F333324

General Info

Members Datasets Scaffolds Average Seq Length
221 120 442 487

Family's Representative Sequence

Representative Sequence 3300009101|Ga0105247_10000144|Ga0105247_1000014410
Length 513
Sequence MIGSLRTAERTRGGLMNVEKSGTGRGAPAAEVNTSLVIGLTFVATLGGLLFGYDTAVISGAVTSIDAYFIDPLGLSETARSSLSGWTISSALLGCIIGAMVAGWVSTALGRRGGLMVAGLMFLLGSVGSAWPEFGFGPIGHMGPDALRPFIAYRILGGVGVGIASMLSPLYIAEISPSAIRGRLVSFNQLAIVGGILLVYFVNWFVASQGDDAWVKSTGWRYMLASEAIPSAILLILLMFVPDTPRWLVLRGRSPEALTQLRRLMSERDAREILADIERTMVRTSHKLLTFGLPVILIGIMISVFQQFVGINAVLYYAPLMFQNMGASTDTALLQTVVVGGANVIFTVIAIVTVDKWGRKPLLVTGAIIMAVAMIALGCLFNAKIVGLAALVAVVVYIAGFALSWGPVAWVMLSEMFPNAIKGKAMGIAVAAQWIANLLVSASFKVLDGNSVLNALFNHGFAYWIYGGMSVLAALFVLRYVPETKGRSLEAIQDLWGKPATAGATVAPSHPHS

