F335085

General Info

Members Datasets Scaffolds Average Seq Length
222 169 444 347

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3006486233|3006493625
Length 368
Sequence RSTVQESAMSDPTTVPPITVPPITVPPITVPPFAVIGGAQVQYTLQGRERETVELVEATYRLHAAGESVNPPSYFLRFPDRPTARIIALPASIGGQARVDGLKWISSFPDNVRAGIPRASAVLILNDHDTGYPFACLESSIISATRTAAMAASAADTLSRARGTRPTRIGFFGTGLIARYVHTFLAATGWSFDEVGVHDTSADSAAGFHHYLRGAHTTTRITVHDNPEKLIRSSDLVVFATVASRPHITEPAWFGHNPLVLHVSLRDLAPEILLASFNIVDDIEHCLKADTSPHLAEQLTGHRDFLTGTLHDVTAGRAALADDRPLVFSPFGLGVLDLAIGKHVYDEVIRTGQLHVIDDFFHELHRFG

Samples

Sample ID Description Type Environment
1 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
33 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
79 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
81 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
82 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
83 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
84 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
87 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
88 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
89 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
90 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
91 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
92 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
93 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
94 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
95 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
96 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
97 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
98 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
99 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
100 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
101 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
102 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
103 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
104 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
105 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
106 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
107 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
108 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
109 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
110 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
111 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
112 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
113 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
114 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
115 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
116 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
117 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
118 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
119 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
120 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
121 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
122 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
123 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
124 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
125 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
126 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
127 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
128 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
129 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
130 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
131 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
132 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
133 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
134 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
135 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
136 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
137 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
138 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
139 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
140 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
141 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
142 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
143 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
144 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
145 3300059605 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
146 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
147 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
148 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
149 2558860280 Kutzneria sp. 744 Isolate Unclassified
150 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
151 2648501693 Pantoea ananatis B1-9 Isolate Rhizosphere
152 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
153 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
154 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
155 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
156 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
157 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
158 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
159 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
160 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
161 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
162 2920879853 Kocuria salina CV6 Isolate Unclassified
163 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
164 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
165 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
166 8019638758 Bradyrhizobium sp. GM5.1 Isolate Nodule
167 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
168 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
169 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.04
Metatranscriptomes 0.9
Isolates 13.06

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.45
Nodule 0.45
Rhizoplane 4.05
Rhizosphere 83.78
Stem 0
Stem Tuber 0
Unclassified 0.9

