F336367

General Info

Members Datasets Scaffolds Average Seq Length
224 186 204 316

Family's Representative Sequence

Representative Sequence 3300005347|Ga0070668_100158825|Ga0070668_1001588252
Length 350
Sequence MRAMSGPDSTTQSIGRQNIRLDWEDLMRKLLAALAAATMLALTSGADAQTYPDRTITMVVPFAAGGPTDTVTRLVAEAMSKDLGQQIVVENVGGAGGTLGAARVAKAEPDGYTLLLHHIGMATSDTLYRKLPYKTLDAFDYVGLVTDVPMTIVARKDFEATDLKSLIDYVKANKDKVTLANAGIGAASHLCGMMFMSAIQTPLVTVPYKGTGPAMTDLLGGQVDLMCDQTTNTTKHIKGGTIKAYAVTSAKRLDVLPDLPTAEEAGLTGFQVGIWHGVYAPKGTPPAVTERLAKSLQLALKDPNVVARFAELGTQPSSEADATPAALKAKLESEIARWKPVIDAAGQYAD

Samples

Sample ID Description Type Environment
1 2551306086 Sinorhizobium meliloti AK11 Isolate Nodule
2 2551306090 Sinorhizobium meliloti A0641M Isolate Nodule
3 2643221551 Mesorhizobium sp. Root1471 Isolate Unclassified
4 2643221555 Mesorhizobium sp. Root554 Isolate Unclassified
5 2643221558 Rhizobium sp. Root149 Isolate Unclassified
6 2828305725 Xanthobacter tagetidis DSM 11105 Isolate Unclassified
7 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
8 2842694124 Methylopila sp. R-72369 Isolate Unclassified
9 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
10 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
11 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
12 2906393657 Mesorhizobium sp. M7A.F.Ca.CA.001.11.2.1 Isolate Nodule
13 2916068649 Sinorhizobium meliloti USDA1220 Isolate Nodule
14 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
15 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
16 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
17 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
18 2958137437 Mesorhizobium sp. M7A.F.Ca.CA.002.04.1.1 Isolate Nodule
19 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
21 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
22 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
23 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
24 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
25 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
26 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
27 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
28 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
29 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
30 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
31 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
32 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
33 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
34 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
35 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
36 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
37 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
38 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
39 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
40 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
41 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
42 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
43 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
44 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
45 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
46 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
47 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
48 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
49 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
50 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
51 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
52 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
53 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
54 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
55 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
56 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
57 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
58 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
62 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
63 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
64 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
65 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
66 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
67 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
68 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
69 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
70 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
71 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
74 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
75 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
77 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
110 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
112 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
113 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
114 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
115 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
116 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
117 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
118 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
119 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
120 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
121 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
122 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
123 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
124 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
125 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
126 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
127 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
128 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
129 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
130 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
131 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
132 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
133 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
134 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
135 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
136 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
137 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
138 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
139 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
140 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
141 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
142 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
143 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
144 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
145 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
146 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
147 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
148 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
149 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
150 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
151 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
152 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
153 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
154 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
155 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
156 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
157 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
161 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
162 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
163 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
164 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
165 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
166 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
167 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
168 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
169 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
170 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
171 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
172 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
173 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
174 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
175 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
176 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
177 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
178 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
179 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
180 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
181 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
182 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
183 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
184 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
185 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
186 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.62
Metatranscriptomes 0.45
Isolates 8.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.27
Nodule 3.57
Rhizoplane 4.46
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 6.7

