300047472 Ga0495686_0052185 Ga0495686_0052185_488_2017 451
74 3300015262 Ga0182007_10000191 Ga0182007_100001912 452
75 3300015265 Ga0182005_1005813 Ga0182005_10058132 452
76 3300048919 Ga0496116_0051815 Ga0496116_0051815_184_1707 452
77 3300048928 Ga0496125_0049703 Ga0496125_0049703_1085_2614 452
78 3300009036 Ga0105244_10015737 Ga0105244_100157373 453
79 3300048924 Ga0496121_0050539 Ga0496121_0050539_330_1856 453
80 3300048927 Ga0496124_0075017 Ga0496124_0075017_1048_2574 453
81 3300048928 Ga0496125_0027877 Ga0496125_0027877_1623_3149 453
82 3300005335 Ga0070666_10006175 Ga0070666_100061753 454
83 3300032004 Ga0307414_10018104 Ga0307414_100181042 454
84 3300005466 Ga0070685_10000308 Ga0070685_1000030828 455
85 3300009093 Ga0105240_10001717 Ga0105240_1000171722 455
86 3300025913 Ga0207695_10000033 Ga0207695_10000033180 455
87 3300025924 Ga0207694_10000487 Ga0207694_1000048716 455
88 3300041413 Ga0439465_0000408 Ga0439465_0000408_9513_11057 455
89 3300048921 Ga0496118_0016367 Ga0496118_0016367_444_1910 455
90 3300005353 Ga0070669_100022958 Ga0070669_1000229584 457
91 3300037471 Ga0395905_0117142 Ga0395905_0117142_587_2059 457
92 iso_pu_bacteria 2857442823 2857444650 457
93 3300005548 Ga0070665_100124333 Ga0070665_1001243332 458
94 3300048927 Ga0496124_0007400 Ga0496124_0007400_402_1925 459
95 3300003781 Ga0055536_1011920 Ga0055536_10119202 460
96 3300003791 Ga0055530_10013701 Ga0055530_100137012 460
97 3300003794 Ga0055531_10015927 Ga0055531_100159272 460
98 3300025292 Ga0209676_1000091 Ga0209676_100009117 460
99 3300025298 Ga0209050_1000206 Ga0209050_1000206130 460
100 3300025303 Ga0209051_1001280 Ga0209051_100128017 460
101 3300025304 Ga0209257_1000062 Ga0209257_1000062190 460
102 3300025304 Ga0209257_1000745 Ga0209257_100074551 460
103 3300049568 Ga0501031_0006041 Ga0501031_0006041_274_1800 462
104 3300049569 Ga0501032_0022442 Ga0501032_0022442_402_1928 462
105 3300049571 Ga0501034_0010186 Ga0501034_0010186_2761_4287 462
106 3300049572 Ga0501036_0011924 Ga0501036_0011924_792_2318 462
107 3300049573 Ga0501037_0002138 Ga0501037_0002138_404_1930 462
108 3300049574 Ga0501038_0007136 Ga0501038_0007136_514_2040 462
109 3300049581 Ga0501047_0032159 Ga0501047_0032159_3022_4548 462
110 3300049587 Ga0501071_0079854 Ga0501071_0079854_464_1990 462
111 3300049742 Ga0501080_0002950 Ga0501080_0002950_346_1872 462
112 3300049822 Ga0501035_0007542 Ga0501035_0007542_355_1881 462
113 3300049823 Ga0501044_0010361 Ga0501044_0010361_1311_2837 462
114 3300025292 Ga0209676_1000117 Ga0209676_100011716 463
115 3300009011 Ga0105251_10004227 Ga0105251_100042279 464
116 3300003771 Ga0055526_1001785 Ga0055526_10017853 465
117 3300003773 Ga0055537_1000306 Ga0055537_100030618 465
118 3300003784 Ga0055534_1000388 Ga0055534_100038818 465
119 3300003790 Ga0055528_1001434 Ga0055528_100143411 465
120 3300014497 Ga0182008_10019541 Ga0182008_100195413 465
121 3300025263 Ga0209565_1000023 Ga0209565_1000023328 465
122 3300025273 Ga0209673_1000866 Ga0209673_100086628 465
123 3300025291 Ga0209675_1000048 Ga0209675_100004826 465
124 3300025295 Ga0209564_1000106 Ga0209564_1000106127 465
125 3300029957 Ga0265324_10000010 Ga0265324_10000010134 465
126 3300031711 Ga0265314_10033500 Ga0265314_100335003 465
127 3300048919 Ga0496116_0034459 Ga0496116_0034459_462_1985 465
128 3300048920 Ga0496117_0008191 Ga0496117_0008191_445_1959 465
129 3300048921 Ga0496118_0001072 Ga0496118_0001072_40694_42208 465
130 3300048925 Ga0496122_0000560 Ga0496122_0000560_41251_42771 465
131 3300048926 Ga0496123_0004607 Ga0496123_0004607_1094_2614 465
132 3300048927 Ga0496124_0091697 Ga0496124_0091697_515_2038 465
133 3300048927 Ga0496124_0150856 Ga0496124_0150856_107_1642 465
134 3300003856 Ga0058692_1000011 Ga0058692_1000011132 466
135 3300025298 Ga0209050_1017608 Ga0209050_10176082 466
136 3300027312 Ga0209371_1000007 Ga0209371_1000007528 466
137 3300030500 Ga0268256_1000008 Ga0268256_1000008422 466
138 3300041404 Ga0439436_0010736 Ga0439436_0010736_661_2178 466
139 3300046558 Ga0495633_0009816 Ga0495633_0009816_511_2070 466
140 3300049580 Ga0501046_0000003 Ga0501046_0000003_200548_202107 466
141 3300003791 Ga0055530_10013515 Ga0055530_100135152 467
142 3300005347 Ga0070668_100043942 Ga0070668_1000439423 467
143 3300025298 Ga0209050_1000175 Ga0209050_10001753 467
144 3300044765 Ga0466970_0025875 Ga0466970_0025875_716_2287 467
145 3300003781 Ga0055536_1011905 Ga0055536_10119052 468
