F327952

General Info

Members Datasets Scaffolds Average Seq Length
216 184 67 399

Family's Representative Sequence

Representative Sequence 3300046515|Ga0495620_0001213|Ga0495620_0001213_10692_11900
Length 389
Sequence MQSGNVTTPFGRRPMTLALVRQQRATTEIKPGKSADKWKVFRDASEAREPLGLQDRSLAVLDALLSFYPESELRQDTQPVVFPSNAQLTLRAHGIAGATLRRHLALLVEAGLIIRRDSANGKRFVRKGKTGEIESAFGFDLSPLLMRAEELAQIAQQVAAERIAFRRAKENLTICRRDVRKLITAAIEEGADGDWEKIESLYVELVGLLEEMKMLQEEILNRLDLQQKVENNSTNAAHNGRHIQNSNTESLNELEPSSENEQGARPSRNHDQKNLPLKAFPLGIVLRACPEISTYGPGGAIGSWRDLMAAAVTVRSMLGVSPSAYQEACEAMGPENAAVTIACILERAGHINSAGGYLRDLTSKTERGEFSLGPALMALLRANGDRRAG

Samples

Sample ID Description Type Environment
1 2508501122 Ensifer yinggardensis WSM1721 Isolate Nodule
2 2509276021 Rhizobium leguminosarum bv. trifolii WSM597 Isolate Nodule
3 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
4 2513237085 Rhizobium leguminosarum bv. viciae UPM1137 Isolate Nodule
5 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
6 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
7 2513237093 Rhizobium leguminosarum bv. phaseoli FA23 Isolate Nodule
8 2513237138 Rhizobium favelukesii OR191 Isolate Nodule
9 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
10 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
11 2513237146 Rhizobium mongolense USDA 1844 (Illumina) Isolate Nodule
12 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
13 2515075009 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
14 2515154113 Rhizobium ruizarguesonis Vc2 Isolate Nodule
15 2517287029 Rhizobium leguminosarum bv. trifolii SRDI565 Isolate Nodule
16 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
17 2529292951 Rhizobium sp. CCGE 510 Isolate Nodule
18 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
19 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
20 2551306092 Sinorhizobium meliloti AK75 Isolate Nodule
21 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
22 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
23 2582581867 Rhizobium sp. OV201 Isolate Rhizosphere
24 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
25 2585427590 Rhizobium sp. CF048 Isolate Rhizosphere
26 2585427593 Rhizobium tropici CF286 Isolate Rhizosphere
27 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
28 2599185170 Rhizobium mongolense USDA 1844 (PacBio) Isolate Nodule
29 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
30 2643221582 Rhizobium sp. Root651 Isolate Unclassified
31 2643221607 Rhizobium sp. Root73 Isolate Unclassified
32 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
33 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
34 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
35 2643221655 Ensifer sp. Root1252 Isolate Unclassified
36 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
37 2643221712 Ensifer sp. Root258 Isolate Unclassified
38 2643221719 Rhizobium sp. Root274 Isolate Unclassified
39 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
40 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
41 2724679232 Rhizobium leguminosarum Vaf12 Isolate Unclassified
42 2765235942 Rhizobium sp. WYCCWR10014 Isolate Nodule
43 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
44 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
45 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
46 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
47 2791355266 Rhizobium sp. L43 Isolate Nodule
48 2802429605 Rhizobium sophoriradicis L101 Isolate Nodule
49 2802429606 Rhizobium sophoriradicis JJW1 Isolate Nodule
50 2802429633 Rhizobium anhuiense J3 Isolate Nodule
51 2802429635 Rhizobium anhuiense Y27 Isolate Nodule
52 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
53 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
54 2838035591 Rhizobium mongolense SEMIA 4087 Isolate Nodule
55 2838074704 Sinorhizobium terangae SEMIA 6460 Isolate Unclassified
56 2838686498 Rhizobium leguminosarum SEMIA 416 Isolate Nodule
57 2841851746 Rhizobium leguminosarum SEMIA 498 Isolate Nodule
58 2842077413 Rhizobium leguminosarum SEMIA 422 Isolate Nodule
59 2842110456 Rhizobium esperanzae SEMIA 414 Isolate Nodule
60 2842271015 Rhizobium leguminosarum SEMIA 488 Isolate Nodule
61 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
62 2842495871 Rhizobium etli SEMIA 4062 Isolate Nodule
63 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
64 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
65 2844454524 Rhizobium leguminosarum bv. viciae BIHB 1217 Isolate Nodule
66 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
67 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
68 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
69 2857516855 Rhizobium sp. R-72456 Isolate Unclassified
70 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
71 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
72 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
73 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
74 2916028427 Sinorhizobium meliloti USDA1613 Isolate Nodule
75 2916055098 Sinorhizobium meliloti USDA1770 Isolate Nodule
76 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
77 2921201388 Sinorhizobium meliloti USDA1692 Isolate Nodule
78 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
79 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
80 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
81 2923556063 Rhizobium tibeticum 3740 Isolate Unclassified
82 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
83 2924172951 Sinorhizobium meliloti USDA1626 Isolate Nodule
84 2933586486 Rhizobium leguminosarum SEMIA 4039 Isolate Nodule
85 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
86 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
