F325834

General Info

Members Datasets Scaffolds Average Seq Length
214 205 72 518

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2728368998|2728751134
Length 600
Sequence ERRHSIFDFANERFWQFAILTAAGTIGASTQADAALYYWNGPDSAYYGEPEPMLPPQPHRQKVRRNPVKKEPVAAKETAAKPQGPLIIAISIDQQKVRLYDVNGLYAESPVSTGMKGHLTPMGVFSVIQKQKYHRSNIYSGAPMPYMQRITWSGIAMHAGVLPGYPASHGCIRMPTGFAVKMYNWTRMGARVVVTPGTITPENFSHPLLVTQKVVPSQPVADDLLKKDAPLGVKGDKGADKPETSIELRSTVGHADQPGSLRDNTHTADASGTMPSASASVTMSDVAGAAIADKSEEASAATAGDAKPDARAASDKPETAADKPADTKSADAASNDKTVGETSVTGSVESANSEVSASDRVKAEVKADAPKPDAKVAGADAPKVDATKATVTADAPKADAAKVADKTADKPADNASDKPAAPATAADAPDAKKDPTRLPGVASIDVPKRTGQIAVFISRKDSKLYVRQNFAPLFEVPVTIAPSDRPLGTHIFTAEADKKDPNALRWSVISLPMSARNAARVEARERISHRRKMAGAAEIEAKPLPLSDSPAEALDRITIPADAMARINDALGTGGSIIVSDLGVNQGETGEGTDFIVPLR

Samples

Sample ID Description Type Environment
1 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
2 2513237094 Bradyrhizobium sp. WSM3983 Isolate Nodule
3 2513237095 Bradyrhizobium diazoefficiens USDA 122 Isolate Nodule
4 2513237096 Bradyrhizobium pachyrhizi USDA 3259 Isolate Nodule
5 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
6 2513237101 Bradyrhizobium murdochi WSM1741 Isolate Nodule
7 2513237102 Bradyrhizobium japonicum USDA 135 Isolate Nodule
8 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
9 2513237139 Bradyrhizobium ottawaense USDA 4 Isolate Nodule
10 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
11 2513237161 Bradyrhizobium sp. WSM2793 Isolate Nodule
12 2517093001 Bradyrhizobium japonicum USDA 124 Isolate Nodule
13 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
14 2524023205 Bradyrhizobium sp. Cp5.3 Isolate Nodule
15 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
16 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
17 2528768022 Bradyrhizobium japonicum USDA 123 Isolate Nodule
18 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
19 2617270735 Bradyrhizobium shewense ERR11 Isolate Nodule
20 2617270741 Bradyrhizobium yuanmingense CCBAU 10071 Isolate Nodule
21 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
22 2721755755 Bradyrhizobium icense LMTR 13 Isolate Nodule
23 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
24 2791355196 Bradyrhizobium sp. Y36 Isolate Nodule
25 2791355199
26 2802429603 Bradyrhizobium ottawaense L2 Isolate Nodule
27 2816332527 Bradyrhizobium diazoefficiens Y21 Isolate Nodule
28 2824600985 Bradyrhizobium sp.HAMBI 2135 Isolate Unclassified
29 2824609381 Bradyrhizobium sp. HAMBI 2134 Isolate Unclassified
30 2824617872 Bradyrhizobium sp. HAMBI 2133 Isolate Unclassified
31 2824626560 Bradyrhizobium sp. HAMBI 2149 Isolate Unclassified
32 2824635225 Bradyrhizobium sp. HAMBI 2136 Isolate Unclassified
33 2824644064 Bradyrhizobium sp. HAMBI 2137 Isolate Unclassified
34 2824653114 Bradyrhizobium sp. HAMBI 2142 Isolate Unclassified
35 2824661429 Bradyrhizobium sp. HAMBI 2115 Isolate Unclassified
36 2824671348 Bradyrhizobium sp. HAMBI 2125 Isolate Unclassified
37 2824696289 Bradyrhizobium sp. HAMBI 2127 Isolate Unclassified
38 2824714736 Bradyrhizobium sp. HAMBI 2151 Isolate Unclassified
39 2824723954 Bradyrhizobium sp. HAMBI 2152 Isolate Unclassified
40 2824732956 Bradyrhizobium sp. HAMBI 2153 Isolate Unclassified
41 2824746037 Bradyrhizobium sp. HAMBI 2299 Isolate Unclassified
42 2824773399 Bradyrhizobium sp. HAMBI 2130 Isolate Unclassified
43 2838122688 Bradyrhizobium sp. CIR3A Isolate Nodule
44 2841941048 Bradyrhizobium sp. SBR1B Isolate Nodule
45 2841949485 Bradyrhizobium sp. ERR14 Isolate Nodule
46 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
47 2841966195 Bradyrhizobium sp. CIR18 Isolate Nodule
48 2841974524 Bradyrhizobium sp. CIR48 Isolate Nodule
49 2841983080 Bradyrhizobium sp. IAR9 Isolate Nodule
50 2842038055 Bradyrhizobium centrosematis SEMIA 424 Isolate Nodule
51 2842045827 Bradyrhizobium centrosematis SEMIA 431 Isolate Nodule
52 2844315083 Bradyrhizobium guangzhouense CCBAU 51670 Isolate Unclassified
