F339694

General Info

Members Datasets Scaffolds Average Seq Length
227 156 214 350

Family's Representative Sequence

Representative Sequence 3300005468|Ga0070707_100101040|Ga0070707_1001010402
Length 403
Sequence VPGKGRDDWPEWLKLFGIWARKGPAAVVALSGKRGRGGGTLSGDSGDKRMRVDSALLTARWSALSSCPEAVVWLRVQAELGLASRTIEAYARGLADYLAVCQRDGHDPLTAGRAEIARYVRDLAERPNHRGPNVVALDSGVGLANATLQQRLVAVRLFYDHLIEEGRRETNPVGRGRYTPGHAFGGQRERGLVPRFTKLPWIPSDDQWRQILEAASVEPLRNRLMLALAYDAGLRREELCLLRSDDLDPAHRMLRVRAETTKNRRERVVPYSTTSGVLLRHYLEERRLLSAMRGPLFLSASRRNRAQPVSLWTWSKVVRKIALRADVPRFSTHALRHLCLTDLARAGWELHAIATFAGHRSLASTLQYIHLSGRDLAAKLERSMAEVHAWRMAQIGQNLGDPS

Samples

Sample ID Description Type Environment
1 2513237083 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
2 2599185240 Burkholderia sp. NFPP32 Isolate Rhizoplane
3 2599185355 Burkholderia sp. NFACC33-1 Isolate Rhizoplane
4 2675903129 Burkholderia pyrrocinia NFIX32 Isolate Rhizoplane
5 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
6 2867475112 Streptomyces sp. TM32 Isolate Unclassified
7 2885270888 Paraburkholderia sp. UYCPa14C Isolate Unclassified
8 2900634093 Paraburkholderia dipogonis ICMP 19430 Isolate Unclassified
9 2904615490 Paraburkholderia franconis CNPSo 3157 Isolate Unclassified
10 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
11 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
15 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
31 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
32 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
62 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
63 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
64 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
65 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
66 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
67 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
87 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
92 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
93 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
94 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
95 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
96 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
97 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
98 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
99 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
100 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
101 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
102 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
103 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
104 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
105 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
106 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
107 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
108 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
109 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
110 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
111 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
112 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
113 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
114 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
115 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
116 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
117 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
118 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
119 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
120 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
121 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
122 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
123 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
124 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
125 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
126 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
127 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
128 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
129 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
130 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
131 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
132 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
133 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
134 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
135 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
136 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
137 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
138 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
139 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
141 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
142 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
143 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
144 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
145 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
146 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
147 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
148 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
149 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
150 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
151 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
152 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
