F328282

General Info

Members Datasets Scaffolds Average Seq Length
217 156 434 311

Family's Representative Sequence

Representative Sequence 3300003322|rootL2_10335850|rootL2_103358502
Length 335
Sequence MKARHVLSLADIGPENISKLVNDSLAFASGRAGRKRPLEGKVVGIYFRGTSTRTRTSFTVAAMKLGADIITYGPNDLQIATGETIEDTARVLSGYLDVLVIRTNSSIEEMRTLASQDRMAIVNAMSSNEHPTQALADMVTIREALGRLEDVHILYLGEGNNSAAALALVVGMMPGMRLTLITPEGYGVPEDVLETARGFARESNSTIEQHHDINDLPRNVDVVYTTRWQTMGVPKADPDWEQKFWPYRVTEELMAQVSKPSGTIFLHDLPAVRGAEVTDEVLDGPQSVAFRQAENKLNSALAVLSWCVSQNEAQAPLPNLYQQERAETFQSALTT

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
18 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
19 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
20 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
21 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
22 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
23 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
26 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
33 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
43 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
54 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
55 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
60 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
61 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
62 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
82 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
86 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
90 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
91 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
92 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
93 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
96 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
97 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
98 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
99 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
100 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
101 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
102 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
103 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
104 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
105 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
106 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
107 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
108 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
109 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
110 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
111 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
112 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
113 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
114 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
115 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
116 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
117 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
118 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
119 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
120 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
121 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
122 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
123 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
124 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
125 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
126 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
127 3300049650 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought Metagenome Rhizosphere
128 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
129 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
130 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
131 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
132 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
133 3300049678 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought Metagenome Rhizosphere
134 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
135 3300049681 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought Metagenome Rhizosphere
136 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
