F329137

General Info

Members Datasets Scaffolds Average Seq Length
217 169 435 381

Family's Representative Sequence

Representative Sequence 3300046515|Ga0495620_0015243|Ga0495620_0015243_84_1334
Length 375
Sequence LNGRPISGASVGTRARGSKGILALLLGVLKADTKVSQAVVTIAPKNGTNGVATSGALKVSAAKGKLTEVTVKDGKGNAVDGAITGGGATWTPSTHLASATKYKVHAVAKDADGREAAEESAFTTLTPKNTFVGMFTPEDGSKVGVGMPFSVRFTRGITHPDAVEKAIKIKTEPAVDVQGHWFGNDRLDFRPEQYWKAGTKVTVTLNLDGVEGRPGVYGKQAKTVSFTIGRSQVSTVDAKTHKMVVKRDGPGYETWNGQMVISEQLRVTRMNGETVGYGGEYDIKDVPDAQRLTDSGTFIHGNYWGGDAFGNYNASHGCVGLRDVRGGGDRSAPAAWFFDHSITGDVVIVKNSHDKTVAPDNGLNGWNMSWSAWTA

Samples

Sample ID Description Type Environment
1 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
6 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
7 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
8 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
9 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
10 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
11 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
12 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
13 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
14 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
15 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
16 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
17 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
18 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
19 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
20 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
21 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
22 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
23 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
24 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
25 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
26 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
27 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
28 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
29 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
30 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
31 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
32 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
33 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
34 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
35 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
36 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
37 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
38 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
39 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
40 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
41 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
42 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
43 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
44 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
45 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
46 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
47 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
48 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
49 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
50 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
51 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
52 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
53 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
54 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
55 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
58 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
59 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
60 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
61 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
62 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
63 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
64 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
65 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
66 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
67 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
68 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
69 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
70 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
71 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
72 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
73 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
74 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
75 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
76 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
77 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
78 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
79 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
80 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
81 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
84 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
85 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
86 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
87 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
88 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
89 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
90 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
91 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
92 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
93 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
109 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
110 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
111 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
112 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
113 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
114 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
115 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
116 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
117 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
118 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
119 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
120 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
121 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
122 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
123 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
124 2643221647 Streptomyces sp. Root369 Isolate Unclassified
125 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
126 2643221714 Streptomyces sp. Root264 Isolate Unclassified
127 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
128 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
129 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
130 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
131 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
132 2808606448 Streptomyces sp. 193411 Isolate Unclassified
133 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
134 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
135 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
136 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
137 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
138 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
139 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
140 2862574272 Streptomyces sp. AcE210 Isolate Nodule
141 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
142 2867369537 Streptomyces sp. Z26 Isolate Unclassified
143 2867428634 Streptomyces sp. RP5T Isolate Unclassified
144 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
145 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
146 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
147 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
148 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
149 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
150 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
151 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
152 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
153 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
154 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
155 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
156 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
157 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
158 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
159 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
160 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
161 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
162 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
163 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
164 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
165 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
166 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
167 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
168 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
169 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 76.04
Metatranscriptomes 0.46
Isolates 23.5