153 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
154 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
155 8003955200 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
156 8055301274 Paraburkholderia kirstenboschensis LMG 28727 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 94.27
Metatranscriptomes 0
Isolates 5.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.32
Nodule 1.32
Rhizoplane 2.64
Rhizosphere 87.67
Stem 0
Stem Tuber 0
Unclassified 7.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJNas_1000178 3300000546 Bacteria 10608
2 Ga0070683_100085529 3300005329 Bacteria 2956
3 Ga0068868_100168663 3300005338 Bacteria 1811
4 Ga0070659_100070000 3300005366 Bacteria 2786
5 Ga0070710_10092408 3300005437 Bacteria 1787
6 Ga0070711_100244809 3300005439 Bacteria 1404
7 Ga0070708_100020635 3300005445 Bacteria 5560
8 Ga0070708_100077854 3300005445 Bacteria 2997
9 Ga0070678_100040440 3300005456 Bacteria 3299
10 Ga0070662_100051495 3300005457 Bacteria 2974
11 Ga0070681_10011731 3300005458 Bacteria 8682
12 Ga0070706_100003477 3300005467 Bacteria 15495
13 Ga0070706_100005016 3300005467 Bacteria 12656
14 Ga0070706_100008123 3300005467 Bacteria 9789
15 Ga0070706_100014769 3300005467 Bacteria 7216
16 Ga0070706_100025792 3300005467 Bacteria 5409
17 Ga0070706_100041968 3300005467 Bacteria 4225
18 Ga0070706_100048862 3300005467 Bacteria 3904
19 Ga0070706_100099210 3300005467 Bacteria 2706
20 Ga0070706_100144367 3300005467 Bacteria 2222
21 Ga0070707_100023878 3300005468 Bacteria 5784
22 Ga0070707_100040585 3300005468 Bacteria 4453
23 Ga0070707_100046545 3300005468 Bacteria 4151
24 Ga0070707_100101040 3300005468 Bacteria 2794
25 Ga0070698_100011680 3300005471 Bacteria 9315
26 Ga0070698_100026466 3300005471 Bacteria 6039
27 Ga0070698_100028247 3300005471 Bacteria 5828
28 Ga0070698_100030885 3300005471 Bacteria 5555
29 Ga0070698_100045925 3300005471 Bacteria 4468
30 Ga0070698_100055175 3300005471 Bacteria 4031
31 Ga0070698_100060677 3300005471 Bacteria 3816
32 Ga0070698_100079432 3300005471 Bacteria 3277
33 Ga0070698_100271810 3300005471 Bacteria 1626
34 Ga0070699_100000019 3300005518 Bacteria 185937
35 Ga0070699_100011050 3300005518 Bacteria 7807
36 Ga0070699_100072491 3300005518 Bacteria 2996
37 Ga0070699_100078063 3300005518 Bacteria 2883
38 Ga0070699_100101013 3300005518 Bacteria 2528
39 Ga0070697_100003049 3300005536 Bacteria 12855
40 Ga0070697_100019345 3300005536 Bacteria 5377
41 Ga0070697_100094351 3300005536 Bacteria 2479
42 Ga0068853_100063682 3300005539 Bacteria 3194
43 Ga0070686_100243877 3300005544 Bacteria 1310
44 Ga0070695_100179607 3300005545 Bacteria 1499
45 Ga0070695_100232136 3300005545 Bacteria 1334
46 Ga0070696_100091442 3300005546 Bacteria 2167
47 Ga0070665_100141242 3300005548 Bacteria 2411
48 Ga0068855_100009624 3300005563 Bacteria 11658
49 Ga0070664_100225647 3300005564 Bacteria 1677
50 Ga0068854_100121699 3300005578 Bacteria 1982
51 Ga0068856_100008115 3300005614 Bacteria 10249
52 Ga0068856_100473417 3300005614 Bacteria 1273
53 Ga0068866_10013915 3300005718 Bacteria 3540
54 Ga0068860_100218454 3300005843 Bacteria 1851
55 Ga0068862_100217544 3300005844 Bacteria 1728
56 Ga0081455_10006407 3300005937 Bacteria 12623
57 Ga0081539_10009981 3300005985 Bacteria 7824
58 Ga0070717_10007048 3300006028 Bacteria 8324
59 Ga0070717_10010975 3300006028 Bacteria 6859
60 Ga0070717_10016340 3300006028 Bacteria 5753
61 Ga0070717_10041677 3300006028 Bacteria 3743
62 Ga0070717_10054902 3300006028 Bacteria 3286
63 Ga0097621_100011632 3300006237 Bacteria 6489
64 Ga0068871_100011534 3300006358 Bacteria 6482
65 Ga0075428_100181312 3300006844 Bacteria 2279
66 Ga0075430_100052394 3300006846 Bacteria 3437
67 Ga0075431_100065261 3300006847 Bacteria 3759
68 Ga0075431_100267484 3300006847 Unclassified 1733
69 Ga0075431_100307916 3300006847 Unclassified 1599
70 Ga0075431_100367011 3300006847 Bacteria 1445
71 Ga0068865_100029166 3300006881 Bacteria 3658
72 Ga0105245_10218702 3300009098 Bacteria 1837
73 Ga0105245_10281678 3300009098 Bacteria 1625
74 Ga0105247_10057763 3300009101 Bacteria 2399
75 Ga0114129_10044185 3300009147 Bacteria 6268
76 Ga0114129_10068877 3300009147 Bacteria 4932
77 Ga0114129_10370163 3300009147 Bacteria 1894
78 Ga0114129_10373377 3300009147 Bacteria 1884
79 Ga0105241_10112436 3300009174 Bacteria 2182
80 Ga0105238_10008709 3300009551 Bacteria 10150
81 Ga0105249_10403803 3300009553 Bacteria 1397
82 Ga0105239_10276395 3300010375 Bacteria 1890
83 Ga0157369_10042455 3300013105 Bacteria 4961
84 Ga0157374_10001403 3300013296 Bacteria 20425
85 Ga0157374_10023778 3300013296 Bacteria 5486
86 Ga0157378_10033870 3300013297 Bacteria 4518
87 Ga0157378_10053057 3300013297 Bacteria 3609
88 Ga0163162_10250666 3300013306 Bacteria 1902
89 Ga0157372_10024568 3300013307 Bacteria 6548
90 Ga0157375_10215013 3300013308 Bacteria 2080
91 Ga0163163_10023857 3300014325 Bacteria 5814
92 Ga0157380_10132188 3300014326 Bacteria 2131
93 Ga0157376_10427216 3300014969 Bacteria 1287
94 Ga0163161_10167692 3300017792 Bacteria 1678
95 Ga0213873_10006367 3300021358 Bacteria 2319
96 Ga0213874_10045887 3300021377 Bacteria 1324
97 Ga0213876_10039470 3300021384 Unclassified 2494
98 Ga0213875_10011516 3300021388 Bacteria 4398
99 Ga0207642_10054901 3300025899 Bacteria 1819
100 Ga0207710_10075864 3300025900 Bacteria 1550
101 Ga0207684_10004062 3300025910 Bacteria 13973
102 Ga0207684_10013091 3300025910 Bacteria 7180
