F329323

General Info

Members Datasets Scaffolds Average Seq Length
217 153 434 275

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2547132111|2547408926
Length 305
Sequence TPTARPAAPETTETATPADTAAPTAGRRRHDDAPDTMALFGRLAGLEDGPERDAVRDELVTAWLPMAHRIAGRFRDRGESIEDLRQVAALGLVKAIDRFDPERGAFESYAVPTITGEVKRHFRDRMWALRVPRRVQELRNKVRVARRELTQSPGSPEPSVADLAAHTGLTEEEVSAGMEALESFSTLSLDAELSAGDDGYSLADTLGAADASFDTVIDRESAKEGLRRLPERERAILYMRFFEDMTQSRIADRLGISQMHVSRLISRSCARVRDEALGQRTGHRATGRPVRTCGTTATREEREGC

Samples

Sample ID Description Type Environment
1 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
6 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
7 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
8 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
9 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
10 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
11 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
12 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
13 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
14 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
16 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
17 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
18 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
19 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
20 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
21 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
22 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
23 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
24 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
25 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
26 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
27 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
28 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
29 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
30 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
31 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
32 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
33 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
34 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
35 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
36 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
37 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
38 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
39 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
40 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
41 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
42 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
43 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
44 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
45 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
46 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
47 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
48 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
49 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
50 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
51 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
52 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
53 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
54 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
55 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
56 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
57 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
58 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
59 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
60 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
61 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
62 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
63 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
70 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
75 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
77 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
79 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
80 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
81 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
82 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
83 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
84 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
85 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
86 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
87 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
88 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
89 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
90 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
91 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
94 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
95 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
96 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
97 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
98 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
99 3300059628 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 160R_AD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
100 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
101 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
102 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
103 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
104 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
105 2643221647 Streptomyces sp. Root369 Isolate Unclassified
106 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
107 2643221714 Streptomyces sp. Root264 Isolate Unclassified
108 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
109 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
110 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
111 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
112 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
113 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
114 2808606448 Streptomyces sp. 193411 Isolate Unclassified
115 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
116 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
117 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
118 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
119 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
120 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
121 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
122 2867369537 Streptomyces sp. Z26 Isolate Unclassified
123 2867428634 Streptomyces sp. RP5T Isolate Unclassified
124 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
125 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
126 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
127 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
128 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
129 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
130 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
131 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
132 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
133 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
134 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
135 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
136 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
137 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
138 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
139 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
140 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
141 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
142 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
143 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
144 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
145 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
146 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
147 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
148 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
149 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
150 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
151 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
152 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
153 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 73.73
Metatranscriptomes 2.3
Isolates 23.96