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10004533 3300003203 Bacteria 6468
2 JGI25153J46596_10029415 3300003215 Bacteria 1887
3 Ga0055531_10000179 3300003794 Bacteria 72059
4 Ga0055531_10000489 3300003794 Bacteria 36263
5 Ga0065165_1000080 3300005262 Bacteria 159638
6 Ga0070676_10071785 3300005328 Bacteria 2080
7 Ga0070683_100021767 3300005329 Bacteria 5723
8 Ga0070677_10003522 3300005333 Bacteria 5049
9 Ga0070666_10085847 3300005335 Bacteria 2156
10 Ga0070666_10251648 3300005335 Bacteria 1251
11 Ga0068868_100000130 3300005338 Bacteria 48331
12 Ga0070687_100034938 3300005343 Bacteria 2491
13 Ga0070661_100005798 3300005344 Bacteria 8494
14 Ga0070661_100245209 3300005344 Bacteria 1381
15 Ga0070668_100158825 3300005347 Bacteria 1833
16 Ga0070669_100033747 3300005353 Bacteria 3703
17 Ga0070671_100018913 3300005355 Bacteria 5600
18 Ga0070671_100378979 3300005355 Bacteria 1209
19 Ga0070674_100070040 3300005356 Bacteria 2476
20 Ga0070673_100045475 3300005364 Bacteria 3404
21 Ga0070667_100081536 3300005367 Bacteria 2769
22 Ga0070667_100323263 3300005367 Bacteria 1392
23 Ga0070700_100063193 3300005441 Bacteria 2341
24 Ga0070678_100007700 3300005456 Bacteria 6403
25 Ga0070678_100119434 3300005456 Bacteria 2076
26 Ga0068867_100129191 3300005459 Bacteria 1962
27 Ga0070684_100088778 3300005535 Bacteria 2747
28 Ga0070672_100000439 3300005543 Bacteria 24276
29 Ga0068855_100348859 3300005563 Bacteria 1631
30 Ga0070664_100246532 3300005564 Bacteria 1605
31 Ga0068854_100088125 3300005578 Bacteria 2304
32 Ga0068852_100000363 3300005616 Bacteria 30619
33 Ga0068852_100149746 3300005616 Bacteria 2169
34 Ga0068864_100184790 3300005618 Bacteria 1907
35 Ga0068861_100020406 3300005719 Bacteria 4747
36 Ga0068851_10007685 3300005834 Bacteria 4958
37 Ga0081538_10009005 3300005981 Bacteria 8383
38 Ga0081539_10000054 3300005985 Bacteria 259053
39 Ga0075365_10165411 3300006038 Bacteria 1543
40 Ga0075367_10016951 3300006178 Bacteria 3988
41 Ga0075366_10030878 3300006195 Bacteria 3151
42 Ga0075366_10095156 3300006195 Bacteria 1786
43 Ga0097621_100029345 3300006237 Bacteria 4343
44 Ga0075428_100186281 3300006844 Bacteria 2246
45 Ga0075431_100371073 3300006847 Bacteria 1436
46 Ga0075431_100570591 3300006847 Bacteria 1117
47 Ga0075433_10061123 3300006852 Bacteria 3300
48 Ga0075429_100093288 3300006880 Bacteria 2626
49 Ga0068865_100033344 3300006881 Bacteria 3448
50 Ga0105240_10030649 3300009093 Bacteria 6987
51 Ga0111539_10001601 3300009094 Bacteria 30196
52 Ga0105243_10009275 3300009148 Bacteria 7510
53 Ga0105248_10026345 3300009177 Bacteria 6467
54 Ga0105248_10198328 3300009177 Bacteria 2261
55 Ga0105248_10203587 3300009177 Bacteria 2230
56 Ga0105238_10013724 3300009551 Bacteria 8186
57 Ga0105249_10130998 3300009553 Bacteria 2394
58 Ga0157374_10010513 3300013296 Bacteria 7964
59 Ga0157374_10057998 3300013296 Bacteria 3618
60 Ga0157378_10004300 3300013297 Bacteria 12543
61 Ga0157378_10159735 3300013297 Bacteria 2107
62 Ga0163162_10018399 3300013306 Bacteria 6846
63 Ga0157375_10002629 3300013308 Bacteria 15567
64 Ga0157380_10016256 3300014326 Bacteria 5483
65 Ga0157380_10165257 3300014326 Bacteria 1928
66 Ga0157376_10021688 3300014969 Bacteria 4992
67 Ga0209675_1001233 3300025291 Bacteria 15391
68 Ga0209676_1016717 3300025292 Bacteria 2634