Samples

Sample ID Description Type Environment
1 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
32 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
33 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
35 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
41 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
50 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
51 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
52 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
79 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
80 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
81 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
84 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
87 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
88 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
89 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
90 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
91 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
92 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
93 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
94 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
95 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
96 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
97 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
98 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
101 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
104 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
105 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
106 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
107 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
108 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
109 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
110 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
114 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
115 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
116 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
117 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
118 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
119 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
120 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.43
Nodule 0.45
Rhizoplane 3.17
Rhizosphere 80.54
Stem 0
Stem Tuber 0
Unclassified 1.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105247_10000144 3300009101 Bacteria 69830
2 JGI25406J46586_10002145 3300003203 Bacteria 9333
3 rootH1_10158072 3300003316 Bacteria 5015
4 rootL2_10122543 3300003322 Bacteria 3042
5 rootH1_10260041 3300003323 Bacteria 2299
6 Ga0070683_100023610 3300005329 Bacteria 5501
7 Ga0070670_100000001 3300005331 Bacteria 728788
8 Ga0070666_10008325 3300005335 Bacteria 6433
9 Ga0070680_100033690 3300005336 Bacteria 4130
10 Ga0070671_100000033 3300005355 Bacteria 105788
11 Ga0070671_100002336 3300005355 Bacteria 14646
12 Ga0070688_100009558 3300005365 Bacteria 5311
13 Ga0070667_100000405 3300005367 Bacteria 46253
14 Ga0070667_100005074 3300005367 Bacteria 11020
15 Ga0070681_10000259 3300005458 Bacteria 42095
16 Ga0070681_10011301 3300005458 Bacteria 8833
17 Ga0070681_10017016 3300005458 Bacteria 7266
18 Ga0070681_10022541 3300005458 Bacteria 6324
19 Ga0070681_10056239 3300005458 Bacteria 3916
20 Ga0070685_10000008 3300005466 Bacteria 166350
21 Ga0070679_100049648 3300005530 Bacteria 4179
22 Ga0070679_100060148 3300005530 Bacteria 3786
23 Ga0070679_100133564 3300005530 Bacteria 2463
24 Ga0070679_100151619 3300005530 Bacteria 2294
25 Ga0070679_100190071 3300005530 Bacteria 2023
26 Ga0070684_100025841 3300005535 Bacteria 4940
27 Ga0068853_100132390 3300005539 Bacteria 2234
28 Ga0070665_100001667 3300005548 Bacteria 25600
29 Ga0070665_100020832 3300005548 Bacteria 6589
30 Ga0070665_100029021 3300005548 Bacteria 5569
31 Ga0070665_100052264 3300005548 Bacteria 4099
32 Ga0070665_100110157 3300005548 Bacteria 2756
33 Ga0068855_100002914 3300005563 Bacteria 20938
34 Ga0068855_100003682 3300005563 Bacteria 18753
35 Ga0068855_100031086 3300005563 Bacteria 6379
36 Ga0070664_100214315 3300005564 Bacteria 1721
37 Ga0068854_100118386 3300005578 Bacteria 2007
38 Ga0068856_100090877 3300005614 Bacteria 3037
39 Ga0068859_100002382 3300005617 Bacteria 19151
40 Ga0068859_100009285 3300005617 Bacteria 9929
41 Ga0068859_100028974 3300005617 Bacteria 5555
42 Ga0068864_100000006 3300005618 Bacteria 393838
43 Ga0068864_100068175 3300005618 Bacteria 3090
44 Ga0068863_100022403 3300005841 Bacteria 6032