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.69
Nodule 0.92
Rhizoplane 0.92
Rhizosphere 76.5
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10032916 3300001989 Bacteria 1779
2 rootH2_10103503 3300003320 Bacteria 1865
3 Ga0006562J51391_1027798 3300003578 Bacteria 3990
4 Ga0006562J51391_1070045 3300003578 Bacteria 2675
5 Ga0081455_10083021 3300005937 Bacteria 2619
6 Ga0081455_10249983 3300005937 Bacteria 1297
7 Ga0075363_100017362 3300006048 Bacteria 3568
8 Ga0075367_10012930 3300006178 Bacteria 4472
9 Ga0105239_10137960 3300010375 Bacteria 2716
10 Ga0182008_10002840 3300014497 Bacteria 10712
11 Ga0182007_10012086 3300015262 Bacteria 3333
12 Ga0183367_1003 3300015688 Bacteria 814276
13 Ga0206351_10488921 3300020077 Bacteria 1322
14 Ga0206350_11134288 3300020080 Bacteria 1889
15 Ga0209758_1011243 3300025297 Bacteria 5215
16 Ga0207647_10016815 3300025904 Bacteria 4985
17 Ga0307515_10092853 3300028794 Bacteria 3750
18 Ga0307511_10000237 3300030521 Bacteria 56458
19 Ga0307508_10015970 3300031616 Bacteria 6839
20 Ga0307514_10013499 3300031649 Bacteria 6773
21 Ga0307514_10089396 3300031649 Bacteria 2249
22 Ga0307514_10108889 3300031649 Bacteria 1969
23 Ga0307516_10002172 3300031730 Bacteria 26588
24 Ga0307516_10033191 3300031730 Bacteria 5194
25 Ga0307518_10062756 3300031838 Bacteria 2698
26 Ga0307411_10110084 3300032005 Bacteria 1969
27 Ga0395898_0032805 3300037466 Bacteria 5185
28 Ga0395898_0106718 3300037466 Bacteria 2686
29 Ga0395898_0154182 3300037466 Bacteria 2198
30 Ga0439436_0000590 3300041404 Bacteria 9618
31 Ga0439436_0030930 3300041404 Bacteria 1555
32 Ga0439436_0038049 3300041404 Bacteria 1384
33 Ga0451833_1336150 3300041491 Bacteria 1330
34 Ga0451853_0359081 3300041512 Bacteria 11865
35 Ga0439433_0004027 3300041999 Bacteria 3160
36 Ga0439448_0006306 3300042005 Bacteria 3407
37 Ga0439449_0003334 3300042007 Bacteria 6260
38 Ga0439449_0004624 3300042007 Bacteria 5317
39 Ga0439449_0081749 3300042007 Bacteria 1191
40 Ga0439455_0002981 3300042012 Bacteria 3175
41 Ga0439457_000168 3300042014 Bacteria 16904
42 Ga0439457_003478 3300042014 Bacteria 4281
43 Ga0439462_0056507 3300042015 Bacteria 1059
44 Ga0450920_022203 3300042122 Bacteria 1229
45 Ga0450894_003866 3300042131 Bacteria 1959
46 Ga0450899_001257 3300042135 Bacteria 2871
47 Ga0450903_000092 3300042138 Bacteria 18774
48 Ga0450906_003167 3300042145 Bacteria 3559
49 Ga0439458_0000382 3300042157 Bacteria 11143
50 Ga0439458_0043573 3300042157 Bacteria 1094
51 Ga0450908_009624 3300042184 Bacteria 1792
52 Ga0466969_0178021 3300044656 Bacteria 973
53 Ga0466972_0011217 3300044658 Bacteria 4498
54 Ga0466972_0023840 3300044658 Bacteria 3040
55 Ga0466965_0145559 3300044683 Bacteria 1236
56 Ga0466966_0003338 3300044684 Bacteria 10579
57 Ga0466961_0001106 3300044693 Bacteria 16587
58 Ga0466963_0000020 3300044694 Bacteria 55146
59 Ga0466963_0001086 3300044694 Bacteria 14185
60 Ga0466971_0175786 3300044719 Bacteria 1005
61 Ga0466970_0001682 3300044765 Bacteria 10626