87 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
88 2937036028 Sinorhizobium medicae USDA1608 Isolate Nodule
89 2937042894 Sinorhizobium meliloti USDA1687 Isolate Nodule
90 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
91 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
92 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
93 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
94 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
95 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
96 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
97 2957478035 Sinorhizobium meliloti USDA1171 Isolate Nodule
98 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
99 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
100 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
101 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
102 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
103 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
104 2964705432 Sinorhizobium meliloti USDA1614 Isolate Nodule
105 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
106 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
107 2967775926 Sinorhizobium meliloti USDA1678 Isolate Nodule
108 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
109 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
110 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
111 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
112 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
113 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
114 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
115 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
116 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
117 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
118 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
119 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
120 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
121 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
122 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
123 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
124 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
125 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
126 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
127 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
128 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
129 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
130 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
131 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
132 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
133 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
134 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
135 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
136 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
137 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
138 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
139 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
140 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
141 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
142 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
143 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
144 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
145 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
146 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
147 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
148 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
149 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
150 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
151 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
152 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
153 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
154 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
155 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
156 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
157 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
158 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
159 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
160 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
161 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
162 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
163 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
164 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
165 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
166 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
167 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
168 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
169 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
170 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
171 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
172 8005258706 Rhizobium sp. R693 Isolate Nodule
173 8005289223 Rhizobium bangladeshense 1002 Isolate Nodule
174 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
175 8005460587 Rhizobium leguminosarum bv. viciae 248 Isolate Nodule
176 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
177 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
178 8005570704 Rhizobium anhuiense bv. trifolii WYCCWR10015 Isolate Nodule
179 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
180 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
181 8023680758 Rhizobium leguminosarum SARCC-132 Isolate Nodule
182 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
183 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
184 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 31.02
Metatranscriptomes 0
Isolates 68.98