69 Ga0209758_1000105 3300025297 Bacteria 221415
70 Ga0209050_1005903 3300025298 Bacteria 7477
71 Ga0209051_1001396 3300025303 Bacteria 20779
72 Ga0209257_1004102 3300025304 Bacteria 11650
73 Ga0207697_10004438 3300025315 Bacteria 6703
74 Ga0207656_10002803 3300025321 Bacteria 5927
75 Ga0207682_10001269 3300025893 Bacteria 11611
76 Ga0207682_10004674 3300025893 Bacteria 5687
77 Ga0207642_10008383 3300025899 Bacteria 3541
78 Ga0207688_10001042 3300025901 Bacteria 14210
79 Ga0207680_10211043 3300025903 Bacteria 1327
80 Ga0207645_10019071 3300025907 Bacteria 4504
81 Ga0207662_10002289 3300025918 Bacteria 9591
82 Ga0207649_10151993 3300025920 Bacteria 1595
83 Ga0207681_10018008 3300025923 Bacteria 4444
84 Ga0207650_10003839 3300025925 Bacteria 10272
85 Ga0207659_10001756 3300025926 Bacteria 12832
86 Ga0207644_10128181 3300025931 Bacteria 1939
87 Ga0207706_10013423 3300025933 Bacteria 7447
88 Ga0207706_10067222 3300025933 Bacteria 3153
89 Ga0207669_10020844 3300025937 Bacteria 3446
90 Ga0207704_10032822 3300025938 Bacteria 2944
91 Ga0207691_10051973 3300025940 Bacteria 3744
92 Ga0207711_10537326 3300025941 Bacteria 1090
93 Ga0207661_10034195 3300025944 Bacteria 3951
94 Ga0207679_10022329 3300025945 Bacteria 4308
95 Ga0207651_10039251 3300025960 Bacteria 3120
96 Ga0207712_10351569 3300025961 Bacteria 1225
97 Ga0207668_10238232 3300025972 Bacteria 1471
98 Ga0207640_10067241 3300025981 Bacteria 2397
99 Ga0207658_10036088 3300025986 Bacteria 3544
100 Ga0207658_10170431 3300025986 Bacteria 1793
101 Ga0207677_10000637 3300026023 Bacteria 21182
102 Ga0207708_10047596 3300026075 Bacteria 3264
103 Ga0207708_10285612 3300026075 Bacteria 1338
104 Ga0207648_10014291 3300026089 Bacteria 7338
105 Ga0207676_10370423 3300026095 Bacteria 1330
106 Ga0207674_10014281 3300026116 Bacteria 8776
107 Ga0207675_100024348 3300026118 Bacteria 5630
108 Ga0207675_100290686 3300026118 Bacteria 1590
109 Ga0207683_10000845 3300026121 Bacteria 28102
110 Ga0207428_10000169 3300027907 Bacteria 90667
111 Ga0268265_10119930 3300028380 Bacteria 2165
112 Ga0268265_10241471 3300028380 Bacteria 1594
113 Ga0265318_10001485 3300028577 Bacteria 13712
114 Ga0307515_10000011 3300028794 Bacteria 633903
115 Ga0307515_10031865 3300028794 Bacteria 8758
116 Ga0307515_10134285 3300028794 Bacteria 2702
117 Ga0265328_10002304 3300031239 Bacteria 8604
118 Ga0265325_10137739 3300031241 Bacteria 1163
119 Ga0265329_10022705 3300031242 Bacteria 2096
120 Ga0265327_10031865 3300031251 Bacteria 2958
121 Ga0265327_10079778 3300031251 Bacteria 1619
122 Ga0265316_10008797 3300031344 Bacteria 9330
123 Ga0307408_100000301 3300031548 Bacteria 47479
124 Ga0307514_10000355 3300031649 Bacteria 106758
125 Ga0265314_10000245 3300031711 Bacteria 79757
126 Ga0265342_10013476 3300031712 Bacteria 5481
127 Ga0307413_10022777 3300031824 Bacteria 3383
128 Ga0307410_10211239 3300031852 Bacteria 1487
129 Ga0307406_10347302 3300031901 Bacteria 1158
130 Ga0307407_10087663 3300031903 Bacteria 1900
131 Ga0307407_10174572 3300031903 Bacteria 1419
132 Ga0307409_100436545 3300031995 Bacteria 1260
133 Ga0307416_100327882 3300032002 Bacteria 1537
134 Ga0307411_10041070 3300032005 Bacteria 2940
135 Ga0307507_10087355 3300033179 Bacteria 2697
136 Ga0395905_0301883 3300037471 Bacteria 1489