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1246358 3300003578 Bacteria 60288
2 Ga0070683_100063133 3300005329 Bacteria 3445
3 Ga0068869_100014794 3300005334 Bacteria 5219
4 Ga0070660_100070475 3300005339 Bacteria 2728
5 Ga0070689_100024260 3300005340 Bacteria 4547
6 Ga0070671_100141957 3300005355 Bacteria 2027
7 Ga0070674_100027329 3300005356 Bacteria 3738
8 Ga0070688_100196843 3300005365 Bacteria 1407
9 Ga0070659_100037674 3300005366 Bacteria 3770
10 Ga0070659_100220668 3300005366 Bacteria 1564
11 Ga0070667_100059032 3300005367 Bacteria 3245
12 Ga0070714_100012733 3300005435 Bacteria 6720
13 Ga0070713_100067195 3300005436 Bacteria 3018
14 Ga0070710_10000094 3300005437 Bacteria 40516
15 Ga0070710_10045601 3300005437 Bacteria 2438
16 Ga0070700_100009051 3300005441 Bacteria 5456
17 Ga0070700_100011331 3300005441 Bacteria 4935
18 Ga0070663_100018418 3300005455 Bacteria 4578
19 Ga0070663_100166318 3300005455 Bacteria 1702
20 Ga0070662_100076472 3300005457 Bacteria 2482
21 Ga0068867_100114782 3300005459 Bacteria 2074
22 Ga0070685_10218313 3300005466 Bacteria 1248
23 Ga0070684_100031361 3300005535 Bacteria 4524
24 Ga0068853_100015997 3300005539 Bacteria 6169
25 Ga0070693_100142994 3300005547 Bacteria 1508
26 Ga0070665_100018241 3300005548 Bacteria 7039
27 Ga0070665_100479048 3300005548 Bacteria 1255
28 Ga0068857_100186156 3300005577 Bacteria 1890
29 Ga0068854_100037839 3300005578 Bacteria 3389
30 Ga0068852_100023394 3300005616 Bacteria 4972
31 Ga0068859_100004702 3300005617 Bacteria 13886
32 Ga0068859_100159368 3300005617 Bacteria 2335
33 Ga0068864_100015353 3300005618 Bacteria 6368
34 Ga0068861_100059626 3300005719 Bacteria 2923
35 Ga0068863_100003928 3300005841 Bacteria 14685
36 Ga0068858_100279535 3300005842 Bacteria 1589
37 Ga0068862_100281507 3300005844 Bacteria 1524
38 Ga0081455_10034553 3300005937 Bacteria 4528
39 Ga0081455_10036459 3300005937 Bacteria 4378
40 Ga0075432_10000104 3300006058 Bacteria 18265
41 Ga0075428_100000278 3300006844 Bacteria 50137
42 Ga0075434_100046744 3300006871 Bacteria 4295
43 Ga0075436_100001686 3300006914 Bacteria 15099
44 Ga0097620_100004702 3300006931 Bacteria 13886
45 Ga0097620_100159357 3300006931 Bacteria 2335
46 Ga0075435_100014883 3300007076 Bacteria 5833
47 Ga0111539_10002941 3300009094 Bacteria 22594
48 Ga0111539_10090682 3300009094 Bacteria 3592
49 Ga0105245_10032718 3300009098 Bacteria 4604
50 Ga0105243_10000154 3300009148 Bacteria 78753
51 Ga0105241_10214926 3300009174 Bacteria 1613
52 Ga0105241_10238100 3300009174 Bacteria 1537
53 Ga0105242_10000053 3300009176 Bacteria 78753
54 Ga0105248_10001675 3300009177 Bacteria 24662
55 Ga0105248_10314690 3300009177 Bacteria 1763
56 Ga0105237_10080435 3300009545 Bacteria 3249
57 Ga0105249_10121738 3300009553 Unclassified 2480
58 Ga0157378_10521066 3300013297 Bacteria 1190
59 Ga0163162_10117059 3300013306 Bacteria 2766
60 Ga0157372_10041361 3300013307 Bacteria 5096
61 Ga0163163_10001549 3300014325 Bacteria 19376
62 Ga0182008_10033282 3300014497 Bacteria 2586
63 Ga0163161_10000442 3300017792 Bacteria 34624
64 Ga0207692_10032265 3300025898 Bacteria 2516
65 Ga0207710_10034070 3300025900 Bacteria 2236
66 Ga0207688_10001869 3300025901 Bacteria 11275
67 Ga0207688_10053688 3300025901 Bacteria 2260
68 Ga0207645_10157799 3300025907 Bacteria 1483
69 Ga0207657_10019700 3300025919 Bacteria 6398
70 Ga0207687_10178454 3300025927 Bacteria 1644
71 Ga0207700_10139868 3300025928 Bacteria 1988
72 Ga0207664_10127110 3300025929 Bacteria 2141
73 Ga0207706_10052126 3300025933 Bacteria 3612
74 Ga0207686_10000046 3300025934 Bacteria 119562
75 Ga0207709_10000041 3300025935 Bacteria 258279
76 Ga0207670_10013611 3300025936 Bacteria 4802
77 Ga0207665_10042216 3300025939 Bacteria 3048
78 Ga0207711_10100198 3300025941 Bacteria 2562
79 Ga0207689_10069363 3300025942 Bacteria 2896
80 Ga0207661_10041848 3300025944 Bacteria 3609