137 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
138 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
139 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
140 3300049764 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_A_4_control Metagenome Rhizosphere
141 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere
142 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
143 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
144 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
145 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
146 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
147 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
148 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
149 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
150 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
151 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
152 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
153 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
154 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
155 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
156 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.7
Metatranscriptomes 0
Isolates 2.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.46
Nodule 0
Rhizoplane 1.38
Rhizosphere 94.01
Stem 0
Stem Tuber 0
Unclassified 11.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10335850 3300003322 Bacteria 1736
2 MBSR1b_contig_10860753 2162886012 Unclassified 1642
3 MBSR1b_contig_14220892 2162886012 Bacteria 2021
4 JGI24751J29686_10000352 3300002459 Bacteria 16232
5 JGI25406J46586_10002221 3300003203 Bacteria 9160
6 rootL2_10353993 3300003322 Bacteria 1300
7 Ga0065712_10000234 3300005290 Bacteria 18061
8 Ga0065712_10000628 3300005290 Bacteria 9334
9 Ga0065712_10004394 3300005290 Bacteria 4218
10 Ga0065715_10000780 3300005293 Bacteria 10870
11 Ga0065715_10000971 3300005293 Bacteria 9779
12 Ga0065715_10090515 3300005293 Bacteria 6880
13 Ga0065715_10094414 3300005293 Bacteria 4347
14 Ga0065715_10115542 3300005293 Bacteria 2412
15 Ga0065715_10120128 3300005293 Unclassified 2266
16 Ga0065707_10117506 3300005295 Bacteria 2209
17 Ga0070670_100000029 3300005331 Bacteria 180239
18 Ga0070670_100051344 3300005331 Unclassified 3542
19 Ga0070670_100096121 3300005331 Bacteria 2548
20 Ga0068869_100042990 3300005334 Bacteria 3243
21 Ga0070682_100005350 3300005337 Bacteria 7144
22 Ga0070689_100203282 3300005340 Bacteria 1618
23 Ga0070692_10005011 3300005345 Bacteria 5595
24 Ga0070668_100030312 3300005347 Bacteria 4112
25 Ga0070675_100099497 3300005354 Bacteria 2448
26 Ga0070673_100055492 3300005364 Unclassified 3122
27 Ga0070673_100113363 3300005364 Bacteria 2252
28 Ga0070673_100297427 3300005364 Bacteria 1420
29 Ga0070688_100151807 3300005365 Bacteria 1584
30 Ga0070703_10000220 3300005406 Bacteria 27527
31 Ga0070710_10000094 3300005437 Bacteria 40516
32 Ga0070705_100006405 3300005440 Bacteria 5771
33 Ga0070700_100059845 3300005441 Bacteria 2399
34 Ga0070700_100083599 3300005441 Bacteria 2067
35 Ga0070694_100140985 3300005444 Bacteria 1751
36 Ga0070694_100234095 3300005444 Unclassified 1383
37 Ga0070708_100101095 3300005445 Bacteria 2640
38 Ga0070678_100298533 3300005456 Bacteria 1368
39 Ga0068853_100001474 3300005539 Bacteria 17091
40 Ga0070695_100002935 3300005545 Bacteria 9930
41 Ga0070695_100173036 3300005545 Unclassified 1524
42 Ga0070693_100004736 3300005547 Bacteria 6472
43 Ga0070693_100225562 3300005547 Bacteria 1230
44 Ga0070704_100044287 3300005549 Bacteria 3091
45 Ga0070704_100150304 3300005549 Bacteria 1830
46 Ga0068854_100291444 3300005578 Unclassified 1317
47 Ga0070702_100001136 3300005615 Bacteria 10673
48 Ga0068852_100023310 3300005616 Bacteria 4981
49 Ga0068859_100052403 3300005617 Bacteria 4102
50 Ga0068859_100063153 3300005617 Unclassified 3734
51 Ga0068859_100234984 3300005617 Bacteria 1922
52 Ga0068864_100001609 3300005618 Bacteria 18619
53 Ga0068870_10003992 3300005840 Bacteria 6299
54 Ga0068870_10034636 3300005840 Bacteria 2585
55 Ga0068858_100049812 3300005842 Bacteria 3878
56 Ga0068858_100087415 3300005842 Bacteria 2899
57 Ga0068860_100004072 3300005843 Bacteria 15001
