F332276

General Info

Members Datasets Scaffolds Average Seq Length
220 138 440 260

Family's Representative Sequence

Representative Sequence 3300014968|Ga0157379_10198221|Ga0157379_101982212
Length 305
Sequence MNSAPSLTPSAPLPPDTKSRTPTPAGRASTLIAGQFGTQTIVGHGSASANIQAIAGVVIKELYRRKDFYVLFILTALITLALGSAKFFGEDKSVRYLKEICLLLIWIAGLVIAITTTARQIPAERENRTIFPLLAKPVTRQHLILGKFFGCWLACGLALLVFYVFFGVISAAREHDWSLGAYFQILTLHWFLLGIVVAMTLLGSIVFAAPSSNSTITLLVAVGILLLGRHLNTLALQLATPAQQIVYAIYFAIPHLELFDVRDLIIHNLGTIPWLIWCGALGYAAAYSAIFLGAACLLFRRKPLN

Samples

Sample ID Description Type Environment
1 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
15 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
16 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
71 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
72 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
73 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
74 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
75 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
76 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
77 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
78 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
79 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
80 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
81 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
82 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
83 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
84 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
85 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
86 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
87 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
88 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
89 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
90 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
91 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
92 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
93 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
94 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
95 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
96 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
97 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
100 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
104 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
105 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
106 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
107 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
108 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
109 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
110 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
111 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
112 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
113 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
114 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
115 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
116 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
117 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
118 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
119 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
120 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
121 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
122 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
123 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
124 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
125 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
129 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
132 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
136 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
137 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
138 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.36
Nodule 0
Rhizoplane 0.91
Rhizosphere 97.27
Stem 0
Stem Tuber 0
Unclassified 20