62 Ga0466970_0009021 3300044765 Bacteria 5030
63 Ga0466957_0000434 3300044842 Bacteria 20610
64 Ga0466957_0080395 3300044842 Bacteria 2029
65 Ga0466960_0168794 3300044901 Bacteria 1180
66 Ga0466960_0237704 3300044901 Bacteria 1008
67 Ga0466959_0343879 3300045049 Bacteria 1018
68 Ga0466958_0003964 3300045836 Bacteria 7757
69 Ga0466967_0001593 3300045976 Bacteria 13358
70 Ga0466967_0033217 3300045976 Bacteria 4366
71 Ga0466967_0157141 3300045976 Bacteria 2131
72 Ga0495603_0013650 3300046455 Bacteria 4915
73 Ga0495639_0037763 3300046475 Bacteria 2166
74 Ga0495662_0044252 3300046476 Bacteria 2150
75 Ga0495594_0008582 3300046499 Bacteria 5266
76 Ga0495583_0037364 3300046506 Bacteria 2302
77 Ga0495625_0054340 3300046660 Bacteria 2861
78 Ga0495625_0171933 3300046660 Bacteria 1446
79 Ga0495588_0043899 3300046674 Bacteria 2288
80 Ga0495687_002005 3300047443 Bacteria 17256
81 Ga0495687_052047 3300047443 Bacteria 1734
82 Ga0495685_007549 3300047447 Bacteria 3593
83 Ga0496108_0189377 3300048911 Bacteria 1783
84 Ga0496109_0103756 3300048912 Bacteria 2639
85 Ga0501031_0036650 3300049568 Bacteria 3199
86 Ga0501032_0010325 3300049569 Bacteria 6736
87 Ga0501032_0013327 3300049569 Bacteria 5852
88 Ga0501032_0190618 3300049569 Bacteria 1340
89 Ga0501033_0014113 3300049570 Bacteria 6074
90 Ga0501033_0042029 3300049570 Bacteria 3409
91 Ga0501033_0076466 3300049570 Bacteria 2457
92 Ga0501033_0234799 3300049570 Bacteria 1302
93 Ga0501034_0003210 3300049571 Bacteria 18756
94 Ga0501034_0020692 3300049571 Bacteria 6718
95 Ga0501036_0000666 3300049572 Bacteria 25235
96 Ga0501036_0006001 3300049572 Bacteria 9849
97 Ga0501036_0088559 3300049572 Bacteria 2616
98 Ga0501036_0163414 3300049572 Bacteria 1877
99 Ga0501037_0195591 3300049573 Bacteria 1430
100 Ga0501037_0196992 3300049573 Bacteria 1424
101 Ga0501037_0281571 3300049573 Bacteria 1158
102 Ga0501038_0002908 3300049574 Bacteria 15965
103 Ga0501038_0016380 3300049574 Bacteria 6718
104 Ga0501038_0032062 3300049574 Bacteria 4640
105 Ga0501038_0057890 3300049574 Bacteria 3325
106 Ga0501039_0002139 3300049575 Bacteria 14626
107 Ga0501040_0046744 3300049576 Bacteria 2954
108 Ga0501041_0007772 3300049577 Bacteria 6296
109 Ga0501042_0005568 3300049578 Bacteria 8120
110 Ga0501042_0073507 3300049578 Bacteria 2445
111 Ga0501043_0001658 3300049579 Bacteria 19316
112 Ga0501043_0002314 3300049579 Bacteria 16128
113 Ga0501043_0120806 3300049579 Bacteria 2054
114 Ga0501043_0131137 3300049579 Bacteria 1964
115 Ga0501046_0025001 3300049580 Bacteria 4892
116 Ga0501046_0080094 3300049580 Bacteria 2524
117 Ga0501046_0221863 3300049580 Bacteria 1399
118 Ga0501047_0056104 3300049581 Bacteria 3808
119 Ga0501047_0064811 3300049581 Bacteria 3523
120 Ga0501047_0090353 3300049581 Bacteria 2939
121 Ga0501047_0126777 3300049581 Bacteria 2433
122 Ga0501047_0288295 3300049581 Bacteria 1485
123 Ga0501048_0001305 3300049582 Bacteria 18906
124 Ga0501048_0302863 3300049582 Bacteria 1137