58 Ga0068860_100053331 3300005843 Unclassified 3845
59 Ga0068860_100178314 3300005843 Bacteria 2054
60 Ga0068860_100345131 3300005843 Bacteria 1464
61 Ga0068862_100141765 3300005844 Unclassified 2134
62 Ga0081455_10001260 3300005937 Bacteria 31628
63 Ga0081455_10002414 3300005937 Bacteria 22285
64 Ga0081539_10000063 3300005985 Bacteria 248201
65 Ga0081539_10001645 3300005985 Bacteria 36305
66 Ga0081539_10060371 3300005985 Bacteria 2083
67 Ga0097621_100005624 3300006237 Bacteria 8839
68 Ga0068871_100022232 3300006358 Bacteria 4890
69 Ga0075431_100033320 3300006847 Bacteria 5309
70 Ga0075431_100039532 3300006847 Bacteria 4859
71 Ga0075433_10192937 3300006852 Unclassified 1812
72 Ga0075434_100067533 3300006871 Bacteria 3561
73 Ga0097620_100052402 3300006931 Bacteria 4102
74 Ga0097620_100063154 3300006931 Unclassified 3734
75 Ga0097620_100234975 3300006931 Bacteria 1922
76 Ga0111539_10004932 3300009094 Bacteria 17362
77 Ga0111539_10033159 3300009094 Bacteria 6270
78 Ga0105247_10002174 3300009101 Bacteria 13527
79 Ga0105247_10146630 3300009101 Bacteria 1552
80 Ga0114129_10011647 3300009147 Bacteria 12519
81 Ga0114129_10133688 3300009147 Bacteria 3405
82 Ga0114129_10708514 3300009147 Bacteria 1293
83 Ga0105243_10000945 3300009148 Bacteria 27223
84 Ga0105243_10102950 3300009148 Bacteria 2373
85 Ga0105241_10234491 3300009174 Bacteria 1548
86 Ga0105242_10000649 3300009176 Bacteria 27243
87 Ga0105248_10001675 3300009177 Bacteria 24662
88 Ga0105248_10298668 3300009177 Bacteria 1814
89 Ga0105237_10000954 3300009545 Bacteria 38887
90 Ga0105238_10003794 3300009551 Bacteria 15017
91 Ga0105238_10206635 3300009551 Bacteria 1940
92 Ga0105246_10029648 3300011119 Unclassified 3604
93 Ga0157373_10002235 3300013100 Bacteria 14659
94 Ga0157373_10045169 3300013100 Bacteria 3145
95 Ga0163162_10352106 3300013306 Bacteria 1605
96 Ga0163163_10000043 3300014325 Bacteria 137150
97 Ga0157380_10046168 3300014326 Bacteria 3420
98 Ga0157377_10118498 3300014745 Bacteria 1601
99 Ga0157377_10188704 3300014745 Bacteria 1301
100 Ga0213876_10000062 3300021384 Bacteria 128625
101 Ga0228598_1022165 3300024227 Bacteria 1250
102 Ga0207653_10000259 3300025885 Bacteria 33105
103 Ga0207710_10000166 3300025900 Bacteria 69648
104 Ga0207647_10001127 3300025904 Bacteria 20564
105 Ga0207647_10141219 3300025904 Bacteria 1411
106 Ga0207643_10001799 3300025908 Bacteria 11919
107 Ga0207643_10077014 3300025908 Unclassified 1928
108 Ga0207654_10148644 3300025911 Bacteria 1501
109 Ga0207671_10002210 3300025914 Bacteria 21103
110 Ga0207694_10032957 3300025924 Bacteria 3968
111 Ga0207650_10000005 3300025925 Bacteria 663190
112 Ga0207650_10158664 3300025925 Bacteria 1791
113 Ga0207686_10000046 3300025934 Bacteria 119562
114 Ga0207686_10000220 3300025934 Bacteria 43582
115 Ga0207709_10000041 3300025935 Bacteria 258279
116 Ga0207709_10370002 3300025935 Bacteria 1087
117 Ga0207711_10560049 3300025941 Bacteria 1066
118 Ga0207679_10351503 3300025945 Bacteria 1285
119 Ga0207651_10116370 3300025960 Bacteria 2018
120 Ga0207651_10171149 3300025960 Bacteria 1713
121 Ga0207703_10071050 3300026035 Unclassified 2874
122 Ga0207639_10414689 3300026041 Unclassified 1216
123 Ga0207708_10002946 3300026075 Bacteria 12556
124 Ga0207708_10068729 3300026075 Bacteria 2711
125 Ga0207676_10000729 3300026095 Bacteria 25752
126 Ga0207676_10002961 3300026095 Bacteria 12111
127 Ga0207676_10068613 3300026095 Bacteria 2837
128 Ga0207674_10121876 3300026116 Bacteria 2574
129 Ga0207674_10267400 3300026116 Unclassified 1657
130 Ga0207698_10106532 3300026142 Bacteria 2338
131 Ga0207428_10003260 3300027907 Bacteria 15816
132 Ga0268266_10165710 3300028379 Bacteria 2002
133 Ga0268265_10119598 3300028380 Unclassified 2168
134 Ga0268264_10044526 3300028381 Bacteria 3682
135 Ga0268264_10267317 3300028381 Unclassified 1596
136 Ga0268264_10334740 3300028381 Unclassified 1436
137 Ga0307515_10091849 3300028794 Bacteria 3787
138 Ga0307518_10000028 3300031838 Bacteria 98010
139 Ga0307410_10090859 3300031852 Bacteria 2167
140 Ga0307416_100360907 3300032002 Bacteria 1475
141 Ga0307416_100526141 3300032002 Unclassified 1252
142 Ga0307414_10037932 3300032004 Bacteria 3231
143 Ga0373940_0020152 3300035088 Bacteria 1692
144 Ga0373941_0022607 3300035115 Bacteria 1786