103 Ga0207684_10015230 3300025910 Bacteria 6623
104 Ga0207684_10033046 3300025910 Bacteria 4400
105 Ga0207684_10041559 3300025910 Plasmid 3897
106 Ga0207684_10055902 3300025910 Bacteria 3348
107 Ga0207684_10070846 3300025910 Bacteria 2962
108 Ga0207684_10151233 3300025910 Bacteria 1997
109 Ga0207695_10019539 3300025913 Bacteria 7795
110 Ga0207663_10122253 3300025916 Bacteria 1785
111 Ga0207646_10002541 3300025922 Bacteria 21533
112 Ga0207646_10010520 3300025922 Bacteria 9029
113 Ga0207646_10017818 3300025922 Bacteria 6634
114 Ga0207646_10020842 3300025922 Bacteria 6067
115 Ga0207646_10033841 3300025922 Bacteria 4619
116 Ga0207690_10187051 3300025932 Bacteria 1563
117 Ga0207706_10070757 3300025933 Bacteria 3068
118 Ga0207669_10018080 3300025937 Bacteria 3633
119 Ga0207667_10000983 3300025949 Bacteria 36450
120 Ga0207640_10285040 3300025981 Bacteria 1299
121 Ga0207703_10161518 3300026035 Bacteria 1963
122 Ga0207639_10114554 3300026041 Bacteria 2203
123 Ga0207702_10002381 3300026078 Bacteria 17950
124 Ga0207674_10149349 3300026116 Bacteria 2294
125 Ga0207675_100455541 3300026118 Bacteria 1268
126 Ga0207683_10027971 3300026121 Bacteria 4873
127 Ga0268266_10110062 3300028379 Bacteria 2440
128 Ga0268264_10056563 3300028381 Bacteria 3279
129 Ga0373936_0004606 3300035113 Bacteria 5217
130 Ga0373947_0024025 3300035725 Bacteria 3549
131 Ga0373925_0037145 3300037068 Bacteria 3595
132 Ga0436364_0556984 3300037853 Bacteria 3990
133 Ga0436365_0978874 3300039437 Bacteria 4735
134 Ga0436365_1642956 3300039437 Bacteria 1216
135 Ga0436360_0013385 3300039438 Bacteria 4434
136 Ga0436363_0238471 3300039450 Bacteria 3997
137 Ga0436362_0113374 3300039453 Bacteria 3009
138 Ga0436362_0439408 3300039453 Bacteria 5384
139 Ga0436362_0699022 3300039453 Bacteria 2902
140 Ga0436362_0843175 3300039453 Bacteria 2629
141 Ga0439458_0034216 3300042157 Unclassified 1219
142 Ga0466977_0000042 3300044666 Bacteria 21695
143 Ga0466957_0148723 3300044842 Bacteria 1513
144 Ga0495617_069143 3300046452 Bacteria 1162
145 Ga0495629_0174074 3300046459 Bacteria 1493
146 Ga0495651_0001166 3300046462 Bacteria 20292
147 Ga0495650_0027755 3300046471 Bacteria 2610
148 Ga0495664_0021138 3300046477 Bacteria 3759
149 Ga0495596_0040487 3300046500 Bacteria 1840
150 Ga0495596_0054887 3300046500 Bacteria 1557
151 Ga0495596_0059852 3300046500 Bacteria 1484
152 Ga0495608_0130290 3300046511 Bacteria 1610
153 Ga0495616_0097886 3300046513 Bacteria 1379
154 Ga0495620_0055304 3300046515 Bacteria 1673
155 Ga0495628_0045424 3300046516 Bacteria 3493
156 Ga0495644_0011357 3300046523 Bacteria 3430
157 Ga0495663_0004715 3300046525 Bacteria 3815
158 Ga0495652_0181195 3300046529 Bacteria 1616
159 Ga0495586_0094045 3300046535 Bacteria 1658
160 Ga0495587_0078920 3300046536 Bacteria 1909
161 Ga0495621_0023580 3300046539 Bacteria 2048
162 Ga0495645_0080308 3300046543 Bacteria 2341
163 Ga0495667_0026598 3300046559 Bacteria 3899
164 Ga0495668_0017212 3300046616 Bacteria 4197
165 Ga0495668_0048612 3300046616 Bacteria 2353
166 Ga0495657_0043522 3300046675 Bacteria 3061
167 Ga0495599_0062047 3300046678 Bacteria 2335
168 Ga0495646_0041076 3300046680 Bacteria 2844
169 Ga0495658_0003527 3300046683 Bacteria 7742
170 Ga0495613_0170194 3300046689 Bacteria 1546
171 Ga0495589_0110356 3300046794 Bacteria 1328
172 Ga0495660_0052656 3300046810 Bacteria 2211
173 Ga0495581_0103680 3300047315 Bacteria 1653
174 Ga0495604_0040983 3300047317 Bacteria 3633
175 Ga0495604_0121241 3300047317 Bacteria 1893
176 Ga0495674_0022907 3300047319 Bacteria 5755
177 Ga0495674_0131571 3300047319 Bacteria 2108
178 Ga0495676_0031216 3300047321 Bacteria 4509
179 Ga0495687_001820 3300047443 Bacteria 18738
180 Ga0495675_0002526 3300047444 Bacteria 10961
181 Ga0495677_0082017 3300047445 Bacteria 1209
182 Ga0495679_017705 3300047446 Bacteria 2545
183 Ga0495684_0001158 3300047471 Bacteria 21192
184 Ga0495602_0000329 3300048088 Bacteria 43833
185 Ga0495602_0221981 3300048088 Bacteria 1426
186 Ga0495614_0047424 3300048089 Bacteria 1843
187 Ga0495615_0039325 3300048090 Bacteria 1173
188 Ga0496103_0064888 3300048906 Bacteria 2277
189 Ga0496104_0473992 3300048907 Bacteria 1163
190 Ga0496112_0017024 3300048915 Bacteria 6824
191 Ga0496126_0001843 3300048929 Bacteria 30918
192 Ga0501040_0006267 3300049576 Bacteria 7723
193 Ga0501076_0096565 3300049592 Unclassified 2381
194 Ga0501076_0231340 3300049592 Unclassified 1511
195 Ga0501079_0324531 3300049741 Bacteria 1205
196 Ga0501081_0024911 3300049743 Bacteria 4022
197 Ga0501035_0123040 3300049822 Bacteria 2266
198 nmdc:mga05p37_45468_c1 3300050507 Bacteria 5400
199 nmdc:mga05p37_616230_c1 3300050507 Bacteria 1222
200 nmdc:mga05p37_9976_c1 3300050507 Bacteria 11279
201 nmdc:mga09592_12685_c1 3300050508 Bacteria 6869
202 nmdc:mga09592_18349_c1 3300050508 Bacteria 5738
203 nmdc:mga0qj67_5985_c1 3300050509 Bacteria 8912
204 nmdc:mga06r32_14477_c1 3300050510 Bacteria 7159
205 nmdc:mga06r32_312551_c1 3300050510 Unclassified 1557
206 nmdc:mga06r32_6402_c1 3300050510 Bacteria 10579
207 Ga0495601_0001931 3300053077 Bacteria 11600
208 Ga0495612_0005050 3300053078 Bacteria 5464
209 Ga0495619_0003558 3300053085 Bacteria 10050
210 Ga0500553_007235 3300053101 Bacteria 5501
211 Ga0500614_004179 3300053123 Bacteria 3065
212 Ga0500603_044695 3300053150 Bacteria 1193
213 Ga0530510_0027503 3300061734 Bacteria 4074
214 Ga0530510_0077473 3300061734 Unclassified 2416