81 Ga0207668_10077639 3300025972 Bacteria 2395
82 Ga0207703_10338299 3300026035 Bacteria 1382
83 Ga0207639_10040146 3300026041 Bacteria 3491
84 Ga0207639_10186613 3300026041 Bacteria 1768
85 Ga0207678_10060199 3300026067 Bacteria 3266
86 Ga0207678_10095377 3300026067 Bacteria 2542
87 Ga0207708_10021711 3300026075 Bacteria 4843
88 Ga0207708_10146517 3300026075 Bacteria 1856
89 Ga0207708_10431822 3300026075 Bacteria 1094
90 Ga0207702_10390287 3300026078 Bacteria 1340
91 Ga0207648_10222111 3300026089 Bacteria 1679
92 Ga0207676_10174923 3300026095 Bacteria 1874
93 Ga0207675_100023002 3300026118 Bacteria 5797
94 Ga0207675_100092176 3300026118 Unclassified 2849
95 Ga0207428_10003528 3300027907 Bacteria 15139
96 Ga0268266_10113388 3300028379 Bacteria 2404
97 Ga0307511_10000088 3300030521 Bacteria 77229
98 Ga0307511_10000157 3300030521 Bacteria 65363
99 Ga0307511_10000279 3300030521 Bacteria 53657
100 Ga0307511_10002257 3300030521 Bacteria 20148
101 Ga0307512_10099844 3300030522 Bacteria 1972
102 Ga0307513_10074713 3300031456 Bacteria 3523
103 Ga0307513_10076784 3300031456 Bacteria 3462
104 Ga0307514_10051040 3300031649 Bacteria 3207
105 Ga0307507_10074990 3300033179 Bacteria 3029
106 Ga0395900_0102129 3300037418 Bacteria 2946
107 Ga0395900_0160974 3300037418 Bacteria 2289
108 Ga0436364_0246913 3300037853 Bacteria 2356
109 Ga0400485_14421 3300038735 Bacteria 12148
110 Ga0400486_06936 3300038742 Bacteria 25297
111 Ga0436365_0272644 3300039437 Bacteria 2503
112 Ga0439449_0000617 3300042007 Bacteria 13301
113 Ga0439459_0034222 3300042438 Bacteria 1050
114 Ga0466969_0000163 3300044656 Bacteria 36233
115 Ga0466969_0098742 3300044656 Bacteria 1376
116 Ga0466972_0012235 3300044658 Bacteria 4314
117 Ga0466972_0055400 3300044658 Bacteria 1907
118 Ga0466965_0009762 3300044683 Bacteria 4465
119 Ga0466965_0018955 3300044683 Bacteria 3302
120 Ga0466965_0113687 3300044683 Bacteria 1393
121 Ga0466966_0002246 3300044684 Bacteria 12577
122 Ga0466966_0032737 3300044684 Bacteria 3366
123 Ga0466966_0045279 3300044684 Bacteria 2813
124 Ga0466961_0003727 3300044693 Bacteria 9521
125 Ga0466961_0008975 3300044693 Bacteria 6378
126 Ga0466963_0231565 3300044694 Bacteria 1295
127 Ga0466964_0000282 3300044706 Bacteria 14805
128 Ga0466968_0001049 3300044735 Bacteria 9785
129 Ga0466970_0000269 3300044765 Bacteria 25428
130 Ga0466970_0002534 3300044765 Bacteria 8818
131 Ga0466970_0052388 3300044765 Bacteria 2178
132 Ga0466970_0102602 3300044765 Bacteria 1558
133 Ga0466957_0001408 3300044842 Bacteria 12539
134 Ga0466957_0065283 3300044842 Bacteria 2241
135 Ga0466960_0001401 3300044901 Bacteria 8769
136 Ga0466960_0048181 3300044901 Bacteria 2047
137 Ga0466959_0000775 3300045049 Bacteria 18744
138 Ga0466958_0238188 3300045836 Bacteria 1163
139 Ga0466967_0032084 3300045976 Bacteria 4431
140 Ga0466967_0049687 3300045976 Bacteria 3669
141 Ga0466967_0367718 3300045976 Bacteria 1394
142 Ga0495592_0048449 3300046454 Bacteria 3161
143 Ga0495629_0042851 3300046459 Bacteria 3179
144 Ga0495651_0001703 3300046462 Bacteria 16973
145 Ga0495651_0025765 3300046462 Bacteria 4579
146 Ga0495594_0001039 3300046499 Bacteria 14456
147 Ga0495594_0051311 3300046499 Bacteria 2270
148 Ga0495608_0061594 3300046511 Bacteria 2467
149 Ga0495618_0007256 3300046514 Bacteria 6706
150 Ga0495628_0007832 3300046516 Bacteria 9210
151 Ga0495628_0022745 3300046516 Bacteria 5148
152 Ga0495652_0002225 3300046529 Bacteria 20334
153 Ga0495645_0088429 3300046543 Bacteria 2216
154 Ga0495645_0098387 3300046543 Bacteria 2082
155 Ga0495622_0003186 3300046557 Bacteria 7771
156 Ga0495668_0001135 3300046616 Bacteria 27271
157 Ga0495635_0004654 3300046663 Bacteria 9525
158 Ga0495635_0045646 3300046663 Bacteria 3023
159 Ga0495657_0040166 3300046675 Bacteria 3211
160 Ga0495646_0001712 3300046680 Bacteria 13154
161 Ga0495589_0121212 3300046794 Bacteria 1259