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157379_10198221 3300014968 Bacteria 1815
2 rootH2_10013767 3300003320 Bacteria 13331
3 Ga0070658_10032931 3300005327 Bacteria 4168
4 Ga0070683_100522986 3300005329 Unclassified 1134
5 Ga0068869_100446167 3300005334 Unclassified 1072
6 Ga0068868_100435704 3300005338 Unclassified 1137
7 Ga0070689_100050230 3300005340 Bacteria 3222
8 Ga0070691_10025183 3300005341 Bacteria 2770
9 Ga0070687_100097013 3300005343 Unclassified 1642
10 Ga0070668_100218047 3300005347 Bacteria 1572
11 Ga0070688_100030871 3300005365 Bacteria 3219
12 Ga0070714_100005643 3300005435 Bacteria 9573
13 Ga0070713_100859456 3300005436 Unclassified 871
14 Ga0070701_10001142 3300005438 Bacteria 9693
15 Ga0070711_100330413 3300005439 Bacteria 1220
16 Ga0070705_100118507 3300005440 Bacteria 1705
17 Ga0070705_100275912 3300005440 Bacteria 1193
18 Ga0070681_10029271 3300005458 Bacteria 5530
19 Ga0070685_10065250 3300005466 Bacteria 2142
20 Ga0070679_100159657 3300005530 Bacteria 2229
21 Ga0070697_100437232 3300005536 Unclassified 1138
22 Ga0068853_100428958 3300005539 Bacteria 1241
23 Ga0070672_100456479 3300005543 Unclassified 1101
24 Ga0070686_100010094 3300005544 Bacteria 5314
25 Ga0070704_100487712 3300005549 Bacteria 1067
26 Ga0068855_100181417 3300005563 Bacteria 2380
27 Ga0068855_100242317 3300005563 Bacteria 2014
28 Ga0068855_100573163 3300005563 Bacteria 1220
29 Ga0068856_100684363 3300005614 Unclassified 1046
30 Ga0068859_100029092 3300005617 Bacteria 5545
31 Ga0068859_100635941 3300005617 Unclassified 1159
32 Ga0068864_100023435 3300005618 Bacteria 5183
33 Ga0068860_100432949 3300005843 Bacteria 1305
34 Ga0070717_10105887 3300006028 Bacteria 2394
35 Ga0097621_100021102 3300006237 Bacteria 5031
36 Ga0068871_100022336 3300006358 Bacteria 4877
37 Ga0075430_100078479 3300006846 Bacteria 2768
38 Ga0075431_100038696 3300006847 Bacteria 4912
39 Ga0075433_10225285 3300006852 Bacteria 1665
40 Ga0075434_100289387 3300006871 Bacteria 1658
41 Ga0097620_100029091 3300006931 Bacteria 5545
42 Ga0075435_100607830 3300007076 Unclassified 948
43 Ga0099794_10023838 3300007265 Bacteria 2804
44 Ga0105240_10006190 3300009093 Bacteria 17618
45 Ga0105240_10062605 3300009093 Bacteria 4631
46 Ga0105240_10167789 3300009093 Bacteria 2602
47 Ga0105240_10520372 3300009093 Bacteria 1320
48 Ga0105240_10526093 3300009093 Bacteria 1312
49 Ga0111539_10010040 3300009094 Bacteria 11934
50 Ga0111539_10167899 3300009094 Bacteria 2564
51 Ga0111539_10316410 3300009094 Bacteria 1816
52 Ga0105241_10050710 3300009174 Unclassified 3163
53 Ga0105242_10025112 3300009176 Bacteria 4711
54 Ga0105242_10138983 3300009176 Bacteria 2105
55 Ga0105242_10363705 3300009176 Unclassified 1340
56 Ga0105237_10223402 3300009545 Bacteria 1884
57 Ga0105238_10032113 3300009551 Bacteria 5343
58 Ga0105238_10111433 3300009551 Bacteria 2717
59 Ga0105249_10698864 3300009553 Unclassified 1074
60 Ga0157371_10317732 3300013102 Unclassified 1130
61 Ga0157370_10198750 3300013104 Unclassified 1860
62 Ga0157374_10082585 3300013296 Bacteria 3051
63 Ga0157374_10145061 3300013296 Archaea 2306
64 Ga0157374_10298303 3300013296 Bacteria 1594
65 Ga0157378_10134802 3300013297 Bacteria 2289
66 Ga0157378_10301320 3300013297 Unclassified 1551
67 Ga0157372_10036190 3300013307 Bacteria 5441
68 Ga0157372_11292105 3300013307 Bacteria 842
69 Ga0157375_10230419 3300013308 Viruses 2011
70 Ga0157375_10444790 3300013308 Bacteria 1461
71 Ga0163163_10000086 3300014325 Bacteria 102881
72 Ga0163163_10003129 3300014325 Bacteria 14027
73 Ga0157380_10136893 3300014326 Bacteria 2098
74 Ga0157376_10195262 3300014969 Unclassified 1858
75 Ga0157376_10605091 3300014969 Bacteria 1091
76 Ga0207707_10116125 3300025912 Bacteria 2339
77 Ga0207695_10014026 3300025913 Bacteria 9515
78 Ga0207695_10314575 3300025913 Bacteria 1456
79 Ga0207695_10378871 3300025913 Bacteria 1300
80 Ga0207694_10018341 3300025924 Bacteria 5290
81 Ga0207664_10010216 3300025929 Bacteria 6627
