F334479

General Info

Members Datasets Scaffolds Average Seq Length
222 175 444 341

Family's Representative Sequence

Representative Sequence 3300013308|Ga0157375_10021986|Ga0157375_100219862
Length 389
Sequence MISVMATLFRAWNQRQPLNVMLMRPSRPVRKPKLSETTWVGYTLPMTSPVDARKRRNGSSTTIADIAEQTGVSVPTVSKVINGRADVSPETRRRVEAAILENGYKRSDRAQRASPILELIFHELDSEWALEIVRGVERVAGRNHMAVVLSEMQGRRTPGRGWIESALARRPAGVIAVFSDLSESMRGQLKTRGIPLVVIDPTGEPAHDTPSIGATNWNGGLTATRHLLGLGHKRIAVIAGPEDILCSRARLDGYRAAMDAAGVEIDPTLISHGRFQVEEGIERGRALLQRKDRPTAIFAGDDLQALGVYQAARELRLHIPEDLSIIGFDDLPAAQWVGPPLTTIRQPLVDMAVTASELVLALARGERPAQTRIELATELIVRESTAPPA

Samples

Sample ID Description Type Environment
1 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
48 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
80 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
81 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
82 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
83 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
84 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
85 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
86 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
87 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
88 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
89 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
90 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
93 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
94 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
95 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
96 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
97 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
98 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
99 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
100 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
101 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
102 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
103 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
104 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
105 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
106 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
107 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
108 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
109 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
110 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
111 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
112 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
120 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
121 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
122 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
123 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
124 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
125 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
126 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
127 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
128 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
129 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
130 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
131 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
132 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
133 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
134 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
135 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
136 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
137 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
139 2523533628 Maridesulfovibrio zosterae DSM 11974 Isolate Rhizosphere
140 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
141 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
142 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
143 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
144 2751185734 Saccharothrix sp. NRRL B-16314 Isolate Rhizosphere
145 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
146 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
147 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
148 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