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013296 Ga0157374_10023778 Ga0157374_100237784 284
2 3300025910 Ga0207684_10015230 Ga0207684_100152304 302
3 3300005467 Ga0070706_100025792 Ga0070706_1000257924 303
4 3300006028 Ga0070717_10016340 Ga0070717_100163403 303
5 iso_pu_bacteria 2900634093 2900642774 308
6 iso_pu_bacteria 2900634093 2900642805 308
7 3300044666 Ga0466977_0000042 Ga0466977_0000042_891_1865 324
8 3300046471 Ga0495650_0027755 Ga0495650_0027755_433_1407 324
9 3300046477 Ga0495664_0021138 Ga0495664_0021138_407_1381 324
10 3300046500 Ga0495596_0054887 Ga0495596_0054887_225_1199 324
11 3300046516 Ga0495628_0045424 Ga0495628_0045424_68_1042 324
12 3300046529 Ga0495652_0181195 Ga0495652_0181195_352_1326 324
13 3300046543 Ga0495645_0080308 Ga0495645_0080308_433_1407 324
14 3300046678 Ga0495599_0062047 Ga0495599_0062047_560_1534 324
15 3300046680 Ga0495646_0041076 Ga0495646_0041076_1470_2444 324
16 3300047319 Ga0495674_0131571 Ga0495674_0131571_734_1708 324
17 3300047443 Ga0495687_001820 Ga0495687_001820_1475_2449 324
18 3300048088 Ga0495602_0221981 Ga0495602_0221981_46_1020 324
19 3300005329 Ga0070683_100085529 Ga0070683_1000855293 325
20 3300005458 Ga0070681_10011731 Ga0070681_100117315 325
21 3300005539 Ga0068853_100063682 Ga0068853_1000636822 325
22 3300005563 Ga0068855_100009624 Ga0068855_1000096248 325
23 3300005564 Ga0070664_100225647 Ga0070664_1002256472 325
24 3300005614 Ga0068856_100008115 Ga0068856_1000081155 325
25 3300006237 Ga0097621_100011632 Ga0097621_1000116324 325
26 3300006358 Ga0068871_100011534 Ga0068871_1000115343 325
27 3300009174 Ga0105241_10112436 Ga0105241_101124361 325
28 3300009551 Ga0105238_10008709 Ga0105238_100087097 325
29 3300013105 Ga0157369_10042455 Ga0157369_100424553 325
30 3300013296 Ga0157374_10001403 Ga0157374_1000140319 325
31 3300013297 Ga0157378_10033870 Ga0157378_100338706 325
32 3300013307 Ga0157372_10024568 Ga0157372_100245683 325
33 3300014969 Ga0157376_10427216 Ga0157376_104272161 325
34 3300025913 Ga0207695_10019539 Ga0207695_100195394 325
35 3300025949 Ga0207667_10000983 Ga0207667_100009831 325
36 3300026041 Ga0207639_10114554 Ga0207639_101145542 325
37 3300026078 Ga0207702_10002381 Ga0207702_1000238120 325
38 3300026116 Ga0207674_10149349 Ga0207674_101493494 325
39 3300048915 Ga0496112_0017024 Ga0496112_0017024_5739_6734 325
40 3300005439 Ga0070711_100244809 Ga0070711_1002448092 326
41 3300005985 Ga0081539_10009981 Ga0081539_100099812 326
42 3300025916 Ga0207663_10122253 Ga0207663_101222532 326
43 3300035113 Ga0373936_0004606 Ga0373936_0004606_1159_2142 327
44 3300048929 Ga0496126_0001843 Ga0496126_0001843_18668_19651 327
45 3300050507 nmdc:mga05p37_45468_c1 nmdc:mga05p37_45468_c1_98_1081 327
46 3300050508 nmdc:mga09592_18349_c1 nmdc:mga09592_18349_c1_3181_4164 327
47 3300050509 nmdc:mga0qj67_5985_c1 nmdc:mga0qj67_5985_c1_3759_4742 327
48 3300050510 nmdc:mga06r32_6402_c1 nmdc:mga06r32_6402_c1_5030_6013 327
49 3300014325 Ga0163163_10023857 Ga0163163_100238572 329
50 3300039437 Ga0436365_1642956 Ga0436365_1642956_24_1013 329
51 3300009147 Ga0114129_10044185 Ga0114129_100441853 330
52 3300050507 nmdc:mga05p37_9976_c1 nmdc:mga05p37_9976_c1_5034_6026 330
53 3300050508 nmdc:mga09592_12685_c1 nmdc:mga09592_12685_c1_602_1594 330
54 3300005545 Ga0070695_100232136 Ga0070695_1002321361 331
55 3300021358 Ga0213873_10006367 Ga0213873_100063674 333
56 3300039453 Ga0436362_0439408 Ga0436362_0439408_2386_3393 333