125 Ga0501067_0014781 3300049583 Bacteria 4318
126 Ga0501068_0063318 3300049584 Bacteria 2250
127 Ga0501069_0072821 3300049585 Bacteria 1926
128 Ga0501070_0001803 3300049586 Bacteria 18887
129 Ga0501070_0034364 3300049586 Bacteria 4240
130 Ga0501070_0048142 3300049586 Bacteria 3541
131 Ga0501070_0245631 3300049586 Bacteria 1465
132 Ga0501071_0033156 3300049587 Bacteria 3670
133 Ga0501072_0079345 3300049588 Bacteria 2599
134 Ga0501073_0083353 3300049589 Bacteria 2225
135 Ga0501073_0329484 3300049589 Bacteria 1054
136 Ga0501073_0342480 3300049589 Bacteria 1032
137 Ga0501074_0000556 3300049590 Bacteria 23033
138 Ga0501076_0022914 3300049592 Bacteria 4805
139 Ga0501077_0053522 3300049593 Bacteria 2562
140 Ga0501235_004396 3300049669 Bacteria 3045
141 Ga0501080_0129300 3300049742 Bacteria 2338
142 Ga0501083_0028072 3300049744 Bacteria 3880
143 Ga0501035_0000356 3300049822 Bacteria 52673
144 Ga0501035_0002640 3300049822 Bacteria 17462
145 Ga0501035_0157002 3300049822 Bacteria 1971
146 Ga0501035_0354847 3300049822 Bacteria 1226
147 Ga0501035_0427800 3300049822 Bacteria 1098
148 Ga0501044_0002094 3300049823 Bacteria 22959
149 Ga0501044_0006930 3300049823 Bacteria 12475
150 Ga0501044_0023022 3300049823 Bacteria 6630
151 Ga0501044_0024910 3300049823 Bacteria 6345
152 Ga0501044_0146336 3300049823 Bacteria 2348
153 Ga0501044_0306826 3300049823 Bacteria 1514
154 Ga0501045_0030232 3300049824 Bacteria 3919
155 nmdc:mga03n38_25687_c1 3300050490 Bacteria 2423
156 nmdc:mga06z11_92884_c1 3300050494 Bacteria 1642
157 nmdc:mga07m45_77923_c1 3300050496 Bacteria 1890
158 Ga0500600_0048834 3300053149 Bacteria 2409
159 Ga0500600_0051291 3300053149 Bacteria 2340
160 Ga0501084_0042274 3300054114 Bacteria 3812
161 Ga0587122_006287 3300059628 Bacteria 1021
162 Ga0501082_0043567 3300060353 Bacteria 3869
163 Ga0466962_0000556 3300061719 Bacteria 16371
164 Ga0466962_0058965 3300061719 Bacteria 1832
165 Ga0530510_0069378 3300061734 Bacteria 2558
166 2547408926 2547132111 Bacteria 8013147
167 2585306077 2582581313 Bacteria 10042643
168 2644265060 2643221647 Bacteria 10741251
169 2644441744 2643221678 Bacteria 9540101
170 2644630851 2643221714 Bacteria 9015452
171 2784585974 2784132148 Bacteria 8627943
172 2785346999 2784746763 Bacteria 9783172
173 2785366161 2784746768 Bacteria 10036182
174 2786667132 2786546132 Bacteria 10419719
175 2808846768 2808606359 Bacteria 9866990
176 2808915814 2808606375 Bacteria 9466072
177 2808917391 2808606375 Bacteria 9466072
178 2809229476 2808606448 Bacteria 8656184
179 2811846519 2808606982 Bacteria 7791042
180 2812361622 2811994879 Bacteria 9313447
181 2812477157 2811994917 Bacteria 7761064
182 2852641670 2852635781 Bacteria 8251373
183 2862282303 2862281513 Bacteria 9621493
184 2862389970 2862382967 Bacteria 10317375
185 2862512862 2862507626 Bacteria 9425308
186 2867369707 2867369537 Bacteria 6501581
187 2867429835 2867428634 Bacteria 9590268
188 2873151960 2873151551 Bacteria 8625867
189 2877684354 2877676314 Bacteria 9512378