53 2847930680 Bradyrhizobium zhanjiangense CCBAU 51778 Isolate Unclassified
54 2847939898 Bradyrhizobium ottawaense OO99 Isolate Unclassified
55 2857509624 Bradyrhizobium sp. R-73088 Isolate Unclassified
56 2874604998 Bradyrhizobium sp. LMTR 3 Isolate Nodule
57 2874628541 Bradyrhizobium betae Opo-243 Isolate Unclassified
58 2879099564 Bradyrhizobium japonicum UBMA197 Isolate Nodule
59 2881665667 Bradyrhizobium vignae LMG 28791 Isolate Unclassified
60 2885366525 Bradyrhizobium sp. LVM 105 Isolate Unclassified
61 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
62 2885383462 Bradyrhizobium sp. Leo170 Isolate Unclassified
63 2885409591 Bradyrhizobium sp. NAS80.1 Isolate Unclassified
64 2888378607 Bradyrhizobium sp. LCT2 Isolate Unclassified
65 2888419890 Bradyrhizobium sp. 1(2017) 63S1MB Isolate Unclassified
66 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
67 2903727486 Bradyrhizobium guangzhouense CCBAU 53424 Isolate Unclassified
68 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
69 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
70 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
71 2904699407
72 2906602504 Bradyrhizobium guangzhouense CCBAU 53426 Isolate Unclassified
73 2906610324
74 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified
75 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
76 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
77 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
78 2922368715
79 2922386360 Bradyrhizobium archetypum WSM 1744 Isolate Nodule
80 2922425934
81 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
82 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
83 2932784394 Bradyrhizobium sp. S3.2.12 Isolate Nodule
84 2932809354 Bradyrhizobium sp. S3.5.5 Isolate Nodule
85 2932818245 Bradyrhizobium sp. S3.9.1 Isolate Nodule
86 2932828146 Bradyrhizobium sp. S3.9.2 Isolate Nodule
87 2933577622 Bradyrhizobium japonicum SEMIA 417 Isolate Nodule
88 2935616580 Bradyrhizobium sp. RT7a Isolate Nodule
89 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
90 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
91 2935665750 Bradyrhizobium sp. JR7.2 Isolate Nodule
92 2935675223 Bradyrhizobium sp. LA2.1 Isolate Nodule
93 2935684952 Bradyrhizobium sp. LA3.X Isolate Nodule
94 2935694250 Bradyrhizobium sp. LA6.1 Isolate Nodule
95 2935703347 Bradyrhizobium sp. LA6.10 Isolate Nodule
96 2935713505 Bradyrhizobium sp. LA6.12 Isolate Nodule
97 2935722832 Bradyrhizobium sp. LA6.3 Isolate Nodule
98 2935732158 Bradyrhizobium sp. LA6.4 Isolate Nodule
99 2935741537 Bradyrhizobium sp. LA6.7 Isolate Nodule
100 2935750917 Bradyrhizobium sp. LA6.8 Isolate Nodule
101 2935760218 Bradyrhizobium sp. LA7.1 Isolate Nodule
102 2935801545 Bradyrhizobium sp. RT10b Isolate Nodule
103 2935810662 Bradyrhizobium sp. RT3a Isolate Nodule
104 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
105 2935837841 Bradyrhizobium sp. RT4b Isolate Nodule
106 2935855204 Bradyrhizobium sp. RT7b Isolate Nodule
107 2935864058 Bradyrhizobium sp. RT9a Isolate Nodule
108 2935873716 Bradyrhizobium sp. RT9b Isolate Nodule
109 2935959822 Bradyrhizobium sp. F1.4.3 Isolate Nodule
110 2935992306 Bradyrhizobium sp. I1.7.5 Isolate Nodule
111 2936002035 Bradyrhizobium sp. I1.8.5 Isolate Nodule
112 2936037263 Bradyrhizobium sp. JR18.2 Isolate Nodule
113 2940556831 Bradyrhizobium sp. LA8.1 Isolate Nodule
114 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
115 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
116 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
117 2941531003 Bradyrhizobium sp. LB11.1 Isolate Nodule
118 2941538514 Bradyrhizobium sp. RT11b Isolate Nodule
119 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
120 3005483717 Bradyrhizobium agreste CNPSo 4010 Isolate Unclassified
121 3005506211 Bradyrhizobium diazoefficiens SZCCT0449 Isolate Unclassified
122 3005587118 Bradyrhizobium glycinis CNPSo 4016 Isolate Unclassified