145 Ga0395898_0115671 3300037466 Bacteria 2570
146 Ga0436364_0622586 3300037853 Bacteria 9975
147 Ga0436365_0924676 3300039437 Bacteria 448697
148 Ga0451577_0628982 3300042876 Unclassified 974
149 Ga0495617_037893 3300046452 Bacteria 1614
150 Ga0495638_0065091 3300046460 Bacteria 2245
151 Ga0495605_0008614 3300046474 Bacteria 5762
152 Ga0495585_0028339 3300046492 Bacteria 3194
153 Ga0495596_0057112 3300046500 Bacteria 1523
154 Ga0495607_0114710 3300046501 Bacteria 1423
155 Ga0495583_0001089 3300046506 Bacteria 30083
156 Ga0495583_0015493 3300046506 Bacteria 4143
157 Ga0495606_0031845 3300046507 Bacteria 3661
158 Ga0495643_0022510 3300046522 Bacteria 3595
159 Ga0495648_0015604 3300046524 Bacteria 5506
160 Ga0495642_0023756 3300046528 Bacteria 2422
161 Ga0495654_0028055 3300046530 Bacteria 2881
162 Ga0495597_0106037 3300046542 Bacteria 1181
163 Ga0495611_0000162 3300046648 Bacteria 48390
164 Ga0495611_0026903 3300046648 Bacteria 2511
165 Ga0495625_0037829 3300046660 Bacteria 3535
166 Ga0495649_0016827 3300046694 Bacteria 4139
167 Ga0495589_0016307 3300046794 Bacteria 3819
168 Ga0495600_0220576 3300046809 Bacteria 1213
169 Ga0495636_0052512 3300047318 Bacteria 1710
170 Ga0495672_0047490 3300047320 Bacteria 2553
171 Ga0495672_0055309 3300047320 Bacteria 2316
172 Ga0495683_0003134 3300047323 Bacteria 9679
173 Ga0495683_0016277 3300047323 Bacteria 3862
174 Ga0495687_012691 3300047443 Bacteria 4442
175 Ga0495687_102512 3300047443 Bacteria 1070
176 Ga0495677_0018522 3300047445 Bacteria 2524
177 Ga0495626_0030221 3300048091 Bacteria 2614
178 Ga0496109_0000826 3300048912 Bacteria 25863
179 Ga0496111_0120720 3300048914 Bacteria 1936
180 Ga0496113_0312304 3300048916 Bacteria 1259
181 Ga0501298_000320 3300049521 Bacteria 6386
182 Ga0501299_009393 3300049522 Bacteria 1611
183 Ga0501038_0005322 3300049574 Bacteria 11958
184 Ga0501068_0071372 3300049584 Bacteria 2120
185 Ga0501199_002258 3300049650 Bacteria 1790
186 Ga0501202_010512 3300049652 Unclassified 1719
187 Ga0501216_003226 3300049660 Bacteria 2370
188 Ga0501217_022026 3300049661 Bacteria 1508
189 Ga0501224_003285 3300049664 Bacteria 2249
190 Ga0501236_014469 3300049670 Bacteria 1093
191 Ga0501248_000710 3300049678 Bacteria 1894
192 Ga0501249_001959 3300049679 Bacteria 4188
193 Ga0501251_005506 3300049681 Bacteria 1346
194 Ga0501225_0005192 3300049705 Bacteria 3833
195 Ga0501234_008978 3300049707 Bacteria 1559
196 Ga0501245_005811 3300049708 Bacteria 1713
197 Ga0501080_0406856 3300049742 Bacteria 1224
198 Ga0501267_002470 3300049764 Bacteria 1652
199 Ga0501270_003732 3300049767 Unclassified 1666
200 Ga0501283_011120 3300049779 Bacteria 1334
201 Ga0501212_001834 3300049851 Bacteria 2467
202 Ga0501226_000849 3300049853 Bacteria 4087
203 nmdc:mga05p37_32172_c2 3300050507 Bacteria 5724
204 nmdc:mga05p37_5094_c1 3300050507 Bacteria 15411
205 nmdc:mga05p37_566851_c1 3300050507 Bacteria 1289
206 nmdc:mga06r32_666337_c1 3300050510 Bacteria 1008
207 nmdc:mga06r32_79489_c1 3300050510 Unclassified 3190
208 nmdc:mga08y16_299547_c1 3300050511 Bacteria 1658
209 nmdc:mga0n895_47850_c1 3300050512 Bacteria 4183
210 nmdc:mga0a205_95090_c1 3300050515 Bacteria 2878
211 Ga0500584_036006 3300053726 Bacteria 2286
212 Ga0530510_0209036 3300061734 Bacteria 1450
213 2586061181 2585427649 Bacteria 9053857
214 2616905378 2616644941 Bacteria 8510691
215 2861526900 2861520306 Bacteria 8348283
216 2918507008 2918501144 Bacteria 8668083
217 2935391032 2935390628 Bacteria 7043367
218 rootL2_10335850
219 MBSR1b_contig_10860753
220 MBSR1b_contig_14220892
221 JGI24751J29686_10000352
222 JGI25406J46586_10002221
223 rootL2_10353993
224 Ga0065712_10000234
225 Ga0065712_10000628
226 Ga0065712_10004394
227 Ga0065715_10000780
228 Ga0065715_10000971
229 Ga0065715_10090515
230 Ga0065715_10094414
231 Ga0065715_10115542
232 Ga0065715_10120128
233 Ga0065707_10117506
234 Ga0070670_100000029
235 Ga0070670_100051344
236 Ga0070670_100096121
237 Ga0068869_100042990
238 Ga0070682_100005350
239 Ga0070689_100203282
240 Ga0070692_10005011
241 Ga0070668_100030312
242 Ga0070675_100099497
243 Ga0070673_100055492
244 Ga0070673_100113363
245 Ga0070673_100297427
246 Ga0070688_100151807
247 Ga0070703_10000220
248 Ga0070710_10000094
249 Ga0070705_100006405