137 Ga0439466_0053569 3300041411 Bacteria 1316
138 Ga0451802_0208583 3300041460 Bacteria 956
139 Ga0439431_0016515 3300041997 Bacteria 1728
140 Ga0439449_0059366 3300042007 Bacteria 1412
141 Ga0450920_007394 3300042122 Bacteria 1991
142 Ga0450923_032057 3300042125 Bacteria 1075
143 Ga0450898_014859 3300042134 Bacteria 1313
144 Ga0450898_016464 3300042134 Bacteria 1261
145 Ga0450906_011822 3300042145 Bacteria 1627
146 Ga0439460_0074683 3300042461 Bacteria 1056
147 Ga0466972_0023701 3300044658 Bacteria 3051
148 Ga0466965_0010026 3300044683 Bacteria 4408
149 Ga0466965_0011726 3300044683 Bacteria 4112
150 Ga0466965_0047917 3300044683 Bacteria 2116
151 Ga0466970_0082090 3300044765 Bacteria 1743
152 Ga0451576_0049728 3300045051 Bacteria 4400
153 Ga0451576_0296017 3300045051 Bacteria 1692
154 Ga0495638_0017069 3300046460 Bacteria 4850
155 Ga0495607_0000023 3300046501 Bacteria 159908
156 Ga0495658_0055377 3300046683 Bacteria 2259
157 Ga0496102_0003186 3300048905 Bacteria 13912
158 Ga0496104_0326593 3300048907 Bacteria 1447
159 Ga0496105_0225322 3300048908 Bacteria 1525
160 Ga0496108_0162239 3300048911 Bacteria 1932
161 Ga0496109_0005794 3300048912 Bacteria 10342
162 Ga0496109_0361131 3300048912 Bacteria 1372
163 Ga0496110_0104341 3300048913 Bacteria 2543
164 Ga0496112_0048047 3300048915 Bacteria 4185
165 Ga0496113_0079523 3300048916 Bacteria 2510
166 Ga0496116_0001152 3300048919 Bacteria 31208
167 Ga0501305_005205 3300049161 Bacteria 1565
168 Ga0501039_0058054 3300049575 Bacteria 2997
169 Ga0501041_0053881 3300049577 Bacteria 2454
170 Ga0501046_0067124 3300049580 Bacteria 2794
171 Ga0501048_0144427 3300049582 Bacteria 1683
172 Ga0501071_0056389 3300049587 Bacteria 2838
173 Ga0501072_0218913 3300049588 Bacteria 1517
174 Ga0501075_0076929 3300049591 Bacteria 2525
175 Ga0501075_0084021 3300049591 Bacteria 2411
176 Ga0501075_0108551 3300049591 Bacteria 2110
177 Ga0501076_0039219 3300049592 Bacteria 3719
178 Ga0501077_0019250 3300049593 Bacteria 4317
179 Ga0501077_0113775 3300049593 Bacteria 1716
180 Ga0501079_0035578 3300049741 Bacteria 3834
181 Ga0501080_0172071 3300049742 Bacteria 1997
182 Ga0501081_0102989 3300049743 Bacteria 2020
183 nmdc:mga0yw44_1429_c1 3300050492 Bacteria 9479
184 nmdc:mga0k408_122915_c1 3300050493 Bacteria 1538
185 nmdc:mga0k408_71143_c1 3300050493 Bacteria 2030
186 nmdc:mga0qj67_117634_c1 3300050509 Bacteria 2148
187 nmdc:mga08y16_199942_c1 3300050511 Bacteria 2071
188 nmdc:mga08y16_539_c1 3300050511 Bacteria 35073
189 nmdc:mga08y16_667289_c1 3300050511 Bacteria 1042
190 nmdc:mga0a205_46569_c1 3300050515 Bacteria 4182
191 Ga0500593_000036 3300053117 Bacteria 47889
192 Ga0500593_000392 3300053117 Bacteria 17496
193 Ga0500618_000181 3300053125 Bacteria 52402
194 Ga0500568_0000002 3300053139 Bacteria 880601
195 Ga0500573_0011020 3300053140 Bacteria 5056
196 Ga0500616_0049856 3300053153 Bacteria 2213
197 Ga0501084_0142147 3300054114 Bacteria 2021
198 Ga0590071_002399 3300059421 Bacteria 4708
199 Ga0590074_011376 3300059423 Bacteria 1492
200 Ga0590075_029993 3300059424 Bacteria 1377
201 Ga0501082_0118488 3300060353 Bacteria 2294
202 Ga0501082_0133903 3300060353 Bacteria 2150
203 Ga0466962_0135612 3300061719 Bacteria 1191
204 Ga0530510_0036021 3300061734 Bacteria 3567