82 Ga0207670_10286529 3300025936 Bacteria 1285
83 Ga0207711_10320750 3300025941 Unclassified 1432
84 Ga0207661_10441248 3300025944 Unclassified 1185
85 Ga0207667_10587236 3300025949 Unclassified 1124
86 Ga0207667_10773573 3300025949 Bacteria 958
87 Ga0207668_10162055 3300025972 Bacteria 1744
88 Ga0207677_10165805 3300026023 Unclassified 1722
89 Ga0207639_10569003 3300026041 Unclassified 1042
90 Ga0207641_10528197 3300026088 Unclassified 1148
91 Ga0207676_10395736 3300026095 Unclassified 1290
92 Ga0207674_10059688 3300026116 Bacteria 3858
93 Ga0265337_1000108 3300028556 Bacteria 41858
94 Ga0265337_1005977 3300028556 Bacteria 4752
95 Ga0265337_1033232 3300028556 Unclassified 1522
96 Ga0265319_1000001 3300028563 Bacteria 549513
97 Ga0265319_1003103 3300028563 Bacteria 8783
98 Ga0265319_1050411 3300028563 Bacteria 1375
99 Ga0265334_10011080 3300028573 Bacteria 3801
100 Ga0265334_10081039 3300028573 Bacteria 1195
101 Ga0265318_10026184 3300028577 Unclassified 2298
102 Ga0265323_10000370 3300028653 Bacteria 25938
103 Ga0265323_10050203 3300028653 Bacteria 1483
104 Ga0265322_10034816 3300028654 Bacteria 1435
105 Ga0265336_10000385 3300028666 Bacteria 28195
106 Ga0265338_10000331 3300028800 Bacteria 85997
107 Ga0265338_10000580 3300028800 Bacteria 64333
108 Ga0265338_10001520 3300028800 Bacteria 37452
109 Ga0265338_10002144 3300028800 Bacteria 30308
110 Ga0265338_10003249 3300028800 Bacteria 23109
111 Ga0265338_10005630 3300028800 Bacteria 16264
112 Ga0265338_10009218 3300028800 Bacteria 11816
113 Ga0265338_10027083 3300028800 Bacteria 5761
114 Ga0265338_10049309 3300028800 Bacteria 3819
115 Ga0265338_10049403 3300028800 Bacteria 3813
116 Ga0265338_10052119 3300028800 Unclassified 3677
117 Ga0265338_10106052 3300028800 Bacteria 2276
118 Ga0265338_10137248 3300028800 Bacteria 1921
119 Ga0265338_10155828 3300028800 Bacteria 1769
120 Ga0265338_10348743 3300028800 Bacteria 1065
121 Ga0265324_10001172 3300029957 Bacteria 15618
122 Ga0265324_10006028 3300029957 Bacteria 5127
123 Ga0265324_10041902 3300029957 Bacteria 1583
124 Ga0265328_10015835 3300031239 Bacteria 2948
125 Ga0265320_10000540 3300031240 Bacteria 29222
126 Ga0265320_10008986 3300031240 Bacteria 6062
127 Ga0265320_10014003 3300031240 Bacteria 4591
128 Ga0265320_10130472 3300031240 Unclassified 1142
129 Ga0265325_10014041 3300031241 Bacteria 4541
130 Ga0265329_10000096 3300031242 Bacteria 41415
131 Ga0265339_10063226 3300031249 Unclassified 1988
132 Ga0265331_10064041 3300031250 Unclassified 1731
133 Ga0265327_10000581 3300031251 Bacteria 61702
134 Ga0265327_10055091 3300031251 Bacteria 2056
135 Ga0265327_10097667 3300031251 Bacteria 1422
136 Ga0265316_10010405 3300031344 Bacteria 8479
137 Ga0265316_10046834 3300031344 Bacteria 3423
138 Ga0265316_10056943 3300031344 Bacteria 3050
139 Ga0265316_10150431 3300031344 Bacteria 1744
140 Ga0265313_10002021 3300031595 Bacteria 18197
141 Ga0265313_10004751 3300031595 Bacteria 10242
142 Ga0265314_10000046 3300031711 Bacteria 199789
143 Ga0265314_10013758 3300031711 Bacteria 6522
144 Ga0265314_10043699 3300031711 Bacteria 3183
145 Ga0265342_10112624 3300031712 Bacteria 1539
146 Ga0265342_10141163 3300031712 Unclassified 1344
147 Ga0307410_10360205 3300031852 Bacteria 1165
148 Ga0373954_0013801 3300035118 Unclassified 3600
149 Ga0373954_0016008 3300035118 Bacteria 3354
150 Ga0373956_0086167 3300035119 Bacteria 1445
151 Ga0373960_0062080 3300035121 Unclassified 1136
152 Ga0316574_0044387 3300035398 Bacteria 2750
153 Ga0373933_0040027 3300035724 Bacteria 2759
154 Ga0373947_0134194 3300035725 Unclassified 1583
155 Ga0373937_0067222 3300036401 Bacteria 3302
156 Ga0373925_0208870 3300037068 Unclassified 1555
157 Ga0373925_0330186 3300037068 Unclassified 1235
158 Ga0395900_0082562 3300037418 Bacteria 3302
159 Ga0395905_0313236 3300037471 Unclassified 1458
160 Ga0451577_0000685 3300042876 Bacteria 53326
161 Ga0451577_0129471 3300042876 Bacteria 2264
162 Ga0451577_0319905 3300042876 Bacteria 1407