250 Ga0070700_100059845
251 Ga0070700_100083599
252 Ga0070694_100140985
253 Ga0070694_100234095
254 Ga0070708_100101095
255 Ga0070678_100298533
256 Ga0068853_100001474
257 Ga0070695_100002935
258 Ga0070695_100173036
259 Ga0070693_100004736
260 Ga0070693_100225562
261 Ga0070704_100044287
262 Ga0070704_100150304
263 Ga0068854_100291444
264 Ga0070702_100001136
265 Ga0068852_100023310
266 Ga0068859_100052403
267 Ga0068859_100063153
268 Ga0068859_100234984
269 Ga0068864_100001609
270 Ga0068870_10003992
271 Ga0068870_10034636
272 Ga0068858_100049812
273 Ga0068858_100087415
274 Ga0068860_100004072
275 Ga0068860_100053331
276 Ga0068860_100178314
277 Ga0068860_100345131
278 Ga0068862_100141765
279 Ga0081455_10001260
280 Ga0081455_10002414
281 Ga0081539_10000063
282 Ga0081539_10001645
283 Ga0081539_10060371
284 Ga0097621_100005624
285 Ga0068871_100022232
286 Ga0075431_100033320
287 Ga0075431_100039532
288 Ga0075433_10192937
289 Ga0075434_100067533
290 Ga0097620_100052402
291 Ga0097620_100063154
292 Ga0097620_100234975
293 Ga0111539_10004932
294 Ga0111539_10033159
295 Ga0105247_10002174
296 Ga0105247_10146630
297 Ga0114129_10011647
298 Ga0114129_10133688
299 Ga0114129_10708514
300 Ga0105243_10000945
301 Ga0105243_10102950
302 Ga0105241_10234491
303 Ga0105242_10000649
304 Ga0105248_10001675
305 Ga0105248_10298668
306 Ga0105237_10000954
307 Ga0105238_10003794
308 Ga0105238_10206635
309 Ga0105246_10029648
310 Ga0157373_10002235
311 Ga0157373_10045169
312 Ga0163162_10352106
313 Ga0163163_10000043
314 Ga0157380_10046168
315 Ga0157377_10118498
316 Ga0157377_10188704
317 Ga0213876_10000062
318 Ga0228598_1022165
319 Ga0207653_10000259
320 Ga0207710_10000166
321 Ga0207647_10001127
322 Ga0207647_10141219
323 Ga0207643_10001799
324 Ga0207643_10077014
325 Ga0207654_10148644
326 Ga0207671_10002210
327 Ga0207694_10032957
328 Ga0207650_10000005
329 Ga0207650_10158664
330 Ga0207686_10000046
331 Ga0207686_10000220
332 Ga0207709_10000041
333 Ga0207709_10370002
334 Ga0207711_10560049
335 Ga0207679_10351503
336 Ga0207651_10116370
337 Ga0207651_10171149
338 Ga0207703_10071050
339 Ga0207639_10414689
340 Ga0207708_10002946
341 Ga0207708_10068729
342 Ga0207676_10000729
343 Ga0207676_10002961
344 Ga0207676_10068613
345 Ga0207674_10121876
346 Ga0207674_10267400
347 Ga0207698_10106532
348 Ga0207428_10003260
349 Ga0268266_10165710
350 Ga0268265_10119598
351 Ga0268264_10044526
352 Ga0268264_10267317
353 Ga0268264_10334740
354 Ga0307515_10091849
355 Ga0307518_10000028
356 Ga0307410_10090859
357 Ga0307416_100360907
358 Ga0307416_100526141
359 Ga0307414_10037932
360 Ga0373940_0020152
361 Ga0373941_0022607
362 Ga0395898_0115671
363 Ga0436364_0622586
364 Ga0436365_0924676
365 Ga0451577_0628982
366 Ga0495617_037893
367 Ga0495638_0065091
368 Ga0495605_0008614
369 Ga0495585_0028339
370 Ga0495596_0057112
371 Ga0495607_0114710
372 Ga0495583_0001089
373 Ga0495583_0015493
374 Ga0495606_0031845
375 Ga0495643_0022510
376 Ga0495648_0015604
377 Ga0495642_0023756
378 Ga0495654_0028055
379 Ga0495597_0106037
380 Ga0495611_0000162
381 Ga0495611_0026903
382 Ga0495625_0037829
383 Ga0495649_0016827
384 Ga0495589_0016307
385 Ga0495600_0220576
386 Ga0495636_0052512
387 Ga0495672_0047490
388 Ga0495672_0055309
389 Ga0495683_0003134
390 Ga0495683_0016277
391 Ga0495687_012691
392 Ga0495687_102512
393 Ga0495677_0018522
394 Ga0495626_0030221
395 Ga0496109_0000826
396 Ga0496111_0120720
397 Ga0496113_0312304
398 Ga0501298_000320
399 Ga0501299_009393
400 Ga0501038_0005322
401 Ga0501068_0071372
402 Ga0501199_002258
403 Ga0501202_010512
404 Ga0501216_003226
405 Ga0501217_022026
406 Ga0501224_003285
407 Ga0501236_014469
408 Ga0501248_000710
409 Ga0501249_001959
410 Ga0501251_005506
411 Ga0501225_0005192
412 Ga0501234_008978
413 Ga0501245_005811
414 Ga0501080_0406856
415 Ga0501267_002470
416 Ga0501270_003732
417 Ga0501283_011120
418 Ga0501212_001834
419 Ga0501226_000849
420 nmdc:mga05p37_32172_c2
421 nmdc:mga05p37_5094_c1
422 nmdc:mga05p37_566851_c1
423 nmdc:mga06r32_666337_c1
424 nmdc:mga06r32_79489_c1
425 nmdc:mga08y16_299547_c1
426 nmdc:mga0n895_47850_c1
427 nmdc:mga0a205_95090_c1
428 Ga0500584_036006
429 Ga0530510_0209036
430 2586061181
431 2616905378
432 2861526900
433 2918507008
434 2935391032