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300025315 Ga0207697_10004438 Ga0207697_100044384 264
2 3300028380 Ga0268265_10241471 Ga0268265_102414711 264
3 3300005329 Ga0070683_100021767 Ga0070683_1000217675 269
4 3300005333 Ga0070677_10003522 Ga0070677_100035225 269
5 3300005338 Ga0068868_100000130 Ga0068868_10000013019 269
6 3300005344 Ga0070661_100005798 Ga0070661_1000057988 269
7 3300005355 Ga0070671_100018913 Ga0070671_1000189132 269
8 3300005364 Ga0070673_100045475 Ga0070673_1000454752 269
9 3300005367 Ga0070667_100323263 Ga0070667_1003232631 269
10 3300005459 Ga0068867_100129191 Ga0068867_1001291913 269
11 3300005543 Ga0070672_100000439 Ga0070672_1000004392 269
12 3300005616 Ga0068852_100000363 Ga0068852_1000003632 269
13 3300013297 Ga0157378_10004300 Ga0157378_1000430012 269
14 3300025926 Ga0207659_10001756 Ga0207659_100017562 269
15 3300025933 Ga0207706_10067222 Ga0207706_100672225 269
16 3300026023 Ga0207677_10000637 Ga0207677_100006372 269
17 3300026121 Ga0207683_10000845 Ga0207683_1000084527 269
18 3300041460 Ga0451802_0208583 Ga0451802_0208583_91_900 269
19 iso_pu_bacteria 2906393657 2906400752 286
20 3300025920 Ga0207649_10151993 Ga0207649_101519932 289
21 iso_pu_bacteria 2933016740 2933022117 289
22 3300025907 Ga0207645_10019071 Ga0207645_100190711 290
23 3300026118 Ga0207675_100290686 Ga0207675_1002906862 290
24 3300045051 Ga0451576_0049728 Ga0451576_0049728_2110_2985 291
25 3300005441 Ga0070700_100063193 Ga0070700_1000631934 293
26 3300025899 Ga0207642_10008383 Ga0207642_100083834 293
27 3300025901 Ga0207688_10001042 Ga0207688_100010428 293
28 3300025972 Ga0207668_10238232 Ga0207668_102382322 293
29 3300026075 Ga0207708_10047596 Ga0207708_100475961 293
30 3300031251 Ga0265327_10031865 Ga0265327_100318651 294
31 3300049588 Ga0501072_0218913 Ga0501072_0218913_613_1503 296
32 iso_pu_bacteria 2958137437 2958142262 303
33 3300005563 Ga0068855_100348859 Ga0068855_1003488592 305
34 3300042125 Ga0450923_032057 Ga0450923_032057_140_1057 305
35 3300003215 JGI25153J46596_10029415 JGI25153J46596_100294151 308
36 3300003794 Ga0055531_10000489 Ga0055531_1000048910 308
37 3300025292 Ga0209676_1016717 Ga0209676_10167172 308
38 3300025297 Ga0209758_1000105 Ga0209758_1000105164 308
39 3300025298 Ga0209050_1005903 Ga0209050_10059033 308
40 3300025303 Ga0209051_1001396 Ga0209051_100139618 308
41 3300025304 Ga0209257_1004102 Ga0209257_10041028 308
42 3300048919 Ga0496116_0001152 Ga0496116_0001152_20549_21610 308
43 iso_pu_bacteria 2916068649 2916076320 308
44 3300028794 Ga0307515_10000011 Ga0307515_1000001110 309
45 3300044658 Ga0466972_0023701 Ga0466972_0023701_1933_2874 309
46 3300049575 Ga0501039_0058054 Ga0501039_0058054_493_1470 310
47 3300028577 Ga0265318_10001485 Ga0265318_1000148511 313
48 3300031239 Ga0265328_10002304 Ga0265328_100023047 313
49 3300031241 Ga0265325_10137739 Ga0265325_101377391 313
50 3300031242 Ga0265329_10022705 Ga0265329_100227052 313
51 3300031344 Ga0265316_10008797 Ga0265316_100087976 313
52 3300031711 Ga0265314_10000245 Ga0265314_1000024527 313
53 3300031712 Ga0265342_10013476 Ga0265342_100134762 313
54 3300050511 nmdc:mga08y16_667289_c1 nmdc:mga08y16_667289_c1_34_978 314
55 3300053140 Ga0500573_0011020 Ga0500573_0011020_1626_2609 314
56 iso_pu_bacteria 2551306086 2551692107 314
57 iso_pu_bacteria 2551306090 2551720499 314
58 iso_pu_bacteria 2883577096 2883578496 315
59 3300005616 Ga0068852_100149746 Ga0068852_1001497462 316
60 3300033179 Ga0307507_10087355 Ga0307507_100873552 316
61 3300005335 Ga0070666_10251648 Ga0070666_102516481 317
62 3300005456 Ga0070678_100007700 Ga0070678_1000077002 317
63 3300005535 Ga0070684_100088778 Ga0070684_1000887782 317
64 3300005564 Ga0070664_100246532 Ga0070664_1002465322 317