45 Ga0068858_100000100 3300005842 Bacteria 89377
46 Ga0068858_100002900 3300005842 Bacteria 17248
47 Ga0068858_100102595 3300005842 Bacteria 2668
48 Ga0068860_100000259 3300005843 Bacteria 77665
49 Ga0068860_100001209 3300005843 Bacteria 28185
50 Ga0068860_100008241 3300005843 Bacteria 10373
51 Ga0068862_100009806 3300005844 Bacteria 7914
52 Ga0068862_100020852 3300005844 Bacteria 5474
53 Ga0081455_10000311 3300005937 Bacteria 63941
54 Ga0081539_10000016 3300005985 Bacteria 381648
55 Ga0068871_100025673 3300006358 Bacteria 4587
56 Ga0075430_100079097 3300006846 Bacteria 2756
57 Ga0097620_100002382 3300006931 Bacteria 19151
58 Ga0097620_100009285 3300006931 Bacteria 9929
59 Ga0097620_100028976 3300006931 Bacteria 5555
60 Ga0099826_10103735 3300006948 Bacteria 1709
61 Ga0099794_10029344 3300007265 Unclassified 2562
62 Ga0105240_10000871 3300009093 Bacteria 54379
63 Ga0105240_10007684 3300009093 Bacteria 15607
64 Ga0105240_10018944 3300009093 Bacteria 9217
65 Ga0105240_10027563 3300009093 Bacteria 7436
66 Ga0105240_10033027 3300009093 Bacteria 6690
67 Ga0105240_10083641 3300009093 Bacteria 3915
68 Ga0105240_10141964 3300009093 Bacteria 2870
69 Ga0105240_10154392 3300009093 Bacteria 2732
70 Ga0105247_10004976 3300009101 Bacteria 8445
71 Ga0105247_10032190 3300009101 Bacteria 3186
72 Ga0105248_10009482 3300009177 Bacteria 10714
73 Ga0105248_10053314 3300009177 Bacteria 4538
74 Ga0105248_10219892 3300009177 Bacteria 2138
75 Ga0105237_10009708 3300009545 Bacteria 10297
76 Ga0105237_10092165 3300009545 Bacteria 3020
77 Ga0105238_10010656 3300009551 Bacteria 9233
78 Ga0105238_10015767 3300009551 Bacteria 7650
79 Ga0105238_10191815 3300009551 Bacteria 2019
80 Ga0105249_10013533 3300009553 Bacteria 7206
81 Ga0105249_10032855 3300009553 Bacteria 4696
82 Ga0105249_10048419 3300009553 Bacteria 3875
83 Ga0099796_10000040 3300010159 Bacteria 26327
84 Ga0105239_10019553 3300010375 Bacteria 7476
85 Ga0105239_10021859 3300010375 Bacteria 7052
86 Ga0157370_10043920 3300013104 Bacteria 4299
87 Ga0157369_10018936 3300013105 Bacteria 7713
88 Ga0157369_10276176 3300013105 Unclassified 1750
89 Ga0163162_10057708 3300013306 Bacteria 3910
90 Ga0157372_10112224 3300013307 Bacteria 3123
91 Ga0163163_10000926 3300014325 Bacteria 24867
92 Ga0163163_10022463 3300014325 Bacteria 5974
93 Ga0163163_10102095 3300014325 Bacteria 2891
94 Ga0157379_10003083 3300014968 Bacteria 14093
95 Ga0157379_10046525 3300014968 Bacteria 3869
96 Ga0157379_10075705 3300014968 Bacteria 3014
97 Ga0183365_10005 3300015684 Bacteria 249619
98 Ga0213872_10001635 3300021361 Bacteria 14188
99 Ga0213872_10003311 3300021361 Bacteria 8982
100 Ga0213872_10003946 3300021361 Bacteria 8027
101 Ga0213872_10018820 3300021361 Bacteria 3182
102 Ga0209233_1006184 3300025261 Bacteria 3878
103 Ga0207710_10000269 3300025900 Bacteria 42868
104 Ga0207710_10004386 3300025900 Bacteria 6163
105 Ga0207680_10030171 3300025903 Bacteria 3055
106 Ga0207707_10000465 3300025912 Bacteria 42077
107 Ga0207707_10003562 3300025912 Bacteria 13798
108 Ga0207707_10003676 3300025912 Bacteria 13603
109 Ga0207695_10016415 3300025913 Bacteria 8663
110 Ga0207695_10029010 3300025913 Bacteria 6123
111 Ga0207695_10061253 3300025913 Bacteria 3890
112 Ga0207695_10128521 3300025913 Bacteria 2493
113 Ga0207660_10009347 3300025917 Bacteria 6343
114 Ga0207660_10013090 3300025917 Bacteria 5432
115 Ga0207660_10018321 3300025917 Bacteria 4664
116 Ga0207652_10028435 3300025921 Bacteria 4664
117 Ga0207652_10102234 3300025921 Bacteria 2532
118 Ga0207652_10105848 3300025921 Bacteria 2489
119 Ga0207694_10028436 3300025924 Bacteria 4262
120 Ga0207650_10000002 3300025925 Bacteria 1439222
121 Ga0207644_10009775 3300025931 Bacteria 6306
122 Ga0207711_10000366 3300025941 Bacteria 47938
123 Ga0207711_10069041 3300025941 Bacteria 3062
124 Ga0207661_10020908 3300025944 Bacteria 4900
125 Ga0207667_10004623 3300025949 Bacteria 16891
126 Ga0207667_10005093 3300025949 Bacteria 16050
127 Ga0207712_10063538 3300025961 Bacteria 2628
128 Ga0207712_10143407 3300025961 Bacteria 1836
129 Ga0207658_10000001 3300025986 Bacteria 1439333
130 Ga0207658_10003925 3300025986 Bacteria 10452
131 Ga0207658_10211840 3300025986 Bacteria 1624
132 Ga0207703_10000916 3300026035 Bacteria 28723
133 Ga0207703_10018562 3300026035 Bacteria 5430
134 Ga0207639_10028151 3300026041 Bacteria 4101
135 Ga0207702_10123753 3300026078 Bacteria 2318
136 Ga0207641_10000222 3300026088 Bacteria 73444
137 Ga0207641_10000236 3300026088 Bacteria 71435
138 Ga0207641_10092298 3300026088 Bacteria 2651