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.13
Nodule 54.63
Rhizoplane 0.46
Rhizosphere 11.11
Stem 0
Stem Tuber 0
Unclassified 16.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1002215 3300002737 Bacteria 7994
2 JGI25165J46597_1000950 3300003214 Bacteria 19828
3 JGI25153J46596_10012267 3300003215 Bacteria 3714
4 rootH2_10035992 3300003320 Bacteria 12141
5 Ga0055526_1008581 3300003771 Bacteria 5065
6 Ga0055524_1013829 3300003775 Bacteria 3020
7 Ga0055528_1000191 3300003790 Bacteria 52111
8 Ga0055528_1015055 3300003790 Bacteria 2815
9 Ga0055540_1000347 3300003792 Bacteria 39251
10 Ga0055540_1017451 3300003792 Bacteria 2003
11 Ga0055543_1000920 3300004625 Bacteria 13708
12 Ga0065165_1001497 3300005262 Bacteria 24706
13 Ga0065165_1013681 3300005262 Bacteria 3207
14 Ga0075364_10001189 3300006051 Bacteria 13954
15 Ga0079104_1003830 3300006946 Bacteria 6747
16 Ga0157371_10001149 3300013102 Bacteria 28495
17 Ga0214544_1011809 3300021320 Bacteria 11815
18 Ga0228710_1008686 3300022740 Bacteria 14446
19 Ga0209437_100614 3300025233 Bacteria 21837
20 Ga0209233_1000562 3300025261 Bacteria 19864
21 Ga0209673_1000020 3300025273 Bacteria 430653
22 Ga0209673_1000126 3300025273 Bacteria 167949
23 Ga0209673_1001059 3300025273 Bacteria 31476
24 Ga0209025_1035408 3300025294 Bacteria 2257
25 Ga0209564_1000114 3300025295 Bacteria 209934
26 Ga0209564_1000368 3300025295 Bacteria 83910
27 Ga0209758_1000527 3300025297 Bacteria 61122
28 Ga0209050_1001269 3300025298 Bacteria 29031
29 Ga0209050_1001764 3300025298 Bacteria 21406
30 Ga0209256_1000123 3300025299 Bacteria 165547
31 Ga0209256_1001075 3300025299 Bacteria 31597
32 Ga0209256_1003576 3300025299 Bacteria 10726
33 Ga0207426_1001108 3300025302 Bacteria 24750
34 Ga0209051_1000032 3300025303 Bacteria 383445
35 Ga0209051_1002366 3300025303 Bacteria 13638
36 Ga0209257_1000521 3300025304 Bacteria 66885
37 Ga0209257_1001518 3300025304 Bacteria 27211
38 Ga0209282_1009258 3300027666 Bacteria 6228
39 Ga0307515_10121862 3300028794 Bacteria 2946
40 Ga0307513_10277844 3300031456 Bacteria 1454
41 Ga0315914_1010517 3300031967 Bacteria 11465
42 Ga0315913_1000270 3300033430 Bacteria 40870
43 Ga0395905_0004879 3300037471 Bacteria 13822
44 Ga0451798_0989485 3300041458 Bacteria 2137
45 Ga0451851_0414805 3300041507 Bacteria 2223
46 Ga0451853_1201066 3300041512 Bacteria 2358
47 Ga0451853_4059526 3300041512 Bacteria 2726
48 Ga0495585_0011089 3300046492 Bacteria 5349
49 Ga0495620_0001213 3300046515 Bacteria 15761
50 Ga0495643_0003041 3300046522 Bacteria 12611
51 Ga0495668_0079493 3300046616 Bacteria 1800
52 Ga0495625_0004571 3300046660 Bacteria 13017
53 Ga0495687_012048 3300047443 Bacteria 4597
54 Ga0495686_0138912 3300047472 Bacteria 1435
55 Ga0496118_0035497 3300048921 Bacteria 4047
56 Ga0496120_0059171 3300048923 Bacteria 2148
57 Ga0496122_0062484 3300048925 Bacteria 2726
58 Ga0496123_0009368 3300048926 Bacteria 8828
59 Ga0496124_0017433 3300048927 Bacteria 6767
60 Ga0496126_0000152 3300048929 Bacteria 161615
61 Ga0501033_0000054 3300049570 Bacteria 108163
62 Ga0501035_0001626 3300049822 Bacteria 22754
63 nmdc:mga00v17_85_c1 3300050491 Bacteria 57269
64 Ga0500559_0003955 3300053136 Bacteria 7140
65 Ga0500616_0000108 3300053153 Bacteria 152917
66 Ga0500622_0001073 3300053156 Bacteria 22737
67 Ga0500636_0000091 3300053177 Bacteria 45101