65 3300005578 Ga0068854_100088125 Ga0068854_1000881251 317
66 3300005834 Ga0068851_10007685 Ga0068851_100076856 317
67 3300006237 Ga0097621_100029345 Ga0097621_1000293455 317
68 3300009177 Ga0105248_10198328 Ga0105248_101983283 317
69 3300013296 Ga0157374_10010513 Ga0157374_100105135 317
70 3300013306 Ga0163162_10018399 Ga0163162_100183992 317
71 3300013308 Ga0157375_10002629 Ga0157375_100026298 317
72 3300014969 Ga0157376_10021688 Ga0157376_100216886 317
73 3300025321 Ga0207656_10002803 Ga0207656_100028033 317
74 3300025893 Ga0207682_10004674 Ga0207682_100046744 317
75 3300025903 Ga0207680_10211043 Ga0207680_102110431 317
76 3300025925 Ga0207650_10003839 Ga0207650_100038399 317
77 3300025940 Ga0207691_10051973 Ga0207691_100519735 317
78 3300025944 Ga0207661_10034195 Ga0207661_100341952 317
79 3300025945 Ga0207679_10022329 Ga0207679_100223292 317
80 3300025960 Ga0207651_10039251 Ga0207651_100392512 317
81 3300025981 Ga0207640_10067241 Ga0207640_100672413 317
82 3300025986 Ga0207658_10036088 Ga0207658_100360885 317
83 3300026075 Ga0207708_10285612 Ga0207708_102856121 317
84 3300026089 Ga0207648_10014291 Ga0207648_100142912 317
85 3300048911 Ga0496108_0162239 Ga0496108_0162239_307_1260 317
86 3300048912 Ga0496109_0005794 Ga0496109_0005794_496_1449 317
87 3300048913 Ga0496110_0104341 Ga0496110_0104341_275_1228 317
88 3300005328 Ga0070676_10071785 Ga0070676_100717853 319
89 3300005335 Ga0070666_10085847 Ga0070666_100858474 319
90 3300005343 Ga0070687_100034938 Ga0070687_1000349384 319
91 3300005344 Ga0070661_100245209 Ga0070661_1002452091 319
92 3300005356 Ga0070674_100070040 Ga0070674_1000700404 319
93 3300005456 Ga0070678_100119434 Ga0070678_1001194343 319
94 3300005618 Ga0068864_100184790 Ga0068864_1001847902 319
95 3300009177 Ga0105248_10203587 Ga0105248_102035872 319
96 3300013296 Ga0157374_10057998 Ga0157374_100579985 319
97 3300013297 Ga0157378_10159735 Ga0157378_101597353 319
98 3300025893 Ga0207682_10001269 Ga0207682_1000126912 319
99 3300025918 Ga0207662_10002289 Ga0207662_100022896 319
100 3300025931 Ga0207644_10128181 Ga0207644_101281813 319
101 3300025933 Ga0207706_10013423 Ga0207706_100134234 319
102 3300026116 Ga0207674_10014281 Ga0207674_100142818 319
103 3300044683 Ga0466965_0047917 Ga0466965_0047917_864_1835 319
104 3300046683 Ga0495658_0055377 Ga0495658_0055377_1227_2186 319
105 3300050493 nmdc:mga0k408_71143_c1 nmdc:mga0k408_71143_c1_782_1753 319
106 iso_pu_bacteria 2828305725 2828309886 319
107 iso_pu_bacteria 2842333319 2842334937 319
108 iso_pu_bacteria 2842333319 2842339210 319
109 iso_pu_bacteria 2842694124 2842695547 319
110 3300005262 Ga0065165_1000080 Ga0065165_100008084 320
111 3300005355 Ga0070671_100378979 Ga0070671_1003789791 320
112 3300006195 Ga0075366_10095156 Ga0075366_100951562 320
113 3300009093 Ga0105240_10030649 Ga0105240_100306492 320
114 3300009177 Ga0105248_10026345 Ga0105248_100263451 320
115 3300009551 Ga0105238_10013724 Ga0105238_100137247 320
116 3300009553 Ga0105249_10130998 Ga0105249_101309983 320
117 3300014326 Ga0157380_10016256 Ga0157380_100162566 320
118 3300025941 Ga0207711_10537326 Ga0207711_105373261 320
119 3300026095 Ga0207676_10370423 Ga0207676_103704231 320
120 3300028380 Ga0268265_10119930 Ga0268265_101199302 320
121 3300028794 Ga0307515_10031865 Ga0307515_100318657 320
122 3300028794 Ga0307515_10134285 Ga0307515_101342851 320
123 3300031901 Ga0307406_10347302 Ga0307406_103473021 320
124 3300041997 Ga0439431_0016515 Ga0439431_0016515_534_1502 320
125 3300042007 Ga0439449_0059366 Ga0439449_0059366_395_1366 320
126 3300042134 Ga0450898_014859 Ga0450898_014859_177_1148 320
127 3300042134 Ga0450898_016464 Ga0450898_016464_136_1104 320
128 3300042461 Ga0439460_0074683 Ga0439460_0074683_12_974 320