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.45
Nodule 1.38
Rhizoplane 0
Rhizosphere 74.19
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495620_0015243 3300046515 Bacteria 3884
2 JGI24735J21928_10008681 3300002067 Bacteria 3280
3 rootH1_10001952 3300003316 Bacteria 20166
4 rootH1_10001952 3300003323 Bacteria 5646
5 Ga0006562J51391_1123763 3300003578 Bacteria 2620
6 Ga0068853_100055494 3300005539 Bacteria 3415
7 Ga0075365_10016836 3300006038 Bacteria 4459
8 Ga0075368_10022725 3300006042 Bacteria 2389
9 Ga0075367_10009777 3300006178 Bacteria 5024
10 Ga0105243_10055431 3300009148 Bacteria 3150
11 Ga0105246_10029252 3300011119 Bacteria 3626
12 Ga0182008_10004143 3300014497 Bacteria 8537
13 Ga0182007_10001654 3300015262 Bacteria 11800
14 Ga0182005_1005984 3300015265 Bacteria 3762
15 Ga0183367_1013 3300015688 Bacteria 334176
16 Ga0209758_1001752 3300025297 Bacteria 24130
17 Ga0207426_1005854 3300025302 Bacteria 5489
18 Ga0207639_10038431 3300026041 Bacteria 3560
19 Ga0209371_1008790 3300027312 Bacteria 3298
20 Ga0307515_10000995 3300028794 Bacteria 64758
21 Ga0268256_1007147 3300030500 Bacteria 4030
22 Ga0307511_10000067 3300030521 Bacteria 86517
23 Ga0307512_10021278 3300030522 Bacteria 5851
24 Ga0307513_10013427 3300031456 Bacteria 10052
25 Ga0307513_10020653 3300031456 Bacteria 7803
26 Ga0307509_10272276 3300031507 Bacteria 1460
27 Ga0307508_10015989 3300031616 Bacteria 6834
28 Ga0307508_10017383 3300031616 Bacteria 6537
29 Ga0307514_10034091 3300031649 Bacteria 4057
30 Ga0307516_10006032 3300031730 Bacteria 14327
31 Ga0307516_10016604 3300031730 Bacteria 7694
32 Ga0307507_10015025 3300033179 Bacteria 9156
33 Ga0307507_10017257 3300033179 Bacteria 8308
34 Ga0307510_10013435 3300033180 Bacteria 9711
35 Ga0395898_0004941 3300037466 Bacteria 14470
36 Ga0395905_0044895 3300037471 Bacteria 4146
37 Ga0439436_0001905 3300041404 Bacteria 6173
38 Ga0451837_0122734 3300041494 Bacteria 2689
39 Ga0451853_0350031 3300041512 Bacteria 7404
40 Ga0451853_1925316 3300041512 Bacteria 2182
41 Ga0439442_011024 3300042002 Bacteria 1836
42 Ga0439449_0006568 3300042007 Bacteria 4443
43 Ga0439449_0017346 3300042007 Bacteria 2703
44 Ga0439455_0011645 3300042012 Bacteria 1958
45 Ga0439457_000212 3300042014 Bacteria 15425
46 Ga0439457_000556 3300042014 Bacteria 10893
47 Ga0439462_0013461 3300042015 Bacteria 2096
48 Ga0450894_000081 3300042131 Bacteria 15483
49 Ga0450903_001534 3300042138 Bacteria 4301
50 Ga0450906_002690 3300042145 Bacteria 3866
51 Ga0439458_0000660 3300042157 Bacteria 8888
52 Ga0466969_0014848 3300044656 Bacteria 4090
53 Ga0466972_0001216 3300044658 Bacteria 12396
54 Ga0466972_0003628 3300044658 Bacteria 7671
55 Ga0466972_0022175 3300044658 Bacteria 3162
56 Ga0466972_0074450 3300044658 Bacteria 1618
57 Ga0466965_0002573 3300044683 Bacteria 7751
58 Ga0466965_0006551 3300044683 Bacteria 5300
59 Ga0466966_0005707 3300044684 Bacteria 8191
60 Ga0466966_0026717 3300044684 Bacteria 3767
61 Ga0466963_0006602 3300044694 Bacteria 6879
62 Ga0466963_0029360 3300044694 Bacteria 3539
63 Ga0466964_0004023 3300044706 Bacteria 5404
64 Ga0466964_0040595 3300044706 Bacteria 1880
65 Ga0466971_0017719 3300044719 Bacteria 3153
66 Ga0466971_0063557 3300044719 Bacteria 1671
67 Ga0466970_0016080 3300044765 Bacteria 3853
68 Ga0466970_0125298 3300044765 Bacteria 1408
69 Ga0466957_0003086 3300044842 Bacteria 9070
70 Ga0466960_0016350 3300044901 Bacteria 3216
71 Ga0466959_0023171 3300045049 Bacteria 4594
72 Ga0466959_0084561 3300045049 Bacteria 2284
73 Ga0466958_0032390 3300045836 Bacteria 3109
74 Ga0466967_0030786 3300045976 Bacteria 4507
75 Ga0495592_0013792 3300046454 Bacteria 6145
76 Ga0495603_0039460 3300046455 Bacteria 2828