139 Ga0207641_10147068 3300026088 Unclassified 2131
140 Ga0207676_10000001 3300026095 Bacteria 1439222
141 Ga0207676_10178732 3300026095 Bacteria 1856
142 Ga0207674_10109912 3300026116 Bacteria 2732
143 Ga0207675_100008837 3300026118 Bacteria 9453
144 Ga0207698_10143060 3300026142 Bacteria 2064
145 Ga0209179_1000018 3300027512 Bacteria 46139
146 Ga0268266_10000706 3300028379 Bacteria 45120
147 Ga0268266_10000783 3300028379 Bacteria 42459
148 Ga0268266_10000868 3300028379 Bacteria 39325
149 Ga0268266_10003126 3300028379 Bacteria 16846
150 Ga0268266_10014764 3300028379 Bacteria 6709
151 Ga0268266_10019311 3300028379 Bacteria 5806
152 Ga0268266_10084675 3300028379 Bacteria 2769
153 Ga0268265_10005134 3300028380 Bacteria 8966
154 Ga0268265_10013850 3300028380 Bacteria 5489
155 Ga0268264_10000004 3300028381 Bacteria 1116842
156 Ga0268264_10000145 3300028381 Bacteria 167262
157 Ga0307515_10135569 3300028794 Bacteria 2680
158 Ga0307511_10000013 3300030521 Bacteria 127687
159 Ga0307511_10006300 3300030521 Bacteria 11968
160 Ga0307509_10000002 3300031507 Bacteria 607551
161 Ga0307509_10128576 3300031507 Bacteria 2494
162 Ga0265314_10014491 3300031711 Bacteria 6303
163 Ga0307409_100253774 3300031995 Bacteria 1609
164 Ga0307411_10176280 3300032005 Bacteria 1618
165 Ga0307510_10000007 3300033180 Bacteria 558582
166 Ga0307510_10094705 3300033180 Bacteria 2810
167 Ga0436365_1700104 3300039437 Bacteria 2606
168 Ga0436361_0114864 3300039447 Bacteria 33465
169 Ga0436361_0222166 3300039447 Bacteria 1308
170 Ga0436361_0410424 3300039447 Bacteria 15407
171 Ga0436361_0478490 3300039447 Bacteria 50328
172 Ga0436361_0514157 3300039447 Bacteria 5025
173 Ga0436361_0769203 3300039447 Bacteria 5000
174 Ga0436361_1185031 3300039447 Bacteria 18849
175 Ga0451791_1603702 3300041451 Bacteria 5465
176 Ga0439449_0041536 3300042007 Bacteria 1710
177 Ga0466972_0027547 3300044658 Bacteria 2811
178 Ga0466964_0003801 3300044706 Bacteria 5537
179 Ga0466968_0023509 3300044735 Bacteria 2512
180 Ga0466957_0020500 3300044842 Bacteria 3890
181 Ga0466959_0006054 3300045049 Bacteria 8349
182 Ga0466959_0010204 3300045049 Bacteria 6707
183 Ga0466959_0088326 3300045049 Bacteria 2229
184 Ga0466958_0010179 3300045836 Bacteria 5259
185 Ga0495616_0001352 3300046513 Bacteria 17110
186 Ga0495625_0020751 3300046660 Bacteria 5065
187 Ga0495659_0049188 3300046664 Bacteria 1530
188 Ga0495613_0000404 3300046689 Bacteria 37030
189 Ga0496102_0002316 3300048905 Bacteria 16258
190 Ga0496102_0092714 3300048905 Bacteria 2798
191 Ga0496110_0210153 3300048913 Bacteria 1769
192 Ga0496112_0066072 3300048915 Bacteria 3569
193 Ga0496112_0086734 3300048915 Bacteria 3097
194 Ga0496115_0090291 3300048918 Bacteria 2503
195 Ga0496116_0001945 3300048919 Bacteria 22259
196 Ga0496117_0000038 3300048920 Bacteria 322781
197 Ga0496118_0000019 3300048921 Bacteria 489649
198 Ga0496118_0028444 3300048921 Bacteria 4706
199 Ga0496120_0003097 3300048923 Bacteria 15647
200 Ga0496121_0000405 3300048924 Bacteria 85880
201 Ga0496124_0032852 3300048927 Bacteria 4575
202 Ga0496125_0000211 3300048928 Bacteria 121051
203 Ga0496126_0002314 3300048929 Bacteria 26123
204 Ga0496126_0002971 3300048929 Bacteria 22020
205 Ga0496126_0145940 3300048929 Bacteria 2032
206 Ga0501034_0258095 3300049571 Bacteria 1686
207 Ga0501047_0069887 3300049581 Bacteria 3381
208 Ga0501047_0072930 3300049581 Unclassified 3305
209 nmdc:mga0qj67_87311_c1 3300050509 Bacteria 2503
210 Ga0500583_0035330 3300053092 Bacteria 2229
211 Ga0500583_0048876 3300053092 Bacteria 1954
212 Ga0500641_0022202 3300053096 Bacteria 2428
213 Ga0500588_0004151 3300053146 Bacteria 3117
214 Ga0500588_0006614 3300053146 Bacteria 2636
215 Ga0500616_0000018 3300053153 Bacteria 610976
216 Ga0500616_0020193 3300053153 Bacteria 3745
217 Ga0500622_0002186 3300053156 Bacteria 14457
218 Ga0500622_0003762 3300053156 Bacteria 9908
219 Ga0500637_0002400 3300053178 Bacteria 8322
220 Ga0500637_0002488 3300053178 Bacteria 8199
221 Ga0466962_0002422 3300061719 Bacteria 8849
222 Ga0105247_10000144
223 JGI25406J46586_10002145
224 rootH1_10158072
225 rootL2_10122543
226 rootH1_10260041
227 Ga0070683_100023610
228 Ga0070670_100000001
229 Ga0070666_10008325
230 Ga0070680_100033690
231 Ga0070671_100000033
232 Ga0070671_100002336
233 Ga0070688_100009558
234 Ga0070667_100000405
235 Ga0070667_100005074
236 Ga0070681_10000259
237 Ga0070681_10011301
238 Ga0070681_10017016
239 Ga0070681_10022541
240 Ga0070681_10056239
241 Ga0070685_10000008
242 Ga0070679_100049648
243 Ga0070679_100060148
244 Ga0070679_100133564
245 Ga0070679_100151619