162 Ga0495600_0049787 3300046809 Bacteria 2733
163 Ga0495600_0254030 3300046809 Bacteria 1118
164 Ga0495676_0002131 3300047321 Bacteria 17475
165 Ga0495687_009782 3300047443 Bacteria 5326
166 Ga0495679_004845 3300047446 Bacteria 6082
167 Ga0495602_0100872 3300048088 Bacteria 2369
168 Ga0495614_0070368 3300048089 Bacteria 1507
169 Ga0496102_0055591 3300048905 Bacteria 3609
170 Ga0496102_0117041 3300048905 Bacteria 2487
171 Ga0496102_0127379 3300048905 Bacteria 2381
172 Ga0496103_0067096 3300048906 Bacteria 2240
173 Ga0496104_0044457 3300048907 Bacteria 4173
174 Ga0496105_0102351 3300048908 Bacteria 2365
175 Ga0496112_0004553 3300048915 Bacteria 11779
176 Ga0496112_0063820 3300048915 Bacteria 3633
177 Ga0496113_0340058 3300048916 Bacteria 1204
178 Ga0501047_0000236 3300049581 Bacteria 65453
179 Ga0501044_0004200 3300049823 Bacteria 16191
180 nmdc:mga06r32_460004_c1 3300050510 Bacteria 1251
181 nmdc:mga08y16_31613_c1 3300050511 Bacteria 5567
182 nmdc:mga08y16_72422_c1 3300050511 Bacteria 3591
183 nmdc:mga0n895_16597_c1 3300050512 Bacteria 6762
184 nmdc:mga0rr50_22243_c1 3300050513 Bacteria 4348
185 nmdc:mga08x19_4321_c1 3300050514 Bacteria 8416
186 nmdc:mga0a205_5990_c1 3300050515 Bacteria 10959
187 Ga0495601_0007463 3300053077 Bacteria 6414
188 Ga0495601_0008258 3300053077 Bacteria 6144
189 Ga0495612_0004455 3300053078 Bacteria 5810
190 Ga0495619_0110590 3300053085 Bacteria 1877
191 Ga0500560_000822 3300053107 Bacteria 4793
192 Ga0587106_012389 3300059605 Bacteria 1143
193 Ga0466962_0020185 3300061719 Bacteria 3203
194 3006493625 3006486233 Bacteria 8157040
195 2537899063 2537561592 Bacteria 4348607
196 2559423401 2558860280 Bacteria 11429938
197 2559426688 2558860280 Bacteria 11429938
198 2559432469 2558860280 Bacteria 11429938
199 2616903425 2616644941 Bacteria 8510691
200 2650899289 2648501693 Bacteria 5069560
201 2753071786 2751185734 Bacteria 8863695
202 2776372829 2775506925 Bacteria 7237746
203 2863074065 2863067949 Bacteria 8541735
204 2870724957 2870721527 Bacteria 9689237
205 2870783485 2870782633 Bacteria 9624083
206 2870787055 2870782633 Bacteria 9624083
207 2912716777 2912715099 Bacteria 9460473
208 2912723849 2912715099 Bacteria 9460473
209 2912726487 2912723979 Bacteria 8557534
210 2915358362 2915358134 Bacteria 6050864
211 2917744507 2917736166 Bacteria 9690793
212 2919395849 2919391150 Bacteria 4884741
213 2920883586 2920879853 Bacteria 4216831
214 3003000671 3002998708 Bacteria 11715108
215 3006491696 3006486233 Bacteria 8157040
216 8003871063 8003870546 Bacteria 7396674
217 8008576559 8008574985 Bacteria 7815457
218 8008577672 8008574985 Bacteria 7815457
219 8019648030 8019638758 Bacteria 9062356
220 8047719042 8047710418 Bacteria 11023148
221 8054478125 8054472261 Bacteria 7464355
222 8056836427 8056829672 Bacteria 9045328
223 Ga0006562J51391_1246358
224 Ga0070683_100063133
225 Ga0068869_100014794
226 Ga0070660_100070475
227 Ga0070689_100024260
228 Ga0070671_100141957
229 Ga0070674_100027329
230 Ga0070688_100196843
231 Ga0070659_100037674
232 Ga0070659_100220668
233 Ga0070667_100059032
234 Ga0070714_100012733
235 Ga0070713_100067195
236 Ga0070710_10000094
237 Ga0070710_10045601
238 Ga0070700_100009051
239 Ga0070700_100011331
240 Ga0070663_100018418
241 Ga0070663_100166318
242 Ga0070662_100076472
243 Ga0068867_100114782
244 Ga0070685_10218313
245 Ga0070684_100031361
246 Ga0068853_100015997
247 Ga0070693_100142994
248 Ga0070665_100018241
249 Ga0070665_100479048
250 Ga0068857_100186156
251 Ga0068854_100037839
252 Ga0068852_100023394
253 Ga0068859_100004702
254 Ga0068859_100159368
255 Ga0068864_100015353
256 Ga0068861_100059626
257 Ga0068863_100003928
258 Ga0068858_100279535
259 Ga0068862_100281507
260 Ga0081455_10034553
261 Ga0081455_10036459
262 Ga0075432_10000104
263 Ga0075428_100000278
264 Ga0075434_100046744
265 Ga0075436_100001686