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046515 Ga0495620_0001213 Ga0495620_0001213_10692_11900 375
2 3300046522 Ga0495643_0003041 Ga0495643_0003041_3710_4918 375
3 3300046660 Ga0495625_0004571 Ga0495625_0004571_8102_9310 375
4 3300047443 Ga0495687_012048 Ga0495687_012048_3409_4575 375
5 3300047472 Ga0495686_0138912 Ga0495686_0138912_59_1267 375
6 iso_pu_bacteria 2921296804 2921304386 376
7 3300013102 Ga0157371_10001149 Ga0157371_1000114913 379
8 iso_pu_bacteria 2838074704 2838080821 381
9 iso_pu_bacteria 2513237084 2513573071 384
10 3300048925 Ga0496122_0062484 Ga0496122_0062484_1384_2541 385
11 iso_pu_bacteria 2791355091 2792623762 385
12 iso_pu_bacteria 2791355092 2792630005 385
13 iso_pu_bacteria 2508501122 2509111253 386
14 iso_pu_bacteria 2838686498 2838693650 386
15 iso_pu_bacteria 2841851746 2841856366 386
16 iso_pu_bacteria 2842271015 2842278119 386
17 iso_pu_bacteria 2842495871 2842500726 386
18 iso_pu_bacteria 2842521101 2842526570 386
19 iso_pu_bacteria 2844454524 2844462338 386
20 iso_pu_bacteria 2847417321 2847423756 386
21 iso_pu_bacteria 2854896431 2854896629 386
22 iso_pu_bacteria 2855839649 2855846592 386
23 iso_pu_bacteria 2913295892 2913298770 386
24 iso_pu_bacteria 2915993759 2915994786 386
25 iso_pu_bacteria 2916028427 2916030777 386
26 iso_pu_bacteria 2916055098 2916059738 386
27 iso_pu_bacteria 2921201388 2921201961 386
28 iso_pu_bacteria 2921263974 2921268851 386
29 iso_pu_bacteria 2924150972 2924151365 386
30 iso_pu_bacteria 2924150972 2924151792 386
31 iso_pu_bacteria 2924172951 2924177958 386
32 iso_pu_bacteria 8018150411 8018152359 386
33 iso_pu_bacteria 2582581867 2585403032 387
34 iso_pu_bacteria 2585427590 2585825226 387
35 3300046492 Ga0495585_0011089 Ga0495585_0011089_1884_3053 389
36 3300046616 Ga0495668_0079493 Ga0495668_0079493_111_1280 389
37 3300048926 Ga0496123_0009368 Ga0496123_0009368_4745_5959 389
38 iso_pu_bacteria 2513237088 2513600490 389
39 iso_pu_bacteria 2513237140 2513881832 389
40 iso_pu_bacteria 2524023209 2524460883 389
41 iso_pu_bacteria 2615840626 2616310032 389
42 iso_pu_bacteria 2643221634 2644192460 389
43 iso_pu_bacteria 2838029111 2838033498 389
44 iso_pu_bacteria 2842475841 2842480231 389
45 iso_pu_bacteria 2842502639 2842507643 389
46 iso_pu_bacteria 2896384573 2896387895 389
47 iso_pu_bacteria 2977565890 2977566774 389
48 3300002737 JGI25162J39368_1002215 JGI25162J39368_10022158 390
49 3300003214 JGI25165J46597_1000950 JGI25165J46597_100095024 390
50 3300003215 JGI25153J46596_10012267 JGI25153J46596_100122673 390
51 3300003320 rootH2_10035992 rootH2_100359928 390
52 3300003771 Ga0055526_1008581 Ga0055526_10085812 390
53 3300003775 Ga0055524_1013829 Ga0055524_10138293 390
54 3300003790 Ga0055528_1000191 Ga0055528_100019117 390
55 3300003790 Ga0055528_1015055 Ga0055528_10150552 390
56 3300003792 Ga0055540_1000347 Ga0055540_10003471 390
57 3300003792 Ga0055540_1017451 Ga0055540_10174512 390
58 3300004625 Ga0055543_1000920 Ga0055543_10009208 390
59 3300005262 Ga0065165_1001497 Ga0065165_100149720 390
60 3300005262 Ga0065165_1013681 Ga0065165_10136814 390
61 3300006051 Ga0075364_10001189 Ga0075364_100011896 390
62 3300006946 Ga0079104_1003830 Ga0079104_10038302 390
63 3300021320 Ga0214544_1011809 Ga0214544_10118098 390
64 3300022740 Ga0228710_1008686 Ga0228710_100868610 390
65 3300025233 Ga0209437_100614 Ga0209437_1006145 390
66 3300025261 Ga0209233_1000562 Ga0209233_100056223 390
67 3300025273 Ga0209673_1000020 Ga0209673_1000020298 390
68 3300025273 Ga0209673_1000126 Ga0209673_100012673 390
69 3300025273 Ga0209673_1001059 Ga0209673_10010598 390
70 3300025294 Ga0209025_1035408 Ga0209025_10354082 390