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02729

OTCace_N

Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain

4

143

0.96

PF00185

OTCace

Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

149

307

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2w37-assembly1.cif.gz_A crystal structure of the hexameric catabolic ornithine transcarbamylase from lactobacillus hilgardii 0.909 2 288
7nov-assembly1.cif.gz_C crystal structure of mycobacterium tuberculosis argf in complex with (4-methyl-3-nitrophenyl)boronic acid. 0.9076 1 292
7np0-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis argf in complex with (4-nitrophenyl)boronic acid. 0.8985 1 292
4jhx-assembly1.cif.gz_B crystal structure of anabolic ornithine carbamoyltransferase from vibrio vulnificus in complex with carbamoylphosphate and arginine 0.8936 2 288
7nov-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis argf in complex with (4-methyl-3-nitrophenyl)boronic acid. 0.8931 1 292
ID Description Score Start End Superfamily
2i6uC02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.9088 132 278 3.40.50.1370
af_Q2FUX8_12_142_3.40.50.1370 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.9014 1 129 3.40.50.1370
1c9yA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.8989 132 278 3.40.50.1370
af_Q58291_2_122_3.40.50.1370 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.8981 3 124 3.40.50.1370
2w37B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Aspartate/ornithine carbamoyltransferase 0.8963 132 278 3.40.50.1370
ID Description Score Start End GO Terms
AF-A0A2V8QWK9-F1-model_v4 Ornithine carbamoyltransferase 0.9765 1 158 GO:0004585
GO:0016597
GO:0019240
GO:0042450
AF-A0A2V8QWK9-F1-model_v4 Ornithine carbamoyltransferase 0.9586 1 158 GO:0004585
GO:0016597
GO:0019240
GO:0042450
AF-A0A321LSM8-F1-model_v4 N-(2-amino-2-carboxyethyl)-L-glutamate synthase (EC 2.5.1.140) 0.9509 2 295 GO:0004585
GO:0006535
GO:0016597
GO:0016765
AF-A0A0K1EIK9-F1-model_v4 Ornithine carbamoyltransferase (EC 2.1.3.3) 0.945 2 292 GO:0004585
GO:0016597
GO:0019240
GO:0042450
AF-A0A3D1BMV9-F1-model_v4 Ornithine carbamoyltransferase (EC 2.1.3.3) 0.9398 2 146 GO:0004585
GO:0016597
GO:0019240
GO:0042450

Map