123 3005594810 Bradyrhizobium sp. CCBAU 53340 Isolate Nodule
124 3005710791 Bradyrhizobium genosp. B BDV5040 Isolate Unclassified
125 3005718088 Bradyrhizobium sp. CCBAU 53338 Isolate Nodule
126 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
127 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
128 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
129 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
130 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
131 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
132 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
133 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
134 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
135 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
136 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
137 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
138 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
139 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
140 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
141 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
142 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
143 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
144 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
145 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
146 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
147 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
148 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
149 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
150 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
151 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
152 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
153 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
154 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
155 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
156 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
157 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
158 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
159 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
160 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
161 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
162 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
163 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
164 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
165 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
166 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
167 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
168 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
169 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
170 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
171 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
172 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
173 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
174 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
175 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
176 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
177 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
178 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
179 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
180 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
181 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
182 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
183 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
184 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
185 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
186 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
187 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
188 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
189 3300053737 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere Metagenome Endosphere
190 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
191 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
192 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
193 8006994254 Bradyrhizobium sp. sGM-13 Isolate Nodule
194 8016511872 Bradyrhizobium sp. S3.14.4 Isolate Nodule
195 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule
196 8017057580 Bradyrhizobium sp. S3.7.6 Isolate Nodule
197 8019555841 Bradyrhizobium sp. JR6.1 Isolate Nodule
198 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule
199 8019576017 Bradyrhizobium sp. i1.7.7 Isolate Nodule
200 8019586578 Bradyrhizobium sp. i1.4.4 Isolate Nodule
201 8019597564 Bradyrhizobium sp. i1.3.6 Isolate Nodule
202 8019608314 Bradyrhizobium sp. i1.3.1 Isolate Nodule
203 8055742211 Bradyrhizobium japonicum 5038 Isolate Nodule
204 8056681323 Bradyrhizobium cenepequi CNPSo 4026 Isolate Nodule
205 8056689827 Bradyrhizobium semiaridum WSM 1704 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 34.62
Metatranscriptomes 0
Isolates 65.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.67
Nodule 50.93
Rhizoplane 4.67
Rhizosphere 13.55
Stem 0
Stem Tuber 0
Unclassified 26.17

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070709_10004487 3300005434 Bacteria 7531
2 Ga0070713_100006596 3300005436 Bacteria 8065
3 Ga0070711_100016701 3300005439 Bacteria 4664
4 Ga0070663_100002929 3300005455 Bacteria 9711
5 Ga0070681_10011972 3300005458 Bacteria 8602
6 Ga0070665_100075597 3300005548 Bacteria 3375
7 Ga0068854_100045752 3300005578 Bacteria 3113
8 Ga0068858_100092035 3300005842 Bacteria 2822
9 Ga0068860_100000058 3300005843 Bacteria 197181
10 Ga0075363_100007190 3300006048 Bacteria 5100
11 Ga0075370_10007510 3300006353 Bacteria 5555
12 Ga0075370_10030455 3300006353 Bacteria 3011
13 Ga0099824_1008229 3300006942 Bacteria 13429
14 Ga0099822_1000080 3300006943 Bacteria 54304
15 Ga0099822_1036510 3300006943 Bacteria 3078
16 Ga0105237_10005643 3300009545 Bacteria 14090
17 Ga0163163_10133333 3300014325 Bacteria 2524
18 Ga0214544_1000002 3300021320 Bacteria 753857
19 Ga0214542_1000001 3300021321 Bacteria 1018696
20 Ga0214545_1000001 3300021324 Bacteria 1092817
21 Ga0214543_1000001 3300021327 Bacteria 776921
22 Ga0209233_1001265 3300025261 Bacteria 10149
23 Ga0209758_1006261 3300025297 Bacteria 8662
24 Ga0207707_10014023 3300025912 Bacteria 6986
25 Ga0207671_10029570 3300025914 Bacteria 4091
26 Ga0207693_10019789 3300025915 Bacteria 5351
27 Ga0209389_1000081 3300027296 Bacteria 89601
28 Ga0209589_1000003 3300027357 Bacteria 629130
29 Ga0209589_1000091 3300027357 Bacteria 89601
30 Ga0209489_100003 3300027361 Bacteria 663105
31 Ga0209489_100096 3300027361 Bacteria 122075
32 Ga0209700_100003 3300027363 Bacteria 663105
33 Ga0268266_10004442 3300028379 Bacteria 13419
34 Ga0268264_10000022 3300028381 Bacteria 476624
35 Ga0265342_10012169 3300031712 Bacteria 5837
36 Ga0395900_0076718 3300037418 Bacteria 3434
37 Ga0436365_1112504 3300039437 Bacteria 2088
38 Ga0436363_1116028 3300039450 Bacteria 3313
39 Ga0466966_0044159 3300044684 Bacteria 2854
40 Ga0466959_0063040 3300045049 Bacteria 2693
41 Ga0466959_0067306 3300045049 Bacteria 2597
42 Ga0495638_0065038 3300046460 Bacteria 2245
43 Ga0495676_0023675 3300047321 Bacteria 5325
44 Ga0496104_0018886 3300048907 Bacteria 6296
45 Ga0496104_0162755 3300048907 Bacteria 2140
46 Ga0496105_0002442 3300048908 Bacteria 13445
47 Ga0496106_0017964 3300048909 Bacteria 5231
48 Ga0496107_0006460 3300048910 Bacteria 8061
49 Ga0496109_0001422 3300048912 Bacteria 19864
50 Ga0496112_0003647 3300048915 Bacteria 12826
51 Ga0496115_0013365 3300048918 Bacteria 6211
52 Ga0496116_0001763 3300048919 Bacteria 23588
53 Ga0496118_0055021 3300048921 Bacteria 3007
54 Ga0496119_0007609 3300048922 Bacteria 9716
55 Ga0496120_0018412 3300048923 Bacteria 4503
56 Ga0496121_0011976 3300048924 Bacteria 9536
57 Ga0496122_0021778 3300048925 Bacteria 5721