146 3300025284 Ga0209130_1017450 Ga0209130_10174501 468
147 3300025299 Ga0209256_1007787 Ga0209256_10077871 468
148 3300046810 Ga0495660_0050790 Ga0495660_0050790_401_1918 468
149 3300003794 Ga0055531_10004339 Ga0055531_100043392 469
150 3300006051 Ga0075364_10000037 Ga0075364_1000003722 469
151 3300025304 Ga0209257_1000320 Ga0209257_100032044 469
152 3300013102 Ga0157371_10042706 Ga0157371_100427063 470
153 3300015261 Ga0182006_1014793 Ga0182006_10147933 470
154 3300025972 Ga0207668_10012078 Ga0207668_100120784 470
155 3300026121 Ga0207683_10111398 Ga0207683_101113982 470
156 3300031911 Ga0307412_10039576 Ga0307412_100395762 470
157 3300032004 Ga0307414_10040298 Ga0307414_100402982 470
158 3300042007 Ga0439449_0000369 Ga0439449_0000369_660_2186 470
159 3300048919 Ga0496116_0034622 Ga0496116_0034622_1504_3042 470
160 3300048925 Ga0496122_0034128 Ga0496122_0034128_2096_3622 470
161 3300048928 Ga0496125_0064072 Ga0496125_0064072_300_1838 470
162 3300049571 Ga0501034_0000598 Ga0501034_0000598_55023_56537 470
163 3300048924 Ga0496121_0068730 Ga0496121_0068730_1092_2630 471
164 3300049571 Ga0501034_0032530 Ga0501034_0032530_1167_2684 471
165 3300003781 Ga0055536_1004392 Ga0055536_10043924 472
166 3300025292 Ga0209676_1000034 Ga0209676_1000034312 472
167 3300049705 Ga0501225_0017708 Ga0501225_0017708_66_1595 473
168 3300006051 Ga0075364_10034231 Ga0075364_100342313 474
169 3300009148 Ga0105243_10027110 Ga0105243_100271104 474
170 3300013100 Ga0157373_10077462 Ga0157373_100774621 474
171 3300025935 Ga0207709_10000841 Ga0207709_100008414 474
172 3300048920 Ga0496117_0033987 Ga0496117_0033987_2090_3613 474
173 3300048921 Ga0496118_0029245 Ga0496118_0029245_2867_4390 474
174 3300042007 Ga0439449_0014265 Ga0439449_0014265_166_1695 477
175 3300048921 Ga0496118_0089690 Ga0496118_0089690_279_1820 477
176 3300048928 Ga0496125_0035278 Ga0496125_0035278_2403_3923 477
177 3300041997 Ga0439431_0002243 Ga0439431_0002243_285_1892 479
178 3300042004 Ga0439445_0001846 Ga0439445_0001846_1888_3495 479
179 3300042007 Ga0439449_0025351 Ga0439449_0025351_626_2176 479
180 3300048927 Ga0496124_0000018 Ga0496124_0000018_155978_157597 481
181 iso_pu_bacteria 2818991457 2819660258 481
182 iso_pu_bacteria 2895498888 2895502566 481
183 iso_pu_bacteria 2895511927 2895514105 481
184 iso_pu_bacteria 2895522137 2895524417 481
185 iso_pu_bacteria 2895525241 2895526514 481
186 iso_pu_bacteria 2747842501 2748017255 482
187 iso_pu_bacteria 2852684882 2852684923 482
188 iso_pu_bacteria 2919130084 2919130465 482
189 iso_pu_bacteria 2929195423 2929198528 482
190 iso_pu_bacteria 2931380184 2931383816 482
191 iso_pu_bacteria 8021622325 8021624919 482
192 iso_pu_bacteria 8021626552 8021629685 482
193 iso_pu_bacteria 8021648035 8021651868 482
194 iso_pu_bacteria 2939589442 2939591278 483
195 iso_pu_bacteria 2974307012 2974308072 483
196 iso_pu_bacteria 2977247770 2977248804 483
197 iso_pu_bacteria 2984514374 2984516721 483
198 iso_pu_bacteria 2576861471 2578457450 484
199 iso_pu_bacteria 2842780639 2842781401 484
200 iso_pu_bacteria 2852649853 2852649875 484
201 iso_pu_bacteria 2939622612 2939625785 484
202 iso_pu_bacteria 2941475908 2941476780 484
203 iso_pu_bacteria 8002869464 8002872419 484
204 iso_pu_bacteria 2987605356 2987608309 486
205 iso_pu_bacteria 2643221579 2643908132 487
206 iso_pu_bacteria 2874220319 2874222721 487
207 iso_pu_bacteria 2919089067 2919093268 487
208 iso_pu_bacteria 2928496128 2928500010 487
209 iso_pu_bacteria 2937610967 2937613075 487
210 iso_pu_bacteria 2939626828 2939628156 487
211 iso_pu_bacteria 2961047084 2961049486 487
212 3300046558 Ga0495633_0009822 Ga0495633_0009822_557_2113 488
213 3300053161 Ga0500634_0000054 Ga0500634_0000054_29833_31389 488
214 iso_pu_bacteria 2747842428 2747950217 488
215 iso_pu_bacteria 2765235840 2765580034 488
216 iso_pu_bacteria 2816332141 2816518923 488
217 iso_pu_bacteria 2842391507 2842395265 488
218 iso_pu_bacteria 2919134579 2919138135 488
219 iso_pu_bacteria 2961064222 2961066385 488
220 3300048917 Ga0496114_0024461 Ga0496114_0024461_3003_4514 489
221 3300048929 Ga0496126_0132810 Ga0496126_0132810_495_2006 489
222 iso_pu_bacteria 2643221581 2643915665 489
223 iso_pu_bacteria 2923516293 2923518807 489
224 iso_pu_bacteria 2842757796 2842759464 490
225 3300009993 Ga0105028_100971 Ga0105028_1009713 491
226 3300005289 Ga0065704_10111165 Ga0065704_101111651 494
227 2162886007 SwRhRL2b_contig_341226 SwRhRL2b_0580.00006370 497