77 Ga0495629_0009121 3300046459 Bacteria 7266
78 Ga0495629_0018802 3300046459 Bacteria 4938
79 Ga0495629_0023371 3300046459 Bacteria 4405
80 Ga0495651_0016140 3300046462 Bacteria 5783
81 Ga0495662_0001483 3300046476 Bacteria 11617
82 Ga0495662_0009088 3300046476 Bacteria 4877
83 Ga0495662_0056891 3300046476 Bacteria 1888
84 Ga0495664_0049889 3300046477 Bacteria 2484
85 Ga0495594_0034260 3300046499 Bacteria 2762
86 Ga0495594_0059181 3300046499 Bacteria 2118
87 Ga0495594_0076923 3300046499 Bacteria 1861
88 Ga0495607_0020306 3300046501 Bacteria 4203
89 Ga0495628_0063856 3300046516 Bacteria 2884
90 Ga0495652_0072044 3300046529 Bacteria 2881
91 Ga0495587_0001447 3300046536 Bacteria 15818
92 Ga0495634_0002506 3300046642 Bacteria 15227
93 Ga0495611_0007314 3300046648 Bacteria 4691
94 Ga0495611_0011242 3300046648 Bacteria 3794
95 Ga0495625_0009440 3300046660 Bacteria 8163
96 Ga0495635_0060062 3300046663 Bacteria 2613
97 Ga0495661_0042971 3300046665 Bacteria 2782
98 Ga0495588_0016057 3300046674 Bacteria 3614
99 Ga0495657_0021618 3300046675 Bacteria 4615
100 Ga0495657_0027989 3300046675 Bacteria 3968
101 Ga0495599_0059109 3300046678 Bacteria 2398
102 Ga0495646_0003777 3300046680 Bacteria 9470
103 Ga0495658_0022879 3300046683 Bacteria 3311
104 Ga0495613_0018675 3300046689 Bacteria 5170
105 Ga0495613_0070343 3300046689 Bacteria 2552
106 Ga0495613_0105271 3300046689 Bacteria 2036
107 Ga0495613_0183685 3300046689 Bacteria 1480
108 Ga0495671_0021956 3300046692 Bacteria 3347
109 Ga0495600_0061455 3300046809 Bacteria 2453
110 Ga0495581_0008514 3300047315 Bacteria 5946
111 Ga0495604_0003195 3300047317 Bacteria 13091
112 Ga0495636_0003853 3300047318 Bacteria 5850
113 Ga0495636_0066154 3300047318 Bacteria 1536
114 Ga0495676_0032209 3300047321 Bacteria 4428
115 Ga0495687_001860 3300047443 Bacteria 18379
116 Ga0495687_006137 3300047443 Bacteria 7452
117 Ga0495675_0007535 3300047444 Bacteria 6709
118 Ga0495685_009505 3300047447 Bacteria 3251
119 Ga0495681_0000532 3300047470 Bacteria 29171
120 Ga0495686_0028750 3300047472 Bacteria 3619
121 Ga0495593_0008049 3300047673 Bacteria 6132
122 Ga0495602_0068308 3300048088 Bacteria 3052
123 Ga0495614_0010585 3300048089 Bacteria 4065
124 Ga0495614_0015135 3300048089 Bacteria 3366
125 Ga0501031_0027413 3300049568 Bacteria 3714
126 Ga0501032_0030706 3300049569 Bacteria 3687
127 Ga0501032_0133282 3300049569 Bacteria 1638
128 Ga0501033_0001896 3300049570 Bacteria 18182
129 Ga0501033_0066313 3300049570 Bacteria 2654
130 Ga0501033_0106215 3300049570 Bacteria 2045
131 Ga0501034_0016944 3300049571 Bacteria 7471
132 Ga0501034_0024451 3300049571 Bacteria 6145
133 Ga0501034_0053732 3300049571 Bacteria 4056
134 Ga0501034_0144529 3300049571 Bacteria 2356
135 Ga0501036_0017724 3300049572 Bacteria 5961
136 Ga0501036_0040951 3300049572 Bacteria 3920
137 Ga0501036_0052940 3300049572 Bacteria 3437
138 Ga0501038_0012561 3300049574 Bacteria 7738
139 Ga0501038_0039256 3300049574 Bacteria 4141
140 Ga0501039_0039772 3300049575 Bacteria 3631
141 Ga0501039_0047844 3300049575 Bacteria 3306
142 Ga0501043_0002637 3300049579 Bacteria 15077
143 Ga0501043_0004479 3300049579 Bacteria 11345
144 Ga0501043_0030611 3300049579 Bacteria 4230
145 Ga0501046_0040461 3300049580 Bacteria 3725
146 Ga0501047_0007592 3300049581 Bacteria 10204
147 Ga0501047_0138632 3300049581 Bacteria 2311
148 Ga0501048_0033372 3300049582 Bacteria 3718
149 Ga0501070_0004180 3300049586 Bacteria 12429
150 Ga0501074_0003297 3300049590 Bacteria 11419
151 Ga0501035_0035204 3300049822 Bacteria 4544
152 Ga0501035_0049600 3300049822 Bacteria 3761
153 Ga0501035_0252981 3300049822 Bacteria 1495
154 Ga0501044_0001669 3300049823 Bacteria 26060