71 3300025295 Ga0209564_1000114 Ga0209564_100011480 390
72 3300025295 Ga0209564_1000368 Ga0209564_10003689 390
73 3300025297 Ga0209758_1000527 Ga0209758_10005272 390
74 3300025298 Ga0209050_1001269 Ga0209050_100126912 390
75 3300025298 Ga0209050_1001764 Ga0209050_10017642 390
76 3300025299 Ga0209256_1000123 Ga0209256_1000123102 390
77 3300025299 Ga0209256_1001075 Ga0209256_100107521 390
78 3300025299 Ga0209256_1003576 Ga0209256_10035768 390
79 3300025302 Ga0207426_1001108 Ga0207426_100110820 390
80 3300025303 Ga0209051_1000032 Ga0209051_1000032247 390
81 3300025303 Ga0209051_1002366 Ga0209051_100236613 390
82 3300025304 Ga0209257_1000521 Ga0209257_100052122 390
83 3300025304 Ga0209257_1001518 Ga0209257_100151826 390
84 3300027666 Ga0209282_1009258 Ga0209282_10092582 390
85 3300028794 Ga0307515_10121862 Ga0307515_101218621 390
86 3300031456 Ga0307513_10277844 Ga0307513_102778441 390
87 3300031967 Ga0315914_1010517 Ga0315914_10105175 390
88 3300033430 Ga0315913_1000270 Ga0315913_100027044 390
89 3300037471 Ga0395905_0004879 Ga0395905_0004879_7081_8295 390
90 3300041458 Ga0451798_0989485 Ga0451798_0989485_661_1890 390
91 3300041507 Ga0451851_0414805 Ga0451851_0414805_634_1863 390
92 3300041512 Ga0451853_1201066 Ga0451853_1201066_191_1405 390
93 3300041512 Ga0451853_4059526 Ga0451853_4059526_706_1974 390
94 3300048921 Ga0496118_0035497 Ga0496118_0035497_2349_3563 390
95 3300048923 Ga0496120_0059171 Ga0496120_0059171_666_1838 390
96 3300048927 Ga0496124_0017433 Ga0496124_0017433_1761_2933 390
97 3300048929 Ga0496126_0000152 Ga0496126_0000152_91900_93114 390
98 3300049570 Ga0501033_0000054 Ga0501033_0000054_81657_82871 390
99 3300049822 Ga0501035_0001626 Ga0501035_0001626_8401_9615 390
100 3300050491 nmdc:mga00v17_85_c1 nmdc:mga00v17_85_c1_9382_10596 390
101 3300053136 Ga0500559_0003955 Ga0500559_0003955_2487_3701 390
102 3300053153 Ga0500616_0000108 Ga0500616_0000108_150466_151638 390
103 3300053156 Ga0500622_0001073 Ga0500622_0001073_12220_13434 390
104 3300053177 Ga0500636_0000091 Ga0500636_0000091_32596_33810 390
105 iso_pu_bacteria 2508501122 2509111898 390
106 iso_pu_bacteria 2509276021 2509386520 390
107 iso_pu_bacteria 2509276021 2509392760 390
108 iso_pu_bacteria 2513237084 2513573038 390
109 iso_pu_bacteria 2513237085 2513580883 390
110 iso_pu_bacteria 2513237091 2513621197 390
111 iso_pu_bacteria 2513237093 2513635509 390
112 iso_pu_bacteria 2513237138 2513869934 390
113 iso_pu_bacteria 2513237138 2513870309 390
114 iso_pu_bacteria 2513237144 2513914252 390
115 iso_pu_bacteria 2513237146 2513930119 390
116 iso_pu_bacteria 2513237159 2514000761 390
117 iso_pu_bacteria 2515075009 2515109937 390
118 iso_pu_bacteria 2515154113 2515635667 390
119 iso_pu_bacteria 2517287029 2517411874 390
120 iso_pu_bacteria 2529292951 2530649477 390
121 iso_pu_bacteria 2534681796 2535518009 390
122 iso_pu_bacteria 2551306089 2551709387 390
123 iso_pu_bacteria 2551306089 2551711886 390
124 iso_pu_bacteria 2551306092 2551738584 390
125 iso_pu_bacteria 2582581283 2585168790 390
126 iso_pu_bacteria 2582581283 2585169631 390
127 iso_pu_bacteria 2582581316 2585335919 390
128 iso_pu_bacteria 2585427530 2585555301 390
129 iso_pu_bacteria 2585427593 2585840887 390
130 iso_pu_bacteria 2585427593 2585841000 390
131 iso_pu_bacteria 2585427593 2585841050 390
132 iso_pu_bacteria 2585427633 2585993928 390
133 iso_pu_bacteria 2599185170 2599413961 390
134 iso_pu_bacteria 2643221582 2643918117 390
135 iso_pu_bacteria 2643221607 2644049906 390
136 iso_pu_bacteria 2643221636 2644203310 390
137 iso_pu_bacteria 2643221653 2644300770 390
138 iso_pu_bacteria 2643221655 2644307402 390