129 3300044683 Ga0466965_0010026 Ga0466965_0010026_2731_3702 320
130 3300044765 Ga0466970_0082090 Ga0466970_0082090_169_1140 320
131 3300048907 Ga0496104_0326593 Ga0496104_0326593_127_1095 320
132 3300048908 Ga0496105_0225322 Ga0496105_0225322_217_1185 320
133 3300048912 Ga0496109_0361131 Ga0496109_0361131_64_1032 320
134 3300048915 Ga0496112_0048047 Ga0496112_0048047_1817_2785 320
135 3300048916 Ga0496113_0079523 Ga0496113_0079523_1303_2271 320
136 3300050511 nmdc:mga08y16_199942_c1 nmdc:mga08y16_199942_c1_457_1425 320
137 3300061719 Ga0466962_0135612 Ga0466962_0135612_52_1023 320
138 3300003794 Ga0055531_10000179 Ga0055531_1000017940 321
139 3300006844 Ga0075428_100186281 Ga0075428_1001862813 321
140 3300048905 Ga0496102_0003186 Ga0496102_0003186_9766_10731 321
141 3300053117 Ga0500593_000036 Ga0500593_000036_24742_25707 321
142 3300053117 Ga0500593_000392 Ga0500593_000392_13076_14041 321
143 3300053139 Ga0500568_0000002 Ga0500568_0000002_152806_153771 321
144 3300053153 Ga0500616_0049856 Ga0500616_0049856_421_1386 321
145 iso_pu_bacteria 2643221551 2643775073 321
146 iso_pu_bacteria 2643221555 2643793518 321
147 iso_pu_bacteria 2643221558 2643813392 321
148 iso_pu_bacteria 2857576091 2857580757 321
149 iso_pu_bacteria 2928521798 2928523552 321
150 iso_pu_bacteria 2929199973 2929201307 321
151 iso_pu_bacteria 2954011201 2954015833 321
152 iso_pu_bacteria 8055909800 8055910074 321
153 3300025961 Ga0207712_10351569 Ga0207712_103515692 322
154 3300031649 Ga0307514_10000355 Ga0307514_1000035580 322
155 3300049591 Ga0501075_0076929 Ga0501075_0076929_287_1255 322
156 3300060353 Ga0501082_0118488 Ga0501082_0118488_1071_2039 322
157 3300005353 Ga0070669_100033747 Ga0070669_1000337473 323
158 3300005719 Ga0068861_100020406 Ga0068861_1000204065 323
159 3300006195 Ga0075366_10030878 Ga0075366_100308782 323
160 3300006847 Ga0075431_100371073 Ga0075431_1003710732 323
161 3300006852 Ga0075433_10061123 Ga0075433_100611232 323
162 3300006880 Ga0075429_100093288 Ga0075429_1000932882 323
163 3300006881 Ga0068865_100033344 Ga0068865_1000333442 323
164 3300025291 Ga0209675_1001233 Ga0209675_100123312 323
165 3300025923 Ga0207681_10018008 Ga0207681_100180083 323
166 3300025937 Ga0207669_10020844 Ga0207669_100208444 323
167 3300025938 Ga0207704_10032822 Ga0207704_100328223 323
168 3300026118 Ga0207675_100024348 Ga0207675_1000243482 323
169 3300031903 Ga0307407_10174572 Ga0307407_101745722 323
170 3300041411 Ga0439466_0053569 Ga0439466_0053569_333_1304 323
171 3300042122 Ga0450920_007394 Ga0450920_007394_445_1416 323
172 3300042145 Ga0450906_011822 Ga0450906_011822_402_1373 323
173 3300045051 Ga0451576_0296017 Ga0451576_0296017_300_1280 323
174 3300049582 Ga0501048_0144427 Ga0501048_0144427_188_1162 323
175 3300049591 Ga0501075_0108551 Ga0501075_0108551_749_1723 323
176 3300049593 Ga0501077_0113775 Ga0501077_0113775_667_1641 323
177 3300049743 Ga0501081_0102989 Ga0501081_0102989_622_1596 323
178 3300050509 nmdc:mga0qj67_117634_c1 nmdc:mga0qj67_117634_c1_453_1424 323
179 3300050515 nmdc:mga0a205_46569_c1 nmdc:mga0a205_46569_c1_1417_2394 323
180 3300059421 Ga0590071_002399 Ga0590071_002399_3490_4467 323
181 3300059423 Ga0590074_011376 Ga0590074_011376_314_1291 323
182 3300059424 Ga0590075_029993 Ga0590075_029993_385_1362 323
183 iso_pu_bacteria 2842775625 2842780242 323
184 3300025986 Ga0207658_10170431 Ga0207658_101704311 324
185 3300031251 Ga0265327_10079778 Ga0265327_100797782 324
186 3300031548 Ga0307408_100000301 Ga0307408_10000030142 324
187 3300031995 Ga0307409_100436545 Ga0307409_1004365451 324
188 3300032002 Ga0307416_100327882 Ga0307416_1003278821 324
189 3300044683 Ga0466965_0011726 Ga0466965_0011726_1123_2097 324
190 3300046460 Ga0495638_0017069 Ga0495638_0017069_1004_1978 324