163 Ga0451577_0655833 3300042876 Bacteria 951
164 Ga0451577_0675506 3300042876 Unclassified 936
165 Ga0453684_0011030 3300044712 Bacteria 15266
166 Ga0453684_0034848 3300044712 Bacteria 6975
167 Ga0453684_0443629 3300044712 Unclassified 1446
168 Ga0451576_0257875 3300045051 Bacteria 1822
169 Ga0451576_0277934 3300045051 Unclassified 1751
170 Ga0451576_0383724 3300045051 Bacteria 1473
171 Ga0451576_0509857 3300045051 Bacteria 1264
172 Ga0495592_0000052 3300046454 Bacteria 109203
173 Ga0495641_0015920 3300046461 Bacteria 3985
174 Ga0495582_0028349 3300046473 Bacteria 3073
175 Ga0495582_0148318 3300046473 Bacteria 1331
176 Ga0495639_0067899 3300046475 Bacteria 1643
177 Ga0495662_0077341 3300046476 Unclassified 1616
178 Ga0495618_0007681 3300046514 Bacteria 6523
179 Ga0495618_0013032 3300046514 Bacteria 5053
180 Ga0495628_0000601 3300046516 Bacteria 33068
181 Ga0495630_0000453 3300046517 Bacteria 31046
182 Ga0495630_0002687 3300046517 Bacteria 12343
183 Ga0495630_0119664 3300046517 Bacteria 1998
184 Ga0495666_0020115 3300046526 Bacteria 3311
185 Ga0495652_0050084 3300046529 Bacteria 3573
186 Ga0495586_0000305 3300046535 Bacteria 31082
187 Ga0495586_0001463 3300046535 Bacteria 13020
188 Ga0495586_0002635 3300046535 Bacteria 9703
189 Ga0495645_0003248 3300046543 Bacteria 11036
190 Ga0495667_0039749 3300046559 Bacteria 3126
191 Ga0495658_0008958 3300046683 Bacteria 4975
192 Ga0495613_0046168 3300046689 Bacteria 3221
193 Ga0495674_0021736 3300047319 Bacteria 5929
194 Ga0495676_0006415 3300047321 Bacteria 10838
195 Ga0495675_0026673 3300047444 Bacteria 3684
196 Ga0495593_0277745 3300047673 Unclassified 838
197 Ga0496107_0158237 3300048910 Bacteria 1678
198 Ga0496115_0007326 3300048918 Bacteria 8116
199 Ga0501031_0000236 3300049568 Bacteria 31378
200 Ga0501033_0002130 3300049570 Bacteria 17127
201 Ga0501033_0017430 3300049570 Bacteria 5426
202 Ga0501033_0158599 3300049570 Bacteria 1629
203 Ga0501034_0190248 3300049571 Bacteria 2015
204 Ga0501038_0145662 3300049574 Bacteria 1934
205 Ga0501080_0166889 3300049742 Bacteria 2031
206 Ga0501035_0004378 3300049822 Bacteria 13408
207 Ga0501035_0007635 3300049822 Bacteria 10104
208 Ga0501044_0007890 3300049823 Bacteria 11702
209 Ga0501044_0192494 3300049823 Bacteria 2001
210 nmdc:mga0qj67_141837_c1 3300050509 Bacteria 1948
211 nmdc:mga08y16_22467_c1 3300050511 Bacteria 6658
212 nmdc:mga08y16_240590_c1 3300050511 Bacteria 1871
213 nmdc:mga08y16_320456_c1 3300050511 Bacteria 1596
214 nmdc:mga08y16_35845_c1 3300050511 Bacteria 5210
215 nmdc:mga0n895_387305_c1 3300050512 Bacteria 1414
216 nmdc:mga0a205_189642_c1 3300050515 Bacteria 1948
217 Ga0495601_0108909 3300053077 Unclassified 1793
218 Ga0500651_0182117 3300053093 Bacteria 1247
219 Ga0500650_0008840 3300053098 Unclassified 4009
220 Ga0500650_0115649 3300053098 Bacteria 1252
221 Ga0157379_10198221
222 rootH2_10013767
223 Ga0070658_10032931
224 Ga0070683_100522986
225 Ga0068869_100446167
226 Ga0068868_100435704
227 Ga0070689_100050230
228 Ga0070691_10025183
229 Ga0070687_100097013
230 Ga0070668_100218047
231 Ga0070688_100030871
232 Ga0070714_100005643
233 Ga0070713_100859456
234 Ga0070701_10001142
235 Ga0070711_100330413
236 Ga0070705_100118507
237 Ga0070705_100275912
238 Ga0070681_10029271
239 Ga0070685_10065250
240 Ga0070679_100159657
241 Ga0070697_100437232
242 Ga0068853_100428958
243 Ga0070672_100456479
244 Ga0070686_100010094
245 Ga0070704_100487712
246 Ga0068855_100181417
247 Ga0068855_100242317
248 Ga0068855_100573163
249 Ga0068856_100684363
250 Ga0068859_100029092
251 Ga0068859_100635941
252 Ga0068864_100023435
253 Ga0068860_100432949
254 Ga0070717_10105887
255 Ga0097621_100021102
256 Ga0068871_100022336
257 Ga0075430_100078479
258 Ga0075431_100038696
259 Ga0075433_10225285
260 Ga0075434_100289387
261 Ga0097620_100029091
262 Ga0075435_100607830
263 Ga0099794_10023838
264 Ga0105240_10006190
265 Ga0105240_10062605
266 Ga0105240_10167789
267 Ga0105240_10520372