246 Ga0070679_100190071
247 Ga0070684_100025841
248 Ga0068853_100132390
249 Ga0070665_100001667
250 Ga0070665_100020832
251 Ga0070665_100029021
252 Ga0070665_100052264
253 Ga0070665_100110157
254 Ga0068855_100002914
255 Ga0068855_100003682
256 Ga0068855_100031086
257 Ga0070664_100214315
258 Ga0068854_100118386
259 Ga0068856_100090877
260 Ga0068859_100002382
261 Ga0068859_100009285
262 Ga0068859_100028974
263 Ga0068864_100000006
264 Ga0068864_100068175
265 Ga0068863_100022403
266 Ga0068858_100000100
267 Ga0068858_100002900
268 Ga0068858_100102595
269 Ga0068860_100000259
270 Ga0068860_100001209
271 Ga0068860_100008241
272 Ga0068862_100009806
273 Ga0068862_100020852
274 Ga0081455_10000311
275 Ga0081539_10000016
276 Ga0068871_100025673
277 Ga0075430_100079097
278 Ga0097620_100002382
279 Ga0097620_100009285
280 Ga0097620_100028976
281 Ga0099826_10103735
282 Ga0099794_10029344
283 Ga0105240_10000871
284 Ga0105240_10007684
285 Ga0105240_10018944
286 Ga0105240_10027563
287 Ga0105240_10033027
288 Ga0105240_10083641
289 Ga0105240_10141964
290 Ga0105240_10154392
291 Ga0105247_10004976
292 Ga0105247_10032190
293 Ga0105248_10009482
294 Ga0105248_10053314
295 Ga0105248_10219892
296 Ga0105237_10009708
297 Ga0105237_10092165
298 Ga0105238_10010656
299 Ga0105238_10015767
300 Ga0105238_10191815
301 Ga0105249_10013533
302 Ga0105249_10032855
303 Ga0105249_10048419
304 Ga0099796_10000040
305 Ga0105239_10019553
306 Ga0105239_10021859
307 Ga0157370_10043920
308 Ga0157369_10018936
309 Ga0157369_10276176
310 Ga0163162_10057708
311 Ga0157372_10112224
312 Ga0163163_10000926
313 Ga0163163_10022463
314 Ga0163163_10102095
315 Ga0157379_10003083
316 Ga0157379_10046525
317 Ga0157379_10075705
318 Ga0183365_10005
319 Ga0213872_10001635
320 Ga0213872_10003311
321 Ga0213872_10003946
322 Ga0213872_10018820
323 Ga0209233_1006184
324 Ga0207710_10000269
325 Ga0207710_10004386
326 Ga0207680_10030171
327 Ga0207707_10000465
328 Ga0207707_10003562
329 Ga0207707_10003676
330 Ga0207695_10016415
331 Ga0207695_10029010
332 Ga0207695_10061253
333 Ga0207695_10128521
334 Ga0207660_10009347
335 Ga0207660_10013090
336 Ga0207660_10018321
337 Ga0207652_10028435
338 Ga0207652_10102234
339 Ga0207652_10105848
340 Ga0207694_10028436
341 Ga0207650_10000002
342 Ga0207644_10009775
343 Ga0207711_10000366
344 Ga0207711_10069041
345 Ga0207661_10020908
346 Ga0207667_10004623
347 Ga0207667_10005093
348 Ga0207712_10063538
349 Ga0207712_10143407
350 Ga0207658_10000001
351 Ga0207658_10003925
352 Ga0207658_10211840
353 Ga0207703_10000916
354 Ga0207703_10018562
355 Ga0207639_10028151
356 Ga0207702_10123753
357 Ga0207641_10000222
358 Ga0207641_10000236
359 Ga0207641_10092298
360 Ga0207641_10147068
361 Ga0207676_10000001
362 Ga0207676_10178732
363 Ga0207674_10109912
364 Ga0207675_100008837
365 Ga0207698_10143060
366 Ga0209179_1000018
367 Ga0268266_10000706
368 Ga0268266_10000783
369 Ga0268266_10000868
370 Ga0268266_10003126
371 Ga0268266_10014764
372 Ga0268266_10019311
373 Ga0268266_10084675
374 Ga0268265_10005134
375 Ga0268265_10013850
376 Ga0268264_10000004
377 Ga0268264_10000145
378 Ga0307515_10135569
379 Ga0307511_10000013
380 Ga0307511_10006300
381 Ga0307509_10000002
382 Ga0307509_10128576
383 Ga0265314_10014491
384 Ga0307409_100253774
385 Ga0307411_10176280
386 Ga0307510_10000007
387 Ga0307510_10094705
388 Ga0436365_1700104
389 Ga0436361_0114864
390 Ga0436361_0222166
391 Ga0436361_0410424
392 Ga0436361_0478490
393 Ga0436361_0514157
394 Ga0436361_0769203
395 Ga0436361_1185031
396 Ga0451791_1603702
397 Ga0439449_0041536
398 Ga0466972_0027547
399 Ga0466964_0003801
400 Ga0466968_0023509
401 Ga0466957_0020500
402 Ga0466959_0006054
403 Ga0466959_0010204
404 Ga0466959_0088326
405 Ga0466958_0010179
406 Ga0495616_0001352
407 Ga0495625_0020751
408 Ga0495659_0049188
409 Ga0495613_0000404
410 Ga0496102_0002316
411 Ga0496102_0092714
412 Ga0496110_0210153
413 Ga0496112_0066072
414 Ga0496112_0086734
415 Ga0496115_0090291
416 Ga0496116_0001945
417 Ga0496117_0000038
418 Ga0496118_0000019
419 Ga0496118_0028444
420 Ga0496120_0003097
421 Ga0496121_0000405
422 Ga0496124_0032852
423 Ga0496125_0000211
424 Ga0496126_0002314
425 Ga0496126_0002971
426 Ga0496126_0145940
427 Ga0501034_0258095
428 Ga0501047_0069887
429 Ga0501047_0072930
430 nmdc:mga0qj67_87311_c1
431 Ga0500583_0035330
432 Ga0500583_0048876
433 Ga0500641_0022202
434 Ga0500588_0004151
435 Ga0500588_0006614
436 Ga0500616_0000018
437 Ga0500616_0020193
438 Ga0500622_0002186
439 Ga0500622_0003762
440 Ga0500637_0002400
441 Ga0500637_0002488
442 Ga0466962_0002422