149 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
150 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
151 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
152 2858882152 Micromonospora noduli MED15 Isolate Nodule
153 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
154 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
155 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
156 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
157 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
158 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
159 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
160 2870721527 Saccharothrix ecbatanensis DSM 45486 Isolate Rhizosphere
161 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
162 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
163 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
164 2891562705 Microbispora tritici MT50 Isolate Unclassified
165 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
166 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
167 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
168 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
169 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
170 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
171 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
172 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
173 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
174 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
175 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.98
Metatranscriptomes 0.45
Isolates 17.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.35
Nodule 2.25
Rhizoplane 7.66
Rhizosphere 78.38
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157375_10021986 3300013308 Bacteria 5863
2 JGI25406J46586_10009300 3300003203 Bacteria 4403
3 Ga0070658_10173723 3300005327 Bacteria 1811
4 Ga0070683_100015567 3300005329 Bacteria 6685
5 Ga0068869_100175084 3300005334 Bacteria 1679
6 Ga0068868_100077243 3300005338 Bacteria 2663
7 Ga0070661_100012588 3300005344 Bacteria 5921
8 Ga0070675_100001925 3300005354 Bacteria 15354
9 Ga0070674_100007305 3300005356 Bacteria 6508
10 Ga0070674_100042959 3300005356 Bacteria 3073
11 Ga0070674_100096130 3300005356 Bacteria 2149
12 Ga0070673_100308775 3300005364 Bacteria 1395
13 Ga0070659_100065935 3300005366 Bacteria 2868
14 Ga0070714_100001413 3300005435 Bacteria 17421
15 Ga0070713_100149828 3300005436 Bacteria 2074
16 Ga0070700_100232895 3300005441 Bacteria 1312
17 Ga0070694_100112530 3300005444 Bacteria 1941
18 Ga0070663_100072718 3300005455 Bacteria 2506
19 Ga0070678_100044007 3300005456 Bacteria 3185
20 Ga0070678_100065169 3300005456 Bacteria 2703
21 Ga0070662_100006387 3300005457 Bacteria 7595
22 Ga0070662_100033451 3300005457 Bacteria 3620
23 Ga0068853_100208393 3300005539 Bacteria 1781
24 Ga0070672_100153499 3300005543 Bacteria 1906
25 Ga0070696_100043917 3300005546 Bacteria 3093
26 Ga0068855_100014898 3300005563 Bacteria 9366
27 Ga0070664_100000941 3300005564 Bacteria 22756
28 Ga0068854_100002524 3300005578 Bacteria 11332
29 Ga0070702_100065698 3300005615 Bacteria 2126
30 Ga0068852_100053601 3300005616 Bacteria 3473
31 Ga0068859_100292778 3300005617 Bacteria 1721
32 Ga0068859_100692162 3300005617 Bacteria 1110
33 Ga0068851_10137203 3300005834 Bacteria 1327
34 Ga0068858_100098201 3300005842 Bacteria 2730
35 Ga0081539_10000456 3300005985 Bacteria 86722
36 Ga0070717_10004786 3300006028 Bacteria 9845
37 Ga0070717_10299272 3300006028 Bacteria 1430
38 Ga0097620_100292790 3300006931 Bacteria 1721
39 Ga0097620_100692199 3300006931 Bacteria 1110
40 Ga0105240_10006599 3300009093 Bacteria 17034
41 Ga0105240_10037467 3300009093 Bacteria 6232
42 Ga0111539_10007095 3300009094 Bacteria 14362
43 Ga0105245_10033678 3300009098 Bacteria 4541
44 Ga0105243_10431604 3300009148 Bacteria 1232
45 Ga0105241_10014697 3300009174 Bacteria 5729
46 Ga0105242_10185529 3300009176 Bacteria 1838
47 Ga0105237_10069957 3300009545 Bacteria 3505
48 Ga0105238_10003877 3300009551 Bacteria 14850
49 Ga0105239_10000498 3300010375 Bacteria 56798
50 Ga0105239_10052404 3300010375 Bacteria 4475
51 Ga0105239_10585278 3300010375 Bacteria 1272