268 Ga0105240_10526093
269 Ga0111539_10010040
270 Ga0111539_10167899
271 Ga0111539_10316410
272 Ga0105241_10050710
273 Ga0105242_10025112
274 Ga0105242_10138983
275 Ga0105242_10363705
276 Ga0105237_10223402
277 Ga0105238_10032113
278 Ga0105238_10111433
279 Ga0105249_10698864
280 Ga0157371_10317732
281 Ga0157370_10198750
282 Ga0157374_10082585
283 Ga0157374_10145061
284 Ga0157374_10298303
285 Ga0157378_10134802
286 Ga0157378_10301320
287 Ga0157372_10036190
288 Ga0157372_11292105
289 Ga0157375_10230419
290 Ga0157375_10444790
291 Ga0163163_10000086
292 Ga0163163_10003129
293 Ga0157380_10136893
294 Ga0157376_10195262
295 Ga0157376_10605091
296 Ga0207707_10116125
297 Ga0207695_10014026
298 Ga0207695_10314575
299 Ga0207695_10378871
300 Ga0207694_10018341
301 Ga0207664_10010216
302 Ga0207670_10286529
303 Ga0207711_10320750
304 Ga0207661_10441248
305 Ga0207667_10587236
306 Ga0207667_10773573
307 Ga0207668_10162055
308 Ga0207677_10165805
309 Ga0207639_10569003
310 Ga0207641_10528197
311 Ga0207676_10395736
312 Ga0207674_10059688
313 Ga0265337_1000108
314 Ga0265337_1005977
315 Ga0265337_1033232
316 Ga0265319_1000001
317 Ga0265319_1003103
318 Ga0265319_1050411
319 Ga0265334_10011080
320 Ga0265334_10081039
321 Ga0265318_10026184
322 Ga0265323_10000370
323 Ga0265323_10050203
324 Ga0265322_10034816
325 Ga0265336_10000385
326 Ga0265338_10000331
327 Ga0265338_10000580
328 Ga0265338_10001520
329 Ga0265338_10002144
330 Ga0265338_10003249
331 Ga0265338_10005630
332 Ga0265338_10009218
333 Ga0265338_10027083
334 Ga0265338_10049309
335 Ga0265338_10049403
336 Ga0265338_10052119
337 Ga0265338_10106052
338 Ga0265338_10137248
339 Ga0265338_10155828
340 Ga0265338_10348743
341 Ga0265324_10001172
342 Ga0265324_10006028
343 Ga0265324_10041902
344 Ga0265328_10015835
345 Ga0265320_10000540
346 Ga0265320_10008986
347 Ga0265320_10014003
348 Ga0265320_10130472
349 Ga0265325_10014041
350 Ga0265329_10000096
351 Ga0265339_10063226
352 Ga0265331_10064041
353 Ga0265327_10000581
354 Ga0265327_10055091
355 Ga0265327_10097667
356 Ga0265316_10010405
357 Ga0265316_10046834
358 Ga0265316_10056943
359 Ga0265316_10150431
360 Ga0265313_10002021
361 Ga0265313_10004751
362 Ga0265314_10000046
363 Ga0265314_10013758
364 Ga0265314_10043699
365 Ga0265342_10112624
366 Ga0265342_10141163
367 Ga0307410_10360205
368 Ga0373954_0013801
369 Ga0373954_0016008
370 Ga0373956_0086167
371 Ga0373960_0062080
372 Ga0316574_0044387
373 Ga0373933_0040027
374 Ga0373947_0134194
375 Ga0373937_0067222
376 Ga0373925_0208870
377 Ga0373925_0330186
378 Ga0395900_0082562
379 Ga0395905_0313236
380 Ga0451577_0000685
381 Ga0451577_0129471
382 Ga0451577_0319905
383 Ga0451577_0655833
384 Ga0451577_0675506
385 Ga0453684_0011030
386 Ga0453684_0034848
387 Ga0453684_0443629
388 Ga0451576_0257875
389 Ga0451576_0277934
390 Ga0451576_0383724
391 Ga0451576_0509857
392 Ga0495592_0000052
393 Ga0495641_0015920
394 Ga0495582_0028349
395 Ga0495582_0148318
396 Ga0495639_0067899
397 Ga0495662_0077341
398 Ga0495618_0007681
399 Ga0495618_0013032
400 Ga0495628_0000601
401 Ga0495630_0000453
402 Ga0495630_0002687
403 Ga0495630_0119664
404 Ga0495666_0020115
405 Ga0495652_0050084
406 Ga0495586_0000305
407 Ga0495586_0001463
408 Ga0495586_0002635
409 Ga0495645_0003248
410 Ga0495667_0039749
411 Ga0495658_0008958
412 Ga0495613_0046168
413 Ga0495674_0021736
414 Ga0495676_0006415
415 Ga0495675_0026673
416 Ga0495593_0277745
417 Ga0496107_0158237
418 Ga0496115_0007326
419 Ga0501031_0000236
420 Ga0501033_0002130
421 Ga0501033_0017430
422 Ga0501033_0158599
423 Ga0501034_0190248
424 Ga0501038_0145662
425 Ga0501080_0166889
426 Ga0501035_0004378
427 Ga0501035_0007635
428 Ga0501044_0007890
429 Ga0501044_0192494
430 nmdc:mga0qj67_141837_c1
431 nmdc:mga08y16_22467_c1
432 nmdc:mga08y16_240590_c1
433 nmdc:mga08y16_320456_c1
434 nmdc:mga08y16_35845_c1
435 nmdc:mga0n895_387305_c1
436 nmdc:mga0a205_189642_c1
437 Ga0495601_0108909
438 Ga0500651_0182117
439 Ga0500650_0008840
440 Ga0500650_0115649