139 iso_pu_bacteria 2643221686 2644485120 390
140 iso_pu_bacteria 2643221712 2644613486 390
141 iso_pu_bacteria 2643221719 2644658992 390
142 iso_pu_bacteria 2690316117 2692320861 390
143 iso_pu_bacteria 2718218233 2720617077 390
144 iso_pu_bacteria 2724679232 2725949133 390
145 iso_pu_bacteria 2765235942 2766063886 390
146 iso_pu_bacteria 2791355082 2792579847 390
147 iso_pu_bacteria 2791355094 2792641083 390
148 iso_pu_bacteria 2791355266 2793363148 390
149 iso_pu_bacteria 2802429605 2805931144 390
150 iso_pu_bacteria 2802429606 2805936946 390
151 iso_pu_bacteria 2802429633 2806048247 390
152 iso_pu_bacteria 2802429635 2806063846 390
153 iso_pu_bacteria 2818991448 2819612382 390
154 iso_pu_bacteria 2838035591 2838042530 390
155 iso_pu_bacteria 2838686498 2838691050 390
156 iso_pu_bacteria 2842077413 2842083217 390
157 iso_pu_bacteria 2842110456 2842117288 390
158 iso_pu_bacteria 2842271015 2842275525 390
159 iso_pu_bacteria 2844454524 2844462241 390
160 iso_pu_bacteria 2857516855 2857524531 390
161 iso_pu_bacteria 2915980308 2915983904 390
162 iso_pu_bacteria 2920760137 2920767029 390
163 iso_pu_bacteria 2921237296 2921238508 390
164 iso_pu_bacteria 2923556063 2923562332 390
165 iso_pu_bacteria 2933586486 2933590030 390
166 iso_pu_bacteria 2936367885 2936373867 390
167 iso_pu_bacteria 2937009748 2937014013 390
168 iso_pu_bacteria 2937016420 2937022539 390
169 iso_pu_bacteria 2937036028 2937042826 390
170 iso_pu_bacteria 2937042894 2937047364 390
171 iso_pu_bacteria 2937049772 2937051556 390
172 iso_pu_bacteria 2937056579 2937057667 390
173 iso_pu_bacteria 2937056579 2937062431 390
174 iso_pu_bacteria 2937071275 2937071891 390
175 iso_pu_bacteria 2937091812 2937093783 390
176 iso_pu_bacteria 2937091812 2937094140 390
177 iso_pu_bacteria 2937106411 2937112762 390
178 iso_pu_bacteria 2957430029 2957431398 390
179 iso_pu_bacteria 2957457609 2957459182 390
180 iso_pu_bacteria 2957478035 2957482854 390
181 iso_pu_bacteria 2957498199 2957500069 390
182 iso_pu_bacteria 2957498199 2957504744 390
183 iso_pu_bacteria 2960652885 2960654468 390
184 iso_pu_bacteria 2960652885 2960654911 390
185 iso_pu_bacteria 2960680706 2960684481 390
186 iso_pu_bacteria 2964607997 2964608401 390
187 iso_pu_bacteria 2964607997 2964610274 390
188 iso_pu_bacteria 2964636051 2964642136 390
189 iso_pu_bacteria 2964656573 2964657041 390
190 iso_pu_bacteria 2964656573 2964658014 390
191 iso_pu_bacteria 2964705432 2964706409 390
192 iso_pu_bacteria 2967664464 2967665361 390
193 iso_pu_bacteria 2967762386 2967763395 390
194 iso_pu_bacteria 2967775926 2967777690 390
195 iso_pu_bacteria 2970040964 2970046004 390
196 iso_pu_bacteria 2970184632 2970185639 390
197 iso_pu_bacteria 2970184632 2970186204 390
198 iso_pu_bacteria 2977530762 2977531308 390
199 iso_pu_bacteria 2977579622 2977584750 390
200 iso_pu_bacteria 2989349275 2989350718 390
201 iso_pu_bacteria 3005416602 3005418221 390
202 iso_pu_bacteria 8003570095 8003574988 390
203 iso_pu_bacteria 8003992118 8003998648 390
204 iso_pu_bacteria 8005258706 8005259872 390
205 iso_pu_bacteria 8005289223 8005293778 390
206 iso_pu_bacteria 8005314921 8005316171 390
207 iso_pu_bacteria 8005460587 8005465756 390
208 iso_pu_bacteria 8005484373 8005488187 390
209 iso_pu_bacteria 8005542996 8005548878 390
210 iso_pu_bacteria 8005570704 8005571470 390
211 iso_pu_bacteria 8005645114 8005645574 390
212 iso_pu_bacteria 8023680758 8023684864 390
213 iso_pu_bacteria 8046767195 8046770045 390
214 iso_pu_bacteria 8049293176 8049298805 390
215 iso_pu_bacteria 8057575449 8057581447 390
216 iso_pu_bacteria 8057575449 8057581737 390