266 Ga0097620_100004702
267 Ga0097620_100159357
268 Ga0075435_100014883
269 Ga0111539_10002941
270 Ga0111539_10090682
271 Ga0105245_10032718
272 Ga0105243_10000154
273 Ga0105241_10214926
274 Ga0105241_10238100
275 Ga0105242_10000053
276 Ga0105248_10001675
277 Ga0105248_10314690
278 Ga0105237_10080435
279 Ga0105249_10121738
280 Ga0157378_10521066
281 Ga0163162_10117059
282 Ga0157372_10041361
283 Ga0163163_10001549
284 Ga0182008_10033282
285 Ga0163161_10000442
286 Ga0207692_10032265
287 Ga0207710_10034070
288 Ga0207688_10001869
289 Ga0207688_10053688
290 Ga0207645_10157799
291 Ga0207657_10019700
292 Ga0207687_10178454
293 Ga0207700_10139868
294 Ga0207664_10127110
295 Ga0207706_10052126
296 Ga0207686_10000046
297 Ga0207709_10000041
298 Ga0207670_10013611
299 Ga0207665_10042216
300 Ga0207711_10100198
301 Ga0207689_10069363
302 Ga0207661_10041848
303 Ga0207668_10077639
304 Ga0207703_10338299
305 Ga0207639_10040146
306 Ga0207639_10186613
307 Ga0207678_10060199
308 Ga0207678_10095377
309 Ga0207708_10021711
310 Ga0207708_10146517
311 Ga0207708_10431822
312 Ga0207702_10390287
313 Ga0207648_10222111
314 Ga0207676_10174923
315 Ga0207675_100023002
316 Ga0207675_100092176
317 Ga0207428_10003528
318 Ga0268266_10113388
319 Ga0307511_10000088
320 Ga0307511_10000157
321 Ga0307511_10000279
322 Ga0307511_10002257
323 Ga0307512_10099844
324 Ga0307513_10074713
325 Ga0307513_10076784
326 Ga0307514_10051040
327 Ga0307507_10074990
328 Ga0395900_0102129
329 Ga0395900_0160974
330 Ga0436364_0246913
331 Ga0400485_14421
332 Ga0400486_06936
333 Ga0436365_0272644
334 Ga0439449_0000617
335 Ga0439459_0034222
336 Ga0466969_0000163
337 Ga0466969_0098742
338 Ga0466972_0012235
339 Ga0466972_0055400
340 Ga0466965_0009762
341 Ga0466965_0018955
342 Ga0466965_0113687
343 Ga0466966_0002246
344 Ga0466966_0032737
345 Ga0466966_0045279
346 Ga0466961_0003727
347 Ga0466961_0008975
348 Ga0466963_0231565
349 Ga0466964_0000282
350 Ga0466968_0001049
351 Ga0466970_0000269
352 Ga0466970_0002534
353 Ga0466970_0052388
354 Ga0466970_0102602
355 Ga0466957_0001408
356 Ga0466957_0065283
357 Ga0466960_0001401
358 Ga0466960_0048181
359 Ga0466959_0000775
360 Ga0466958_0238188
361 Ga0466967_0032084
362 Ga0466967_0049687
363 Ga0466967_0367718
364 Ga0495592_0048449
365 Ga0495629_0042851
366 Ga0495651_0001703
367 Ga0495651_0025765
368 Ga0495594_0001039
369 Ga0495594_0051311
370 Ga0495608_0061594
371 Ga0495618_0007256
372 Ga0495628_0007832
373 Ga0495628_0022745
374 Ga0495652_0002225
375 Ga0495645_0088429
376 Ga0495645_0098387
377 Ga0495622_0003186
378 Ga0495668_0001135
379 Ga0495635_0004654
380 Ga0495635_0045646
381 Ga0495657_0040166
382 Ga0495646_0001712
383 Ga0495589_0121212
384 Ga0495600_0049787
385 Ga0495600_0254030
386 Ga0495676_0002131
387 Ga0495687_009782
388 Ga0495679_004845
389 Ga0495602_0100872
390 Ga0495614_0070368
391 Ga0496102_0055591
392 Ga0496102_0117041
393 Ga0496102_0127379
394 Ga0496103_0067096
395 Ga0496104_0044457
396 Ga0496105_0102351
397 Ga0496112_0004553
398 Ga0496112_0063820
399 Ga0496113_0340058
400 Ga0501047_0000236
401 Ga0501044_0004200
402 nmdc:mga06r32_460004_c1
403 nmdc:mga08y16_31613_c1
404 nmdc:mga08y16_72422_c1
405 nmdc:mga0n895_16597_c1
406 nmdc:mga0rr50_22243_c1
407 nmdc:mga08x19_4321_c1
408 nmdc:mga0a205_5990_c1
409 Ga0495601_0007463
410 Ga0495601_0008258
411 Ga0495612_0004455
412 Ga0495619_0110590
413 Ga0500560_000822
414 Ga0587106_012389
415 Ga0466962_0020185
416 3006493625
417 2537899063
418 2559423401
419 2559426688
420 2559432469
421 2616903425
422 2650899289
423 2753071786
424 2776372829
425 2863074065
426 2870724957
427 2870783485
428 2870787055
429 2912716777
430 2912723849
431 2912726487
432 2915358362
433 2917744507
434 2919395849
435 2920883586
436 3003000671
437 3006491696
438 8003871063
439 8008576559
440 8008577672
441 8019648030
442 8047719042
443 8054478125
444 8056836427