57 3300049741 Ga0501079_0324531 Ga0501079_0324531_187_1188 333
58 3300046675 Ga0495657_0043522 Ga0495657_0043522_1962_2999 334
59 3300047317 Ga0495604_0040983 Ga0495604_0040983_2181_3218 334
60 iso_pu_bacteria 2867475112 2867477718 338
61 3300005467 Ga0070706_100099210 Ga0070706_1000992102 345
62 3300005518 Ga0070699_100000019 Ga0070699_10000001928 345
63 3300025910 Ga0207684_10055902 Ga0207684_100559023 345
64 3300009098 Ga0105245_10281678 Ga0105245_102816781 346
65 3300005468 Ga0070707_100046545 Ga0070707_1000465452 347
66 3300039453 Ga0436362_0113374 Ga0436362_0113374_1545_2645 347
67 3300049822 Ga0501035_0123040 Ga0501035_0123040_166_1218 347
68 3300005468 Ga0070707_100023878 Ga0070707_1000238782 348
69 3300005468 Ga0070707_100040585 Ga0070707_1000405853 348
70 3300005471 Ga0070698_100026466 Ga0070698_1000264662 348
71 3300005471 Ga0070698_100060677 Ga0070698_1000606771 348
72 3300005471 Ga0070698_100079432 Ga0070698_1000794322 348
73 3300005518 Ga0070699_100072491 Ga0070699_1000724911 348
74 3300005536 Ga0070697_100003049 Ga0070697_1000030495 348
75 3300006028 Ga0070717_10007048 Ga0070717_100070488 348
76 3300006844 Ga0075428_100181312 Ga0075428_1001813124 348
77 3300006846 Ga0075430_100052394 Ga0075430_1000523941 348
78 3300006847 Ga0075431_100065261 Ga0075431_1000652612 348
79 3300006847 Ga0075431_100307916 Ga0075431_1003079162 348
80 3300006847 Ga0075431_100367011 Ga0075431_1003670112 348
81 3300009147 Ga0114129_10068877 Ga0114129_100688773 348
82 3300025922 Ga0207646_10010520 Ga0207646_100105206 348
83 3300025922 Ga0207646_10033841 Ga0207646_100338413 348
84 3300046500 Ga0495596_0059852 Ga0495596_0059852_349_1395 348
85 3300046513 Ga0495616_0097886 Ga0495616_0097886_35_1081 348
86 3300046525 Ga0495663_0004715 Ga0495663_0004715_2612_3658 348
87 3300046616 Ga0495668_0048612 Ga0495668_0048612_283_1329 348
88 3300047445 Ga0495677_0082017 Ga0495677_0082017_50_1096 348
89 3300050510 nmdc:mga06r32_14477_c1 nmdc:mga06r32_14477_c1_2226_3272 348
90 3300050510 nmdc:mga06r32_312551_c1 nmdc:mga06r32_312551_c1_17_1063 348
91 3300053077 Ga0495601_0001931 Ga0495601_0001931_10130_11194 348
92 3300053078 Ga0495612_0005050 Ga0495612_0005050_2701_3765 348
93 3300053085 Ga0495619_0003558 Ga0495619_0003558_8824_9888 348
94 3300005445 Ga0070708_100077854 Ga0070708_1000778542 349
95 3300005467 Ga0070706_100041968 Ga0070706_1000419682 349
96 3300005468 Ga0070707_100101040 Ga0070707_1001010402 349
97 3300005471 Ga0070698_100030885 Ga0070698_1000308852 349
98 3300005518 Ga0070699_100101013 Ga0070699_1001010132 349
99 3300005536 Ga0070697_100094351 Ga0070697_1000943512 349
100 3300006028 Ga0070717_10041677 Ga0070717_100416772 349
101 3300021384 Ga0213876_10039470 Ga0213876_100394702 349
102 3300025910 Ga0207684_10041559 Ga0207684_100415593 349
103 3300037853 Ga0436364_0556984 Ga0436364_0556984_89_1147 349
104 3300039437 Ga0436365_0978874 Ga0436365_0978874_2354_3403 349
105 3300046462 Ga0495651_0001166 Ga0495651_0001166_18384_19433 349
106 3300046511 Ga0495608_0130290 Ga0495608_0130290_300_1349 349
107 3300046536 Ga0495587_0078920 Ga0495587_0078920_358_1407 349
108 3300046559 Ga0495667_0026598 Ga0495667_0026598_1018_2067 349
109 3300047317 Ga0495604_0121241 Ga0495604_0121241_593_1642 349
110 3300047444 Ga0495675_0002526 Ga0495675_0002526_7210_8259 349
111 3300047471 Ga0495684_0001158 Ga0495684_0001158_15958_17007 349
112 3300048088 Ga0495602_0000329 Ga0495602_0000329_11153_12202 349