190 2912723741 2912715099 Bacteria 9460473
191 2912726843 2912723979 Bacteria 8557534
192 2919473788 2919468124 Bacteria 9133025
193 2946064543 2946064051 Bacteria 8957905
194 2946072966 2946072368 Bacteria 8999607
195 2947224489 2947224130 Bacteria 9938529
196 2954389693 2954380949 Bacteria 10050426
197 2954682219 2954673503 Bacteria 9685905
198 2954690705 2954682443 Bacteria 9862841
199 2954700536 2954691527 Bacteria 10720516
200 2954701692 2954701450 Bacteria 10834262
201 2954719209 2954711539 Bacteria 10867210
202 2954729181 2954721474 Bacteria 10456478
203 2954732630 2954731030 Bacteria 10243860
204 2954748080 2954740390 Bacteria 10229294
205 2954751509 2954749733 Bacteria 10366972
206 2954767205 2954759201 Bacteria 9358192
207 2990063308 2990059506 Bacteria 9321252
208 2990090563 2990088156 Bacteria 6657676
209 3006323413 3006321560 Bacteria 8247479
210 3006395116 3006393351 Bacteria 6615579
211 3006498660 3006493962 Bacteria 8825450
212 8008560139 8008558824 Bacteria 10610750
213 8008581467 8008574985 Bacteria 7815457
214 8023631883 8023623736 Bacteria 8593882
215 8033688535 8033684223 Bacteria 6906479
216 8048414123 8048406513 Bacteria 8936924
217 8056835019 8056829672 Bacteria 9045328
218 JGI24739J22299_10032916
219 rootH2_10103503
220 Ga0006562J51391_1027798
221 Ga0006562J51391_1070045
222 Ga0081455_10083021
223 Ga0081455_10249983
224 Ga0075363_100017362
225 Ga0075367_10012930
226 Ga0105239_10137960
227 Ga0182008_10002840
228 Ga0182007_10012086
229 Ga0183367_1003
230 Ga0206351_10488921
231 Ga0206350_11134288
232 Ga0209758_1011243
233 Ga0207647_10016815
234 Ga0307515_10092853
235 Ga0307511_10000237
236 Ga0307508_10015970
237 Ga0307514_10013499
238 Ga0307514_10089396
239 Ga0307514_10108889
240 Ga0307516_10002172
241 Ga0307516_10033191
242 Ga0307518_10062756
243 Ga0307411_10110084
244 Ga0395898_0032805
245 Ga0395898_0106718
246 Ga0395898_0154182
247 Ga0439436_0000590
248 Ga0439436_0030930
249 Ga0439436_0038049
250 Ga0451833_1336150
251 Ga0451853_0359081
252 Ga0439433_0004027
253 Ga0439448_0006306
254 Ga0439449_0003334
255 Ga0439449_0004624
256 Ga0439449_0081749
257 Ga0439455_0002981
258 Ga0439457_000168
259 Ga0439457_003478
260 Ga0439462_0056507
261 Ga0450920_022203
262 Ga0450894_003866
263 Ga0450899_001257
264 Ga0450903_000092
265 Ga0450906_003167
266 Ga0439458_0000382
267 Ga0439458_0043573
268 Ga0450908_009624
269 Ga0466969_0178021
270 Ga0466972_0011217
271 Ga0466972_0023840
272 Ga0466965_0145559
273 Ga0466966_0003338
274 Ga0466961_0001106
275 Ga0466963_0000020
276 Ga0466963_0001086
277 Ga0466971_0175786
278 Ga0466970_0001682
279 Ga0466970_0009021
280 Ga0466957_0000434
281 Ga0466957_0080395
282 Ga0466960_0168794
283 Ga0466960_0237704
284 Ga0466959_0343879
285 Ga0466958_0003964
286 Ga0466967_0001593
287 Ga0466967_0033217
288 Ga0466967_0157141
289 Ga0495603_0013650
290 Ga0495639_0037763
291 Ga0495662_0044252
292 Ga0495594_0008582
293 Ga0495583_0037364
294 Ga0495625_0054340
295 Ga0495625_0171933