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02423

OCD_Mu_crystall

Ornithine cyclodeaminase/mu-crystallin family

39

352

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
6t3e-assembly1.cif.gz_A structure of thermococcus litoralis delta(1)-pyrroline-2-carboxylate reductase in complex with nadh and l-proline 0.8992 22 345
6t3e-assembly1.cif.gz_A structure of thermococcus litoralis delta(1)-pyrroline-2-carboxylate reductase in complex with nadh and l-proline 0.8965 22 345
1omo-assembly1.cif.gz_B alanine dehydrogenase dimer w/bound nad (archaeal) 0.8935 21 348
1omo-assembly1.cif.gz_B alanine dehydrogenase dimer w/bound nad (archaeal) 0.8882 21 348
4mp6-assembly1.cif.gz_A staphyloferrin b precursor biosynthetic enzyme sbnb bound to citrate and nad+ 0.8837 22 348
ID Description Score Start End Superfamily
af_Q2G1N2_2_134_3.30.1780.10 Alpha Beta;2-Layer Sandwich;ornithine cyclodeaminase, domain 1;ornithine cyclodeaminase, domain 1 0.8979 19 145 3.30.1780.10
af_Q9HDZ0_133_310_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8754 155 319 3.40.50.720
af_I1NGY5_23_180_3.30.1780.10 Alpha Beta;2-Layer Sandwich;ornithine cyclodeaminase, domain 1;ornithine cyclodeaminase, domain 1 0.8581 25 185 3.30.1780.10
af_Q54CJ8_2_182_3.30.1780.10 Alpha Beta;2-Layer Sandwich;ornithine cyclodeaminase, domain 1;ornithine cyclodeaminase, domain 1 0.8545 24 194 3.30.1780.10
af_Q14894_5_131_3.30.1780.10 Alpha Beta;2-Layer Sandwich;ornithine cyclodeaminase, domain 1;ornithine cyclodeaminase, domain 1 0.8542 23 146 3.30.1780.10
ID Description Score Start End GO Terms
AF-W1YCL0-F1-model_v4 Ornithine cyclodeaminase/mu-crystallin family protein 0.9656 26 141
AF-A0A1G8BJQ9-F1-model_v4 Ornithine cyclodeaminase 0.9649 17 356 GO:0005737
GO:0016639
GO:0019290
AF-A0A1G8BJQ9-F1-model_v4 Ornithine cyclodeaminase 0.9621 17 356 GO:0005737
GO:0016639
GO:0019290
AF-A0A1C5J3F6-F1-model_v4 Ornithine cyclodeaminase 0.962 17 356 GO:0005737
GO:0016639
GO:0019290
AF-A0A6G4YEB4-F1-model_v4 deleted 0.9618 22 145

Map