191 3300046501 Ga0495607_0000023 Ga0495607_0000023_41500_42477 324
192 3300049161 Ga0501305_005205 Ga0501305_005205_18_1001 324
193 3300050493 nmdc:mga0k408_122915_c1 nmdc:mga0k408_122915_c1_223_1260 324
194 3300005347 Ga0070668_100158825 Ga0070668_1001588252 325
195 3300005367 Ga0070667_100081536 Ga0070667_1000815363 325
196 3300005981 Ga0081538_10009005 Ga0081538_100090058 325
197 3300014326 Ga0157380_10165257 Ga0157380_101652572 325
198 3300031824 Ga0307413_10022777 Ga0307413_100227772 325
199 3300031852 Ga0307410_10211239 Ga0307410_102112392 325
200 3300031903 Ga0307407_10087663 Ga0307407_100876632 325
201 3300032005 Ga0307411_10041070 Ga0307411_100410704 325
202 3300037471 Ga0395905_0301883 Ga0395905_0301883_294_1283 325
203 3300049577 Ga0501041_0053881 Ga0501041_0053881_1354_2331 325
204 3300049580 Ga0501046_0067124 Ga0501046_0067124_1795_2772 325
205 3300049587 Ga0501071_0056389 Ga0501071_0056389_1180_2157 325
206 3300049591 Ga0501075_0084021 Ga0501075_0084021_665_1642 325
207 3300049592 Ga0501076_0039219 Ga0501076_0039219_1606_2583 325
208 3300049593 Ga0501077_0019250 Ga0501077_0019250_691_1668 325
209 3300049741 Ga0501079_0035578 Ga0501079_0035578_2696_3673 325
210 3300049742 Ga0501080_0172071 Ga0501080_0172071_650_1627 325
211 3300053125 Ga0500618_000181 Ga0500618_000181_25706_26719 325
212 3300054114 Ga0501084_0142147 Ga0501084_0142147_865_1842 325
213 3300060353 Ga0501082_0133903 Ga0501082_0133903_816_1793 325
214 3300061734 Ga0530510_0036021 Ga0530510_0036021_750_1727 325
215 3300006038 Ga0075365_10165411 Ga0075365_101654111 326
216 3300006178 Ga0075367_10016951 Ga0075367_100169513 326
217 3300009148 Ga0105243_10009275 Ga0105243_100092756 326
218 3300050492 nmdc:mga0yw44_1429_c1 nmdc:mga0yw44_1429_c1_7393_8376 326
219 3300006847 Ga0075431_100570591 Ga0075431_1005705911 327
220 3300009094 Ga0111539_10001601 Ga0111539_1000160130 327
221 3300027907 Ga0207428_10000169 Ga0207428_1000016995 327
222 3300050511 nmdc:mga08y16_539_c1 nmdc:mga08y16_539_c1_27723_28712 327
223 3300003203 JGI25406J46586_10004533 JGI25406J46586_100045335 328
224 3300005985 Ga0081539_10000054 Ga0081539_10000054162 328

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

71

347

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.9591 29 328
6hke-assembly1.cif.gz_A matc (rpa3494) from rhodopseudomonas palustris with bound malate 0.9561 29 320
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.956 29 328
8hkb-assembly1.cif.gz_A tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d 0.9559 32 328
5oku-assembly1.cif.gz_A r. palustris rpa4515 with adipate 0.9531 28 324
ID Description Score Start End Superfamily
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9755 128 250 3.40.190.10
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9602 128 250 3.40.190.10
2f5xC01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9557 29 328 3.40.190.150
2f5xC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9557 129 250 3.40.190.10
2f5xC01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9502 29 328 3.40.190.150
ID Description Score Start End GO Terms
AF-A0A537USM6-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9758 21 328
AF-A0A1F4AHA8-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9755 54 324
AF-A0A1F4CWQ1-F1-model_v4 LacI family transcriptional regulator 0.9729 29 328
AF-A0A1Q4BG09-F1-model_v4 ABC transporter substrate-binding protein 0.9723 28 328
AF-A0A537TDW9-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein BugD 0.9722 72 234

Feature Viewer

pLDDT pTM Quality
90.95 0.85 High
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Predicted Structure (AlphaFold2)

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