52 Ga0157374_10162533 3300013296 Bacteria 2175
53 Ga0163162_10103115 3300013306 Bacteria 2946
54 Ga0157380_10013324 3300014326 Bacteria 5992
55 Ga0157377_10038723 3300014745 Bacteria 2634
56 Ga0157377_10057802 3300014745 Bacteria 2207
57 Ga0157379_10015049 3300014968 Bacteria 6785
58 Ga0163161_10010643 3300017792 Bacteria 6371
59 Ga0224712_10033466 3300022467 Bacteria 1881
60 Ga0207688_10020915 3300025901 Bacteria 3572
61 Ga0207647_10014649 3300025904 Bacteria 5402
62 Ga0207643_10027344 3300025908 Bacteria 3162
63 Ga0207654_10010375 3300025911 Bacteria 4743
64 Ga0207695_10004988 3300025913 Bacteria 17855
65 Ga0207695_10007472 3300025913 Bacteria 13885
66 Ga0207671_10002360 3300025914 Bacteria 20315
67 Ga0207649_10005263 3300025920 Bacteria 6996
68 Ga0207694_10029624 3300025924 Bacteria 4177
69 Ga0207659_10043606 3300025926 Bacteria 3151
70 Ga0207687_10121497 3300025927 Bacteria 1954
71 Ga0207700_10202650 3300025928 Bacteria 1673
72 Ga0207664_10000800 3300025929 Bacteria 21281
73 Ga0207690_10052195 3300025932 Bacteria 2738
74 Ga0207706_10012013 3300025933 Bacteria 7890
75 Ga0207669_10003955 3300025937 Bacteria 6467
76 Ga0207669_10130070 3300025937 Bacteria 1728
77 Ga0207711_10204075 3300025941 Bacteria 1804
78 Ga0207689_10019991 3300025942 Bacteria 5640
79 Ga0207661_10134338 3300025944 Bacteria 2123
80 Ga0207667_10017221 3300025949 Bacteria 8142
81 Ga0207640_10004160 3300025981 Bacteria 7825
82 Ga0207677_10003018 3300026023 Bacteria 8888
83 Ga0207677_10098934 3300026023 Bacteria 2141
84 Ga0207639_10061940 3300026041 Bacteria 2891
85 Ga0207639_10078785 3300026041 Bacteria 2602
86 Ga0207678_10049993 3300026067 Bacteria 3612
87 Ga0207708_10013155 3300026075 Bacteria 6175
88 Ga0207708_10132473 3300026075 Bacteria 1950
89 Ga0207641_10374433 3300026088 Bacteria 1362
90 Ga0207674_10042933 3300026116 Bacteria 4665
91 Ga0207698_10146892 3300026142 Bacteria 2040
92 Ga0268266_10119161 3300028379 Bacteria 2347
93 Ga0268265_10007596 3300028380 Bacteria 7313
94 Ga0307406_10087825 3300031901 Bacteria 2085
95 Ga0307407_10083543 3300031903 Bacteria 1938
96 Ga0307409_100239140 3300031995 Bacteria 1652
97 Ga0307411_10006267 3300032005 Bacteria 5936
98 Ga0307415_100102466 3300032126 Bacteria 2103
99 Ga0373942_0006824 3300035207 Bacteria 2637
100 Ga0395901_0350047 3300038443 Bacteria 1525
101 Ga0439439_0009154 3300041406 Bacteria 2350
102 Ga0466966_0015789 3300044684 Bacteria 4991
103 Ga0466961_0022712 3300044693 Bacteria 4035
104 Ga0466963_0037980 3300044694 Bacteria 3148
105 Ga0466963_0152914 3300044694 Bacteria 1603
106 Ga0466970_0027851 3300044765 Bacteria 2967
107 Ga0466959_0063807 3300045049 Bacteria 2674
108 Ga0451576_0183940 3300045051 Bacteria 2182
109 Ga0466958_0009144 3300045836 Bacteria 5508
110 Ga0466958_0027016 3300045836 Bacteria 3395
111 Ga0466958_0087777 3300045836 Bacteria 1921
112 Ga0466967_0161566 3300045976 Bacteria 2103
113 Ga0495651_0001313 3300046462 Bacteria 19261
114 Ga0495582_0182533 3300046473 Bacteria 1196
115 Ga0495608_0097684 3300046511 Bacteria 1896
116 Ga0495652_0013660 3300046529 Bacteria 7308
117 Ga0495645_0114504 3300046543 Bacteria 1905
118 Ga0495624_0202492 3300046690 Bacteria 1206
119 Ga0495604_0029403 3300047317 Bacteria 4371
120 Ga0495602_0281105 3300048088 Bacteria 1226
121 Ga0496102_0108230 3300048905 Bacteria 2589
122 Ga0496102_0170408 3300048905 Bacteria 2050
123 Ga0496103_0155489 3300048906 Bacteria 1466
124 Ga0496104_0099581 3300048907 Bacteria 2782
125 Ga0496104_0189492 3300048907 Bacteria 1968
126 Ga0496104_0466955 3300048907 Bacteria 1173
127 Ga0496108_0000008 3300048911 Bacteria 294619
128 Ga0496108_0013658 3300048911 Bacteria 6629
129 Ga0496108_0014209 3300048911 Bacteria 6496
130 Ga0496108_0211420 3300048911 Bacteria 1684
131 Ga0496108_0377890 3300048911 Bacteria 1237
132 Ga0496109_0024333 3300048912 Bacteria 5383
133 Ga0496110_0057817 3300048913 Bacteria 3415
134 Ga0496111_0005361 3300048914 Bacteria 8200
135 Ga0496112_0009046 3300048915 Bacteria 8946
136 Ga0496113_0002577 3300048916 Bacteria 10590
137 Ga0496115_0001076 3300048918 Bacteria 19791
138 Ga0501031_0154642 3300049568 Bacteria 1499
139 Ga0501036_0067198 3300049572 Bacteria 3033
140 Ga0501039_0048690 3300049575 Bacteria 3276
141 Ga0501040_0008755 3300049576 Bacteria 6575