58 Ga0496125_0018431 3300048928 Bacteria 6630
59 Ga0496125_0064827 3300048928 Bacteria 2899
60 Ga0496126_0011092 3300048929 Bacteria 9363
61 Ga0496126_0094388 3300048929 Bacteria 2625
62 Ga0501033_0013872 3300049570 Bacteria 6131
63 Ga0501037_0008746 3300049573 Bacteria 7421
64 Ga0501038_0016381 3300049574 Bacteria 6718
65 Ga0501039_0159027 3300049575 Bacteria 1775
66 Ga0501046_0045269 3300049580 Bacteria 3497
67 Ga0501048_0012334 3300049582 Bacteria 6359
68 nmdc:mga03n38_33033_c1 3300050490 Bacteria 2198
69 nmdc:mga07m45_9061_c1 3300050496 Bacteria 5142
70 nmdc:mga0sz30_21683_c1 3300050516 Bacteria 2602
71 Ga0500652_000276 3300053131 Bacteria 19061
72 Ga0500601_000110 3300053737 Bacteria 17091

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2824635225 2824643539 358
2 iso_pu_bacteria 2824714736 2824722900 359
3 iso_pu_bacteria 8019597564 8019600844 359
4 iso_pu_bacteria 2824626560 2824635059 360
5 iso_pu_bacteria 2824723954 2824732006 360
6 iso_pu_bacteria 2824617872 2824626317 361
7 iso_pu_bacteria 2824644064 2824651974 361
8 3300049570 Ga0501033_0013872 Ga0501033_0013872_4547_6094 375
9 3300049574 Ga0501038_0016381 Ga0501038_0016381_311_1897 375
10 3300049575 Ga0501039_0159027 Ga0501039_0159027_38_1585 375
11 3300049580 Ga0501046_0045269 Ga0501046_0045269_863_2449 375
12 3300049582 Ga0501048_0012334 Ga0501048_0012334_2818_4404 375
13 3300005842 Ga0068858_100092035 Ga0068858_1000920352 377
14 3300049573 Ga0501037_0008746 Ga0501037_0008746_1921_3507 378
15 3300037418 Ga0395900_0076718 Ga0395900_0076718_585_2279 380
16 3300025261 Ga0209233_1001265 Ga0209233_10012655 388
17 3300021320 Ga0214544_1000002 Ga0214544_1000002374 395
18 3300021321 Ga0214542_1000001 Ga0214542_1000001724 395
19 3300021324 Ga0214545_1000001 Ga0214545_1000001790 395
20 3300021327 Ga0214543_1000001 Ga0214543_1000001405 395
21 3300048929 Ga0496126_0094388 Ga0496126_0094388_990_2546 395
22 3300006353 Ga0075370_10030455 Ga0075370_100304552 398
23 3300048924 Ga0496121_0011976 Ga0496121_0011976_4353_6011 399
24 3300025914 Ga0207671_10029570 Ga0207671_100295703 400
25 3300053131 Ga0500652_000276 Ga0500652_000276_2996_4654 402
26 3300053737 Ga0500601_000110 Ga0500601_000110_5955_7679 402
27 3300006942 Ga0099824_1008229 Ga0099824_100822910 404
28 3300006943 Ga0099822_1036510 Ga0099822_10365101 404
29 3300027296 Ga0209389_1000081 Ga0209389_100008133 404
30 3300027357 Ga0209589_1000091 Ga0209589_100009133 404
31 3300027361 Ga0209489_100096 Ga0209489_10009665 404
32 3300047321 Ga0495676_0023675 Ga0495676_0023675_3111_4787 404
33 3300048923 Ga0496120_0018412 Ga0496120_0018412_2715_4391 405
34 3300048928 Ga0496125_0018431 Ga0496125_0018431_1569_3233 405
35 3300048907 Ga0496104_0018886 Ga0496104_0018886_2770_4434 406
36 3300048908 Ga0496105_0002442 Ga0496105_0002442_5460_7124 406
37 3300048922 Ga0496119_0007609 Ga0496119_0007609_5463_7127 406
38 3300048929 Ga0496126_0011092 Ga0496126_0011092_2237_3901 406
39 3300048921 Ga0496118_0055021 Ga0496118_0055021_733_2394 407
40 3300048928 Ga0496125_0064827 Ga0496125_0064827_481_2142 407
41 3300050516 nmdc:mga0sz30_21683_c1 nmdc:mga0sz30_21683_c1_316_1977 407
42 3300048919 Ga0496116_0001763 Ga0496116_0001763_10363_12024 408
43 3300009545 Ga0105237_10005643 Ga0105237_100056437 410
44 3300005455 Ga0070663_100002929 Ga0070663_10000292910 413
45 3300005548 Ga0070665_100075597 Ga0070665_1000755972 413
46 3300006048 Ga0075363_100007190 Ga0075363_1000071907 413
47 3300006353 Ga0075370_10007510 Ga0075370_100075108 413
48 3300014325 Ga0163163_10133333 Ga0163163_101333332 413
49 3300028379 Ga0268266_10004442 Ga0268266_1000444211 413
50 3300048907 Ga0496104_0162755 Ga0496104_0162755_151_1854 413
51 3300048918 Ga0496115_0013365 Ga0496115_0013365_1123_2826 413
52 3300050490 nmdc:mga03n38_33033_c1 nmdc:mga03n38_33033_c1_337_2040 413
53 3300050496 nmdc:mga07m45_9061_c1 nmdc:mga07m45_9061_c1_2365_4068 413
54 3300039437 Ga0436365_1112504 Ga0436365_1112504_161_1843 415