296 Ga0495588_0043899
297 Ga0495687_002005
298 Ga0495687_052047
299 Ga0495685_007549
300 Ga0496108_0189377
301 Ga0496109_0103756
302 Ga0501031_0036650
303 Ga0501032_0010325
304 Ga0501032_0013327
305 Ga0501032_0190618
306 Ga0501033_0014113
307 Ga0501033_0042029
308 Ga0501033_0076466
309 Ga0501033_0234799
310 Ga0501034_0003210
311 Ga0501034_0020692
312 Ga0501036_0000666
313 Ga0501036_0006001
314 Ga0501036_0088559
315 Ga0501036_0163414
316 Ga0501037_0195591
317 Ga0501037_0196992
318 Ga0501037_0281571
319 Ga0501038_0002908
320 Ga0501038_0016380
321 Ga0501038_0032062
322 Ga0501038_0057890
323 Ga0501039_0002139
324 Ga0501040_0046744
325 Ga0501041_0007772
326 Ga0501042_0005568
327 Ga0501042_0073507
328 Ga0501043_0001658
329 Ga0501043_0002314
330 Ga0501043_0120806
331 Ga0501043_0131137
332 Ga0501046_0025001
333 Ga0501046_0080094
334 Ga0501046_0221863
335 Ga0501047_0056104
336 Ga0501047_0064811
337 Ga0501047_0090353
338 Ga0501047_0126777
339 Ga0501047_0288295
340 Ga0501048_0001305
341 Ga0501048_0302863
342 Ga0501067_0014781
343 Ga0501068_0063318
344 Ga0501069_0072821
345 Ga0501070_0001803
346 Ga0501070_0034364
347 Ga0501070_0048142
348 Ga0501070_0245631
349 Ga0501071_0033156
350 Ga0501072_0079345
351 Ga0501073_0083353
352 Ga0501073_0329484
353 Ga0501073_0342480
354 Ga0501074_0000556
355 Ga0501076_0022914
356 Ga0501077_0053522
357 Ga0501235_004396
358 Ga0501080_0129300
359 Ga0501083_0028072
360 Ga0501035_0000356
361 Ga0501035_0002640
362 Ga0501035_0157002
363 Ga0501035_0354847
364 Ga0501035_0427800
365 Ga0501044_0002094
366 Ga0501044_0006930
367 Ga0501044_0023022
368 Ga0501044_0024910
369 Ga0501044_0146336
370 Ga0501044_0306826
371 Ga0501045_0030232
372 nmdc:mga03n38_25687_c1
373 nmdc:mga06z11_92884_c1
374 nmdc:mga07m45_77923_c1
375 Ga0500600_0048834
376 Ga0500600_0051291
377 Ga0501084_0042274
378 Ga0587122_006287
379 Ga0501082_0043567
380 Ga0466962_0000556
381 Ga0466962_0058965
382 Ga0530510_0069378
383 2547408926
384 2585306077
385 2644265060
386 2644441744
387 2644630851
388 2784585974
389 2785346999
390 2785366161
391 2786667132
392 2808846768
393 2808915814
394 2808917391
395 2809229476
396 2811846519
397 2812361622
398 2812477157
399 2852641670
400 2862282303
401 2862389970
402 2862512862
403 2867369707
404 2867429835
405 2873151960
406 2877684354
407 2912723741
408 2912726843
409 2919473788
410 2946064543
411 2946072966
412 2947224489
413 2954389693
414 2954682219
415 2954690705
416 2954700536
417 2954701692
418 2954719209
419 2954729181
420 2954732630
421 2954748080
422 2954751509
423 2954767205
424 2990063308
425 2990090563
426 3006323413
427 3006395116
428 3006498660
429 8008560139
430 8008581467
431 8023631883
432 8033688535
433 8048414123
434 8056835019

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

59

128

0.98

PF04545

Sigma70_r4

Sigma-70, region 4

225

274

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

219

272

0.92

PF04539

Sigma70_r3

Sigma-70 region 3

137

211

0.84

Map