155 Ga0501044_0160099 3300049823 Bacteria 2228
156 Ga0501045_0141719 3300049824 Bacteria 1787
157 nmdc:mga0yw44_33768_c1 3300050492 Bacteria 2992
158 nmdc:mga04h51_5768_c1 3300050495 Bacteria 3172
159 nmdc:mga07m45_75141_c1 3300050496 Bacteria 1925
160 Ga0495619_0066057 3300053085 Bacteria 2414
161 Ga0500583_0090714 3300053092 Bacteria 1487
162 Ga0500640_015625 3300053095 Bacteria 3183
163 Ga0500560_002024 3300053107 Bacteria 3749
164 Ga0500573_0030101 3300053140 Bacteria 3131
165 Ga0500573_0076606 3300053140 Bacteria 1904
166 Ga0500624_001769 3300053157 Bacteria 3163
167 Ga0466962_0014872 3300061719 Bacteria 3750
168 2547411448 2547132111 Bacteria 8013147
169 2554256167 2554235005 Bacteria 6457341
170 2585310777 2582581313 Bacteria 10042643
171 2585317790 2582581314 Bacteria 11452267
172 2643943996 2643221587 Bacteria 7586415
173 2644269404 2643221647 Bacteria 10741251
174 2644434733 2643221677 Bacteria 7584031
175 2644632335 2643221714 Bacteria 9015452
176 2785371581 2784746768 Bacteria 10036182
177 2786672743 2786546132 Bacteria 10419719
178 2804847976 2802429296 Bacteria 7227771
179 2808844099 2808606359 Bacteria 9866990
180 2808913702 2808606375 Bacteria 9466072
181 2809234152 2808606448 Bacteria 8656184
182 2811844331 2808606982 Bacteria 7791042
183 2812355869 2811994879 Bacteria 9313447
184 2812478686 2811994917 Bacteria 7761064
185 2852639554 2852635781 Bacteria 8251373
186 2862186498 2862178590 Bacteria 8583590
187 2862284657 2862281513 Bacteria 9621493
188 2862392416 2862382967 Bacteria 10317375
189 2862577432 2862574272 Bacteria 10567477
190 2863408693 2863404153 Bacteria 9672205
191 2867373928 2867369537 Bacteria 6501581
192 2867432127 2867428634 Bacteria 9590268
193 2877679030 2877676314 Bacteria 9512378
194 2912730086 2912723979 Bacteria 8557534
195 2912762844 2912757875 Bacteria 7940295
196 2918506582 2918501144 Bacteria 8668083
197 2946069919 2946064051 Bacteria 8957905
198 2947226858 2947224130 Bacteria 9938529
199 2954005573 2954002825 Bacteria 9173742
200 2954383928 2954380949 Bacteria 10050426
201 2954679037 2954673503 Bacteria 9685905
202 2954685116 2954682443 Bacteria 9862841
203 2954694725 2954691527 Bacteria 10720516
204 2954709928 2954701450 Bacteria 10834262
205 2954714230 2954711539 Bacteria 10867210
206 2954724181 2954721474 Bacteria 10456478
207 2954737658 2954731030 Bacteria 10243860
208 2954743077 2954740390 Bacteria 10229294
209 2954756493 2954749733 Bacteria 10366972
210 2954762035 2954759201 Bacteria 9358192
211 2990065111 2990059506 Bacteria 9321252
212 3006394063 3006393351 Bacteria 6615579
213 3006496779 3006493962 Bacteria 8825450
214 8008562863 8008558824 Bacteria 10610750
215 8008577086 8008574985 Bacteria 7815457
216 8025536192 8025530807 Bacteria 8495698
217 8048130756 8048127548 Bacteria 11053136
218 8048413135 8048406513 Bacteria 8936924
219 Ga0495620_0015243
220 JGI24735J21928_10008681
221 rootH1_10001952
222 Ga0006562J51391_1123763
223 Ga0068853_100055494
224 Ga0075365_10016836
225 Ga0075368_10022725
226 Ga0075367_10009777
227 Ga0105243_10055431
228 Ga0105246_10029252
229 Ga0182008_10004143
230 Ga0182007_10001654
231 Ga0182005_1005984
232 Ga0183367_1013
233 Ga0209758_1001752
234 Ga0207426_1005854
235 Ga0207639_10038431
236 Ga0209371_1008790
237 Ga0307515_10000995
238 Ga0268256_1007147
239 Ga0307511_10000067
240 Ga0307512_10021278
241 Ga0307513_10013427
242 Ga0307513_10020653
243 Ga0307509_10272276
244 Ga0307508_10015989
245 Ga0307508_10017383
246 Ga0307514_10034091
247 Ga0307516_10006032
248 Ga0307516_10016604
249 Ga0307507_10015025
250 Ga0307507_10017257
251 Ga0307510_10013435
252 Ga0395898_0004941
253 Ga0395905_0044895