113 iso_pu_bacteria 8055301274 8055307643 349
114 3300005467 Ga0070706_100005016 Ga0070706_10000501613 350
115 3300005471 Ga0070698_100011680 Ga0070698_1000116809 350
116 3300005937 Ga0081455_10006407 Ga0081455_100064077 350
117 3300006028 Ga0070717_10010975 Ga0070717_100109752 350
118 3300025910 Ga0207684_10033046 Ga0207684_100330462 350
119 3300025922 Ga0207646_10002541 Ga0207646_1000254112 350
120 3300044842 Ga0466957_0148723 Ga0466957_0148723_223_1332 350
121 3300046459 Ga0495629_0174074 Ga0495629_0174074_391_1446 350
122 3300046535 Ga0495586_0094045 Ga0495586_0094045_37_1179 350
123 3300046683 Ga0495658_0003527 Ga0495658_0003527_146_1201 350
124 3300046689 Ga0495613_0170194 Ga0495613_0170194_49_1104 350
125 3300047315 Ga0495581_0103680 Ga0495581_0103680_557_1612 350
126 3300047319 Ga0495674_0022907 Ga0495674_0022907_2322_3392 350
127 3300047321 Ga0495676_0031216 Ga0495676_0031216_2769_3824 350
128 3300047446 Ga0495679_017705 Ga0495679_017705_1311_2381 350
129 3300048089 Ga0495614_0047424 Ga0495614_0047424_515_1585 350
130 3300053101 Ga0500553_007235 Ga0500553_007235_2468_3523 350
131 3300053123 Ga0500614_004179 Ga0500614_004179_1876_2931 350
132 3300053150 Ga0500603_044695 Ga0500603_044695_98_1153 350
133 iso_pu_bacteria 2599185240 2599749428 350
134 iso_pu_bacteria 2599185355 2600211554 350
135 iso_pu_bacteria 2675903129 2676747632 350
136 iso_pu_bacteria 2791355137 2792840724 350
137 iso_pu_bacteria 2885270888 2885276547 350
138 iso_pu_bacteria 2904615490 2904616114 350
139 iso_pu_bacteria 2904615490 2904618359 350
140 3300005471 Ga0070698_100055175 Ga0070698_1000551751 351
141 3300005471 Ga0070698_100271810 Ga0070698_1002718102 351
142 3300005544 Ga0070686_100243877 Ga0070686_1002438771 351
143 3300005548 Ga0070665_100141242 Ga0070665_1001412421 351
144 3300005614 Ga0068856_100473417 Ga0068856_1004734171 351
145 3300010375 Ga0105239_10276395 Ga0105239_102763952 351
146 3300025922 Ga0207646_10017818 Ga0207646_100178185 351
147 3300028379 Ga0268266_10110062 Ga0268266_101100622 351
148 3300035725 Ga0373947_0024025 Ga0373947_0024025_36_1103 351
149 3300037068 Ga0373925_0037145 Ga0373925_0037145_2396_3463 351
150 3300039438 Ga0436360_0013385 Ga0436360_0013385_652_1716 351
151 3300039453 Ga0436362_0699022 Ga0436362_0699022_610_1677 351
152 3300039453 Ga0436362_0843175 Ga0436362_0843175_1406_2515 351
153 3300046452 Ga0495617_069143 Ga0495617_069143_78_1145 351
154 3300046500 Ga0495596_0040487 Ga0495596_0040487_403_1470 351
155 3300046515 Ga0495620_0055304 Ga0495620_0055304_149_1216 351
156 3300046523 Ga0495644_0011357 Ga0495644_0011357_33_1100 351
157 3300046539 Ga0495621_0023580 Ga0495621_0023580_897_1964 351
158 3300046616 Ga0495668_0017212 Ga0495668_0017212_784_1851 351
159 3300046794 Ga0495589_0110356 Ga0495589_0110356_199_1266 351
160 3300046810 Ga0495660_0052656 Ga0495660_0052656_114_1181 351
161 3300048090 Ga0495615_0039325 Ga0495615_0039325_96_1163 351
162 3300049576 Ga0501040_0006267 Ga0501040_0006267_5259_6350 351
163 3300049592 Ga0501076_0096565 Ga0501076_0096565_74_1165 351
164 3300049592 Ga0501076_0231340 Ga0501076_0231340_83_1174 351
165 3300049743 Ga0501081_0024911 Ga0501081_0024911_2793_3884 351
166 3300061734 Ga0530510_0027503 Ga0530510_0027503_2332_3423 351
167 3300061734 Ga0530510_0077473 Ga0530510_0077473_178_1269 351
168 3300005338 Ga0068868_100168663 Ga0068868_1001686632 352
169 3300005366 Ga0070659_100070000 Ga0070659_1000700002 352