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12730

ABC2_membrane_4

ABC-2 family transporter protein

60

228

0.71

PF12679

ABC2_membrane_2

ABC-2 family transporter protein

27

304

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
7znq-assembly1.cif.gz_y abc transporter complex nosdfyl in gdn 0.7336 2 256
7znq-assembly1.cif.gz_y abc transporter complex nosdfyl in gdn 0.7309 2 256
7o12-assembly1.cif.gz_E abc transporter nosdfy, amppnp-bound in gdn 0.7259 2 255
7o12-assembly1.cif.gz_E abc transporter nosdfy, amppnp-bound in gdn 0.7233 2 255
7osf-assembly1.cif.gz_E abc transporter complex nosdfyl, r-domain 1 0.7229 2 255
ID Description Score Start End Superfamily
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6361 49 251 3.40.1710.10
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6125 57 251 3.40.1710.10
af_Q9VMM9_322_706_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6052 49 251 3.40.1710.10
af_Q2G1V6_3_205_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.5033 9 252 1.10.3720.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.502 49 251 3.40.1710.10
ID Description Score Start End GO Terms
AF-A0A2V5X6B3-F1-model_v4 ABC transporter permease 0.9597 55 258 GO:0005886
GO:0140359
AF-A0A7V6ECG4-F1-model_v4 ABC transporter permease 0.9554 2 258 GO:0005886
GO:0140359
AF-A0A2E5EI26-F1-model_v4 ABC transporter permease 0.9536 1 258 GO:0005886
GO:0140359
AF-A0A2V5X6B3-F1-model_v4 ABC transporter permease 0.9506 55 258 GO:0005886
GO:0140359
AF-A0A2E5EI26-F1-model_v4 ABC transporter permease 0.95 1 258 GO:0005886
GO:0140359

Map