254 Ga0439436_0001905
255 Ga0451837_0122734
256 Ga0451853_0350031
257 Ga0451853_1925316
258 Ga0439442_011024
259 Ga0439449_0006568
260 Ga0439449_0017346
261 Ga0439455_0011645
262 Ga0439457_000212
263 Ga0439457_000556
264 Ga0439462_0013461
265 Ga0450894_000081
266 Ga0450903_001534
267 Ga0450906_002690
268 Ga0439458_0000660
269 Ga0466969_0014848
270 Ga0466972_0001216
271 Ga0466972_0003628
272 Ga0466972_0022175
273 Ga0466972_0074450
274 Ga0466965_0002573
275 Ga0466965_0006551
276 Ga0466966_0005707
277 Ga0466966_0026717
278 Ga0466963_0006602
279 Ga0466963_0029360
280 Ga0466964_0004023
281 Ga0466964_0040595
282 Ga0466971_0017719
283 Ga0466971_0063557
284 Ga0466970_0016080
285 Ga0466970_0125298
286 Ga0466957_0003086
287 Ga0466960_0016350
288 Ga0466959_0023171
289 Ga0466959_0084561
290 Ga0466958_0032390
291 Ga0466967_0030786
292 Ga0495592_0013792
293 Ga0495603_0039460
294 Ga0495629_0009121
295 Ga0495629_0018802
296 Ga0495629_0023371
297 Ga0495651_0016140
298 Ga0495662_0001483
299 Ga0495662_0009088
300 Ga0495662_0056891
301 Ga0495664_0049889
302 Ga0495594_0034260
303 Ga0495594_0059181
304 Ga0495594_0076923
305 Ga0495607_0020306
306 Ga0495628_0063856
307 Ga0495652_0072044
308 Ga0495587_0001447
309 Ga0495634_0002506
310 Ga0495611_0007314
311 Ga0495611_0011242
312 Ga0495625_0009440
313 Ga0495635_0060062
314 Ga0495661_0042971
315 Ga0495588_0016057
316 Ga0495657_0021618
317 Ga0495657_0027989
318 Ga0495599_0059109
319 Ga0495646_0003777
320 Ga0495658_0022879
321 Ga0495613_0018675
322 Ga0495613_0070343
323 Ga0495613_0105271
324 Ga0495613_0183685
325 Ga0495671_0021956
326 Ga0495600_0061455
327 Ga0495581_0008514
328 Ga0495604_0003195
329 Ga0495636_0003853
330 Ga0495636_0066154
331 Ga0495676_0032209
332 Ga0495687_001860
333 Ga0495687_006137
334 Ga0495675_0007535
335 Ga0495685_009505
336 Ga0495681_0000532
337 Ga0495686_0028750
338 Ga0495593_0008049
339 Ga0495602_0068308
340 Ga0495614_0010585
341 Ga0495614_0015135
342 Ga0501031_0027413
343 Ga0501032_0030706
344 Ga0501032_0133282
345 Ga0501033_0001896
346 Ga0501033_0066313
347 Ga0501033_0106215
348 Ga0501034_0016944
349 Ga0501034_0024451
350 Ga0501034_0053732
351 Ga0501034_0144529
352 Ga0501036_0017724
353 Ga0501036_0040951
354 Ga0501036_0052940
355 Ga0501038_0012561
356 Ga0501038_0039256
357 Ga0501039_0039772
358 Ga0501039_0047844
359 Ga0501043_0002637
360 Ga0501043_0004479
361 Ga0501043_0030611
362 Ga0501046_0040461
363 Ga0501047_0007592
364 Ga0501047_0138632
365 Ga0501048_0033372
366 Ga0501070_0004180
367 Ga0501074_0003297
368 Ga0501035_0035204
369 Ga0501035_0049600
370 Ga0501035_0252981
371 Ga0501044_0001669
372 Ga0501044_0160099
373 Ga0501045_0141719
374 nmdc:mga0yw44_33768_c1
375 nmdc:mga04h51_5768_c1
376 nmdc:mga07m45_75141_c1
377 Ga0495619_0066057
378 Ga0500583_0090714
379 Ga0500640_015625
380 Ga0500560_002024
381 Ga0500573_0030101
382 Ga0500573_0076606
383 Ga0500624_001769
384 Ga0466962_0014872
385 2547411448
386 2554256167
387 2585310777
388 2585317790
389 2643943996
390 2644269404
391 2644434733
392 2644632335
393 2785371581
394 2786672743
395 2804847976
396 2808844099
397 2808913702
398 2809234152
399 2811844331
400 2812355869
401 2812478686
402 2852639554
403 2862186498
404 2862284657
405 2862392416
406 2862577432
407 2863408693
408 2867373928
409 2867432127
410 2877679030
411 2912730086
412 2912762844
413 2918506582
414 2946069919
415 2947226858
416 2954005573
417 2954383928
418 2954679037
419 2954685116
420 2954694725
421 2954709928
422 2954714230
423 2954724181
424 2954737658
425 2954743077
426 2954756493
427 2954762035
428 2990065111
429 3006394063
430 3006496779
431 8008562863
432 8008577086
433 8025536192
434 8048130756
435 8048413135