142 Ga0501040_0076325 3300049576 Bacteria 2317
143 Ga0501041_0067337 3300049577 Bacteria 2195
144 Ga0501041_0092049 3300049577 Bacteria 1872
145 Ga0501042_0038605 3300049578 Bacteria 3390
146 Ga0501046_0099450 3300049580 Bacteria 2233
147 Ga0501067_0015016 3300049583 Bacteria 4285
148 Ga0501068_0223336 3300049584 Bacteria 1197
149 Ga0501071_0018436 3300049587 Bacteria 4832
150 Ga0501071_0092856 3300049587 Bacteria 2219
151 Ga0501072_0023605 3300049588 Bacteria 4777
152 Ga0501072_0040250 3300049588 Bacteria 3670
153 Ga0501072_0135002 3300049588 Bacteria 1967
154 Ga0501075_0042553 3300049591 Bacteria 3406
155 Ga0501075_0092597 3300049591 Bacteria 2294
156 Ga0501075_0147616 3300049591 Bacteria 1792
157 Ga0501075_0198681 3300049591 Bacteria 1529
158 Ga0501076_0020282 3300049592 Bacteria 5087
159 Ga0501076_0043469 3300049592 Bacteria 3541
160 Ga0501076_0203287 3300049592 Bacteria 1618
161 Ga0501076_0237979 3300049592 Bacteria 1489
162 Ga0501077_0035160 3300049593 Bacteria 3190
163 Ga0501077_0118913 3300049593 Bacteria 1674
164 Ga0501079_0240476 3300049741 Bacteria 1414
165 Ga0501080_0037315 3300049742 Bacteria 4538
166 Ga0501081_0029166 3300049743 Bacteria 3727
167 Ga0501081_0078296 3300049743 Bacteria 2311
168 Ga0501045_0004608 3300049824 Bacteria 9522
169 nmdc:mga08y16_195628_c1 3300050511 Bacteria 2096
170 Ga0495601_0011255 3300053077 Bacteria 5346
171 Ga0500644_0004843 3300053088 Bacteria 3383
172 Ga0500573_0009294 3300053140 Bacteria 5448
173 Ga0500616_0005345 3300053153 Bacteria 8749
174 Ga0501084_0004116 3300054114 Bacteria 11848
175 Ga0501084_0028171 3300054114 Bacteria 4694
176 Ga0501084_0081519 3300054114 Bacteria 2714
177 Ga0501082_0023721 3300060353 Bacteria 5289
178 Ga0501082_0304757 3300060353 Bacteria 1387
179 Ga0501082_0306001 3300060353 Bacteria 1384
180 Ga0466962_0029649 3300061719 Bacteria 2619
181 Ga0466962_0053416 3300061719 Bacteria 1931
182 Ga0530510_0196998 3300061734 Bacteria 1496
183 Ga0530510_0338327 3300061734 Bacteria 1130
184 2524003815 2523533628 Bacteria 4098242
185 2587732311 2585428058 Bacteria 6853932
186 2649119420 2648501241 Bacteria 5312320
187 2652973597 2651869818 Bacteria 5864031
188 2676483071 2675903059 Bacteria 8644972
189 2753071174 2751185734 Bacteria 8863695
190 2772646121 2772190715 Bacteria 6959372
191 2832008995 2832004796 Bacteria 6538017
192 2855670744 2855670206 Bacteria 7120389
193 2855677827 2855676851 Bacteria 7063653
194 2856742247 2856741275 Bacteria 8096094
195 2856746465 2856741275 Bacteria 8096094
196 2857289674 2857288857 Bacteria 7189066
197 2858849359 2858848962 Bacteria 6963058
198 2858882484 2858882152 Bacteria 7230291
199 2858894659 2858888857 Bacteria 7060307
200 2858895577 2858895516 Bacteria 7378898
201 2866066709 2866065130 Bacteria 6518152
202 2867511470 2867507094 Bacteria 6506033
203 2869051140 2869048445 Bacteria 6875584
204 2869066784 2869061728 Bacteria 7112407
205 2869069643 2869068681 Bacteria 7205615
206 2870722027 2870721527 Bacteria 9689237
207 2880490867 2880489317 Bacteria 7096270
208 2880501644 2880495981 Bacteria 7340502
209 2887481541 2887478801 Bacteria 8972725
210 2891567474 2891562705 Bacteria 8039471
211 2891568505 2891562705 Bacteria 8039471
212 2929223761 2929219909 Bacteria 6984360
213 2929230151 2929226422 Bacteria 7248583
214 2990088205 2990088156 Bacteria 6657676
215 2995466420 2995463766 Bacteria 8577691
216 8003830664 8003830390 Bacteria 6541657
217 8003872452 8003870546 Bacteria 7396674
218 8047713353 8047710418 Bacteria 11023148
219 8054705887 8054704163 Bacteria 7247792
220 8054728880 8054727385 Bacteria 7558670
221 8054734747 8054734606 Bacteria 6947278
222 8056056066 8056054917 Bacteria 5736694
223 Ga0157375_10021986
224 JGI25406J46586_10009300
225 Ga0070658_10173723
226 Ga0070683_100015567
227 Ga0068869_100175084
228 Ga0068868_100077243
229 Ga0070661_100012588
230 Ga0070675_100001925
231 Ga0070674_100007305
232 Ga0070674_100042959
233 Ga0070674_100096130
234 Ga0070673_100308775
235 Ga0070659_100065935
236 Ga0070714_100001413
237 Ga0070713_100149828
238 Ga0070700_100232895
239 Ga0070694_100112530
240 Ga0070663_100072718
241 Ga0070678_100044007
242 Ga0070678_100065169
243 Ga0070662_100006387
244 Ga0070662_100033451
245 Ga0068853_100208393