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03428

RP-C

Replication protein C N-terminal domain

13

187

0.98

PF11800

RP-C_C

Replication protein C C-terminal region

281

382

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
1jhh-assembly1.cif.gz_A lexa s119a mutant 0.7708 39 127
1jhf-assembly1.cif.gz_A lexa g85d mutant 0.7443 39 127
3jso-assembly1.cif.gz_A classic protein with a new twist: crystal structure of a lexa repressor dna complex 0.7049 39 127
5kbj-assembly1.cif.gz_C structure of rep-dna complex 0.7005 39 102
3jsp-assembly1.cif.gz_B classic protein with a new twist: crystal structure of a lexa repressor dna complex 0.692 39 127
ID Description Score Start End Superfamily
1jhhA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7708 39 127 1.10.10.10
af_P9WHR7_25_91_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7514 39 106 1.10.10.10
1jhhA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7254 39 127 1.10.10.10
af_A4I182_63_164_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.711 42 108 1.10.10.10
af_P9WN87_5_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.6937 30 126 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A434MHR2-F1-model_v4 Replication initiation protein RepC 0.9718 1 149
AF-Q9EVK1-F1-model_v4 Replication protein 0.9682 22 216
AF-Q9EVK1-F1-model_v4 Replication protein 0.9586 22 216
AF-Q84G64-F1-model_v4 RepC 0.9559 1 202
AF-A0A163XSY7-F1-model_v4 Plasmid replication protein C C-terminal domain-containing protein 0.9486 285 390

Feature Viewer

pLDDT pTM Quality
84.24 0.52 Medium
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Predicted Structure (AlphaFold2)

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