170 3300005437 Ga0070710_10092408 Ga0070710_100924081 352
171 3300005445 Ga0070708_100020635 Ga0070708_1000206352 352
172 3300005456 Ga0070678_100040440 Ga0070678_1000404402 352
173 3300005457 Ga0070662_100051495 Ga0070662_1000514951 352
174 3300005467 Ga0070706_100003477 Ga0070706_10000347710 352
175 3300005467 Ga0070706_100008123 Ga0070706_1000081237 352
176 3300005467 Ga0070706_100014769 Ga0070706_1000147696 352
177 3300005467 Ga0070706_100144367 Ga0070706_1001443672 352
178 3300005471 Ga0070698_100028247 Ga0070698_1000282473 352
179 3300005518 Ga0070699_100011050 Ga0070699_1000110503 352
180 3300005518 Ga0070699_100078063 Ga0070699_1000780632 352
181 3300005536 Ga0070697_100019345 Ga0070697_1000193453 352
182 3300005545 Ga0070695_100179607 Ga0070695_1001796071 352
183 3300005546 Ga0070696_100091442 Ga0070696_1000914422 352
184 3300005578 Ga0068854_100121699 Ga0068854_1001216992 352
185 3300005718 Ga0068866_10013915 Ga0068866_100139152 352
186 3300005843 Ga0068860_100218454 Ga0068860_1002184542 352
187 3300006028 Ga0070717_10054902 Ga0070717_100549022 352
188 3300006847 Ga0075431_100267484 Ga0075431_1002674842 352
189 3300006881 Ga0068865_100029166 Ga0068865_1000291661 352
190 3300009101 Ga0105247_10057763 Ga0105247_100577632 352
191 3300009147 Ga0114129_10370163 Ga0114129_103701632 352
192 3300009147 Ga0114129_10373377 Ga0114129_103733772 352
193 3300009553 Ga0105249_10403803 Ga0105249_104038031 352
194 3300013297 Ga0157378_10053057 Ga0157378_100530572 352
195 3300013306 Ga0163162_10250666 Ga0163162_102506663 352
196 3300013308 Ga0157375_10215013 Ga0157375_102150132 352
197 3300014326 Ga0157380_10132188 Ga0157380_101321882 352
198 3300017792 Ga0163161_10167692 Ga0163161_101676921 352
199 3300021377 Ga0213874_10045887 Ga0213874_100458871 352
200 3300021388 Ga0213875_10011516 Ga0213875_100115164 352
201 3300025899 Ga0207642_10054901 Ga0207642_100549012 352
202 3300025900 Ga0207710_10075864 Ga0207710_100758642 352
203 3300025910 Ga0207684_10004062 Ga0207684_100040621 352
204 3300025910 Ga0207684_10013091 Ga0207684_100130915 352
205 3300025910 Ga0207684_10151233 Ga0207684_101512331 352
206 3300025922 Ga0207646_10020842 Ga0207646_100208424 352
207 3300025932 Ga0207690_10187051 Ga0207690_101870511 352
208 3300025933 Ga0207706_10070757 Ga0207706_100707572 352
209 3300025937 Ga0207669_10018080 Ga0207669_100180802 352
210 3300025981 Ga0207640_10285040 Ga0207640_102850401 352
211 3300026035 Ga0207703_10161518 Ga0207703_101615182 352
212 3300026118 Ga0207675_100455541 Ga0207675_1004555411 352
213 3300026121 Ga0207683_10027971 Ga0207683_100279713 352
214 3300028381 Ga0268264_10056563 Ga0268264_100565631 352
215 3300039450 Ga0436363_0238471 Ga0436363_0238471_320_1438 352
216 3300048906 Ga0496103_0064888 Ga0496103_0064888_1117_2187 352
217 3300048907 Ga0496104_0473992 Ga0496104_0473992_45_1115 352
218 3300050507 nmdc:mga05p37_616230_c1 nmdc:mga05p37_616230_c1_48_1154 352
219 iso_pu_bacteria 2513237083 2513564575 352
220 iso_pu_bacteria 8003955200 8003960115 352
221 3300000546 LJNas_1000178 LJNas_10001786 353
222 3300005467 Ga0070706_100048862 Ga0070706_1000488623 353
223 3300005471 Ga0070698_100045925 Ga0070698_1000459253 353
224 3300005844 Ga0068862_100217544 Ga0068862_1002175442 353
225 3300009098 Ga0105245_10218702 Ga0105245_102187022 353
226 3300025910 Ga0207684_10070846 Ga0207684_100708462 353
227 3300042157 Ga0439458_0034216 Ga0439458_0034216_26_1087 353