246 Ga0070672_100153499
247 Ga0070696_100043917
248 Ga0068855_100014898
249 Ga0070664_100000941
250 Ga0068854_100002524
251 Ga0070702_100065698
252 Ga0068852_100053601
253 Ga0068859_100292778
254 Ga0068859_100692162
255 Ga0068851_10137203
256 Ga0068858_100098201
257 Ga0081539_10000456
258 Ga0070717_10004786
259 Ga0070717_10299272
260 Ga0097620_100292790
261 Ga0097620_100692199
262 Ga0105240_10006599
263 Ga0105240_10037467
264 Ga0111539_10007095
265 Ga0105245_10033678
266 Ga0105243_10431604
267 Ga0105241_10014697
268 Ga0105242_10185529
269 Ga0105237_10069957
270 Ga0105238_10003877
271 Ga0105239_10000498
272 Ga0105239_10052404
273 Ga0105239_10585278
274 Ga0157374_10162533
275 Ga0163162_10103115
276 Ga0157380_10013324
277 Ga0157377_10038723
278 Ga0157377_10057802
279 Ga0157379_10015049
280 Ga0163161_10010643
281 Ga0224712_10033466
282 Ga0207688_10020915
283 Ga0207647_10014649
284 Ga0207643_10027344
285 Ga0207654_10010375
286 Ga0207695_10004988
287 Ga0207695_10007472
288 Ga0207671_10002360
289 Ga0207649_10005263
290 Ga0207694_10029624
291 Ga0207659_10043606
292 Ga0207687_10121497
293 Ga0207700_10202650
294 Ga0207664_10000800
295 Ga0207690_10052195
296 Ga0207706_10012013
297 Ga0207669_10003955
298 Ga0207669_10130070
299 Ga0207711_10204075
300 Ga0207689_10019991
301 Ga0207661_10134338
302 Ga0207667_10017221
303 Ga0207640_10004160
304 Ga0207677_10003018
305 Ga0207677_10098934
306 Ga0207639_10061940
307 Ga0207639_10078785
308 Ga0207678_10049993
309 Ga0207708_10013155
310 Ga0207708_10132473
311 Ga0207641_10374433
312 Ga0207674_10042933
313 Ga0207698_10146892
314 Ga0268266_10119161
315 Ga0268265_10007596
316 Ga0307406_10087825
317 Ga0307407_10083543
318 Ga0307409_100239140
319 Ga0307411_10006267
320 Ga0307415_100102466
321 Ga0373942_0006824
322 Ga0395901_0350047
323 Ga0439439_0009154
324 Ga0466966_0015789
325 Ga0466961_0022712
326 Ga0466963_0037980
327 Ga0466963_0152914
328 Ga0466970_0027851
329 Ga0466959_0063807
330 Ga0451576_0183940
331 Ga0466958_0009144
332 Ga0466958_0027016
333 Ga0466958_0087777
334 Ga0466967_0161566
335 Ga0495651_0001313
336 Ga0495582_0182533
337 Ga0495608_0097684
338 Ga0495652_0013660
339 Ga0495645_0114504
340 Ga0495624_0202492
341 Ga0495604_0029403
342 Ga0495602_0281105
343 Ga0496102_0108230
344 Ga0496102_0170408
345 Ga0496103_0155489
346 Ga0496104_0099581
347 Ga0496104_0189492
348 Ga0496104_0466955
349 Ga0496108_0000008
350 Ga0496108_0013658
351 Ga0496108_0014209
352 Ga0496108_0211420
353 Ga0496108_0377890
354 Ga0496109_0024333
355 Ga0496110_0057817
356 Ga0496111_0005361
357 Ga0496112_0009046
358 Ga0496113_0002577
359 Ga0496115_0001076
360 Ga0501031_0154642
361 Ga0501036_0067198
362 Ga0501039_0048690
363 Ga0501040_0008755
364 Ga0501040_0076325
365 Ga0501041_0067337
366 Ga0501041_0092049
367 Ga0501042_0038605
368 Ga0501046_0099450
369 Ga0501067_0015016
370 Ga0501068_0223336
371 Ga0501071_0018436
372 Ga0501071_0092856
373 Ga0501072_0023605
374 Ga0501072_0040250
375 Ga0501072_0135002
376 Ga0501075_0042553
377 Ga0501075_0092597
378 Ga0501075_0147616
379 Ga0501075_0198681
380 Ga0501076_0020282
381 Ga0501076_0043469
382 Ga0501076_0203287
383 Ga0501076_0237979
384 Ga0501077_0035160
385 Ga0501077_0118913
386 Ga0501079_0240476
387 Ga0501080_0037315
388 Ga0501081_0029166
389 Ga0501081_0078296
390 Ga0501045_0004608
391 nmdc:mga08y16_195628_c1
392 Ga0495601_0011255
393 Ga0500644_0004843
394 Ga0500573_0009294
395 Ga0500616_0005345
396 Ga0501084_0004116
397 Ga0501084_0028171
398 Ga0501084_0081519
399 Ga0501082_0023721
400 Ga0501082_0304757
401 Ga0501082_0306001
402 Ga0466962_0029649
403 Ga0466962_0053416
404 Ga0530510_0196998
405 Ga0530510_0338327
406 2524003815
407 2587732311
408 2649119420
409 2652973597
410 2676483071
411 2753071174
412 2772646121
413 2832008995
414 2855670744
415 2855677827
416 2856742247
417 2856746465
418 2857289674
419 2858849359
420 2858882484
421 2858894659
422 2858895577
423 2866066709
424 2867511470
425 2869051140
426 2869066784
427 2869069643
428 2870722027
429 2880490867
430 2880501644
431 2887481541
432 2891567474
433 2891568505
434 2929223761
435 2929230151
436 2990088205
437 2995466420
438 8003830664
439 8003872452
440 8047713353
441 8054705887
442 8054728880
443 8054734747
444 8056056066