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00083

Sugar_tr

Sugar (and other) transporter

40

496

0.94

PF07690

MFS_1

Major Facilitator Superfamily

300

507

0.82

PF07690

MFS_1

Major Facilitator Superfamily

44

441

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gby-assembly1.cif.gz_A the structure of the mfs (major facilitator superfamily) proton:xylose symporter xyle bound to d-xylose 0.931 18 469
4ja3-assembly1.cif.gz_A partially occluded inward open conformation of the xylose transporter xyle from e. coli 0.8998 20 456
6n3i-assembly1.cif.gz_A crystal structure of a double trp xyle mutants (g58w/l315w) 0.8942 18 469
4ja3-assembly1.cif.gz_A partially occluded inward open conformation of the xylose transporter xyle from e. coli 0.8937 20 456
4ja3-assembly2.cif.gz_B partially occluded inward open conformation of the xylose transporter xyle from e. coli 0.888 18 461
ID Description Score Start End Superfamily
4gc0A01 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9587 16 246 1.20.1250.20
4ja3A01 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9506 20 215 1.20.1250.20
4ja3A03 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9488 268 456 1.20.1250.20
4ja3A03 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.938 268 456 1.20.1250.20
af_Q04162_301_544_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9265 267 469 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A379LSH6-F1-model_v4 D-xylose transporter 0.9736 268 469 GO:0016020
GO:0022857
AF-A0A2T9UMS9-F1-model_v4 D-xylose transporter XylE 0.9674 284 472 GO:0005886
GO:0015293
AF-A0A2X2HPC1-F1-model_v4 D-xylose-proton symporter 0.9665 264 471 GO:0005886
GO:0015293
AF-T0Z3I3-F1-model_v4 Xylose permease 0.9659 184 456 GO:0016020
GO:0022857
AF-T0Z3I3-F1-model_v4 Xylose permease 0.9625 184 456 GO:0016020
GO:0022857

Map