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00589

Phage_integrase

Phage integrase family

204

374

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lys-assembly6.cif.gz_F crystal structure of the n-terminal domain of the prophage pi2 protein 01 (integrase) from lactococcus lactis, northeast structural genomics consortium target kr124f 0.8362 16 123
5dor-assembly1.cif.gz_B p2 integrase catalytic domain in space group p21 0.7791 150 316
1aih-assembly2.cif.gz_C catalytic domain of bacteriophage hp1 integrase 0.7766 150 329
3nkh-assembly1.cif.gz_B crystal structure of integrase from mrsa strain staphylococcus aureus 0.7688 150 334
2oxo-assembly1.cif.gz_A crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase 0.7672 16 122
ID Description Score Start End Superfamily
af_Q2FY74_2_96_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8717 16 120 1.10.150.130
af_P9WF35_2_96_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8705 15 123 1.10.150.130
af_P0A8P6_113_288_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8696 152 326 1.10.443.10
af_Q2FZ30_3_95_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.8641 17 120 1.10.150.130
af_P0ADH5_4_190_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8627 145 316 1.10.443.10
ID Description Score Start End GO Terms
AF-X0QYF4-F1-model_v4 Putative transposase 0.9748 174 280 GO:0003677
GO:0006310
GO:0015074
AF-A0A7D5G4N4-F1-model_v4 Tyr recombinase domain-containing protein 0.9521 169 264 GO:0003677
GO:0006310
GO:0015074
AF-A0A7M1SFP1-F1-model_v4 deleted 0.9264 168 327
AF-A0A7D5G4N4-F1-model_v4 Tyr recombinase domain-containing protein 0.9066 169 264 GO:0003677
GO:0006310
GO:0015074
AF-A0A2S3Y986-F1-model_v4 Integrase 0.901 9 126 GO:0003677
GO:0015074

Feature Viewer

pLDDT pTM Quality
83.32 0.63 Medium
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Predicted Structure (AlphaFold2)

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