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

62

107

0.97

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

114

382

0.94

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

224

385

0.94

PF01381

HTH_3

Helix-turn-helix

53

99

0.91

PF13407

Peripla_BP_4

Periplasmic binding protein domain

117

367

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4rk1-assembly1.cif.gz_A crystal structure of laci family transcriptional regulator from enterococcus faecium, target efi-512930, with bound ribose 0.9293 68 341
2bjc-assembly1.cif.gz_B nmr structure of a protein-dna complex of an altered specificity mutant of the lac repressor headpiece that mimics the gal repressor 0.9289 13 57
4rk1-assembly1.cif.gz_A crystal structure of laci family transcriptional regulator from enterococcus faecium, target efi-512930, with bound ribose 0.9227 68 341
3clk-assembly1.cif.gz_A crystal structure of a transcription regulator from lactobacillus plantarum 0.9124 67 338
4rk1-assembly3.cif.gz_F crystal structure of laci family transcriptional regulator from enterococcus faecium, target efi-512930, with bound ribose 0.9104 68 341
ID Description Score Start End Superfamily
1zvvA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9775 14 57 1.10.260.40
3oqnA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9741 14 57 1.10.260.40
3oqnC01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9722 13 57 1.10.260.40
3oqoC01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.968 13 57 1.10.260.40
1rzrA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9642 14 57 1.10.260.40
ID Description Score Start End GO Terms
AF-A0A4Q6DTD8-F1-model_v4 deleted 0.9641 183 337
AF-A0A5C8PIQ9-F1-model_v4 Substrate-binding domain-containing protein 0.9623 146 340 GO:0000976
GO:0003700
AF-A0A660QII2-F1-model_v4 LacI family transcriptional regulator 0.9616 164 337 GO:0000976
GO:0003700
AF-A0A7H4P3Q3-F1-model_v4 Regulatory protein 0.9579 161 338 GO:0000976
GO:0003700
AF-A0A0M8Z4Z9-F1-model_v4 LacI family transcriptional regulator 0.9559 167 320 GO:0000976
GO:0003700

Map