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17964

Big_10

Bacterial Ig domain

48

211

0.99

PF03734

YkuD

L,D-transpeptidase catalytic domain

216

349

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gsq-assembly1.cif.gz_A structural basis for the inhibition of mycobacterium tuberculosis l,d-transpeptidase by meropenem, a drug effective against extensively drug-resistant strains 0.9359 104 361
4gsq-assembly1.cif.gz_A structural basis for the inhibition of mycobacterium tuberculosis l,d-transpeptidase by meropenem, a drug effective against extensively drug-resistant strains 0.9102 104 361
7a1c-assembly1.cif.gz_A ldtmt2 with covalent adduct derived from n-thio-beta-lactam 1a 0.9074 104 361
5lb1-assembly2.cif.gz_B crystal structure of the mycobacterium tuberculosis l,d-transpeptidase-2 (ldtmt2) bc-module with thionitrobenzoate (tnb) adduct at the active site cysteine-354 0.9052 105 361
7a1c-assembly2.cif.gz_B ldtmt2 with covalent adduct derived from n-thio-beta-lactam 1a 0.9027 104 361
ID Description Score Start End Superfamily
4hu2A02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9589 106 204 2.60.40.3710
3vynB01 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9438 13 99 2.60.40.3780
4hu2A02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9405 106 204 2.60.40.3710
5dujB02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9388 101 203 2.60.40.3710
af_I6Y9J2_53_150_2.60.40.3780 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9386 13 104 2.60.40.3780
ID Description Score Start End GO Terms
AF-A0A6B3G121-F1-model_v4 Bacterial Ig domain-containing protein 0.9844 10 102
AF-A0A0L8M333-F1-model_v4 deleted 0.9732 106 250
AF-A0A0M8RJ85-F1-model_v4 Lipoprotein 0.9731 130 212
AF-A0A0L8M333-F1-model_v4 deleted 0.9538 106 250
AF-A0A6B3II95-F1-model_v4 Bacterial Ig domain-containing protein 0.949 51 228

Map