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13180

PDZ_2

PDZ domain

316

407

0.95

PF13365

Trypsin_2

Trypsin-like peptidase domain

142

277

0.95

PF17820

PDZ_6

PDZ domain

342

396

0.89

PF00595

PDZ

PDZ domain

306

395

0.88

PF00089

Trypsin

Trypsin

120

303

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
8auk-assembly1.cif.gz_E cryo-em structure of human birc6 in complex with htra2. 0.9279 57 273
7vge-assembly1.cif.gz_B structure of the pdz deleted variant of htra2 protease (s306a) 0.9264 57 273
7vge-assembly2.cif.gz_E structure of the pdz deleted variant of htra2 protease (s306a) 0.9186 57 273
3sti-assembly1.cif.gz_B crystal structure of the protease domain of degq from escherichia coli 0.9167 53 286
3nwu-assembly1.cif.gz_B substrate induced remodeling of the active site regulates htra1 activity 0.9113 57 273
ID Description Score Start End Superfamily
af_P0C0V0_287_387_2.30.42.10 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9443 290 389 2.30.42.10
2z9iA03 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9359 289 385 2.30.42.10
3pv2B02 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9302 286 385 2.30.42.10
3pv2B01 Mainly Beta;Beta Barrel;Thrombin, subunit H; 0.93 55 284 2.40.10.120
3gdvC03 Mainly Beta;Roll;Pdz3 Domain;PDZ domain 0.9267 290 388 2.30.42.10
ID Description Score Start End GO Terms
AF-A0A2P6W8M2-F1-model_v4 Trypsin 0.9782 57 218 GO:0004252
GO:0006508
AF-A0A1V5E998-F1-model_v4 Putative periplasmic serine endoprotease DegP-like (EC 3.4.21.107) 0.9687 289 387 GO:0004197
GO:0006508
GO:0030313
GO:0042597
AF-A0A531LWR1-F1-model_v4 PDZ domain-containing protein 0.953 286 386
AF-A0A519BU81-F1-model_v4 Trypsin 0.945 56 284 GO:0004252
GO:0006508
AF-A0A6L6CTJ0-F1-model_v4 PDZ domain-containing protein 0.9434 290 387

Feature Viewer

pLDDT pTM Quality
77.78 0.69 Medium
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Predicted Structure (AlphaFold2)

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