55 3300005843 Ga0068860_100000058 Ga0068860_100000058213 418
56 3300028381 Ga0268264_10000022 Ga0268264_10000022456 418
57 3300025297 Ga0209758_1006261 Ga0209758_10062614 419
58 iso_pu_bacteria 2885374607 2885380516 420
59 iso_pu_bacteria 2908739725 2908742630 420
60 iso_pu_bacteria 2922386360 2922391020 420
61 iso_pu_bacteria 2874628541 2874631917 421
62 iso_pu_bacteria 2922425934 2922430349 423
63 3300048909 Ga0496106_0017964 Ga0496106_0017964_2462_4093 424
64 3300048910 Ga0496107_0006460 Ga0496107_0006460_2126_3757 424
65 3300048912 Ga0496109_0001422 Ga0496109_0001422_17641_19272 424
66 3300048915 Ga0496112_0003647 Ga0496112_0003647_643_2274 424
67 iso_pu_bacteria 2824671348 2824678344 426
68 3300031712 Ga0265342_10012169 Ga0265342_100121694 427
69 3300046460 Ga0495638_0065038 Ga0495638_0065038_341_1978 427
70 3300048925 Ga0496122_0021778 Ga0496122_0021778_2106_3743 427
71 iso_pu_bacteria 2513237102 2513704397 427
72 iso_pu_bacteria 2904690495 2904695884 427
73 iso_pu_bacteria 2906610324 2906618690 429
74 3300044684 Ga0466966_0044159 Ga0466966_0044159_589_2469 430
75 iso_pu_bacteria 2841957949 2841958722 430
76 iso_pu_bacteria 2908756301 2908761186 430
77 3300039450 Ga0436363_1116028 Ga0436363_1116028_558_2216 431
78 iso_pu_bacteria 2617270735 2617347459 431
79 iso_pu_bacteria 2802429603 2805915279 431
80 iso_pu_bacteria 2824696289 2824703112 431
81 iso_pu_bacteria 2824773399 2824779599 431
82 iso_pu_bacteria 2847939898 2847946620 431
83 iso_pu_bacteria 2904699407 2904703516 431
84 iso_pu_bacteria 2904699407 2904703947 431
85 iso_pu_bacteria 2941531003 2941532876 431
86 iso_pu_bacteria 2513237139 2513872823 432
87 iso_pu_bacteria 2513237161 2514013584 432
88 iso_pu_bacteria 2517093001 2517106821 432
89 iso_pu_bacteria 2838122688 2838123684 432
90 iso_pu_bacteria 2841941048 2841949064 432
91 iso_pu_bacteria 2841949485 2841949784 432
92 iso_pu_bacteria 2841966195 2841966200 432
93 iso_pu_bacteria 2841974524 2841974939 432
94 iso_pu_bacteria 2841983080 2841983492 432
95 iso_pu_bacteria 2889033259 2889039784 432
96 iso_pu_bacteria 2513237101 2513692582 433
97 iso_pu_bacteria 2824600985 2824605804 433
98 iso_pu_bacteria 2824609381 2824614399 433
99 iso_pu_bacteria 2824653114 2824660565 433
100 iso_pu_bacteria 2857509624 2857514254 433
101 iso_pu_bacteria 8006994254 8006995981 433
102 iso_pu_bacteria 2617270741 2617375713 434
103 iso_pu_bacteria 2824732956 2824739013 434
104 iso_pu_bacteria 2824746037 2824749226 434
105 iso_pu_bacteria 2885409591 2885409593 434
106 iso_pu_bacteria 2888419890 2888424590 434
107 iso_pu_bacteria 2922368715 2922374460 434
108 iso_pu_bacteria 2874604998 2874605251 435
109 iso_pu_bacteria 2903768456 2903773965 435
110 iso_pu_bacteria 3005506211 3005510379 435
111 iso_pu_bacteria 2842038055 2842039009 436
112 iso_pu_bacteria 2842045827 2842048044 436
113 iso_pu_bacteria 2844315083 2844319140 436
114 iso_pu_bacteria 2881665667 2881671214 436
115 iso_pu_bacteria 2885366525 2885373210 436
116 iso_pu_bacteria 2903727486 2903728933 436
117 iso_pu_bacteria 2906602504 2906607149 436
118 iso_pu_bacteria 3005483717 3005484376 436
119 iso_pu_bacteria 3005587118 3005587991 436
120 3300006943 Ga0099822_1000080 Ga0099822_10000806 437
121 3300027357 Ga0209589_1000003 Ga0209589_1000003597 437
122 3300027361 Ga0209489_100003 Ga0209489_100003648 437
123 3300027363 Ga0209700_100003 Ga0209700_100003648 437
124 iso_pu_bacteria 2528768022 2528850021 437
125 iso_pu_bacteria 2824661429 2824669766 437
126 iso_pu_bacteria 2847930680 2847936271 437
127 iso_pu_bacteria 2879099564 2879100518 437
128 iso_pu_bacteria 2929615660 2929618123 437
129 iso_pu_bacteria 2929624759 2929632311 437
130 iso_pu_bacteria 2932784394 2932790417 437
131 iso_pu_bacteria 2932809354 2932810834 437
132 iso_pu_bacteria 2932818245 2932823834 437
133 iso_pu_bacteria 2932828146 2932830047 437
134 iso_pu_bacteria 2933577622 2933580051 437
135 iso_pu_bacteria 2935616580 2935622726 437
136 iso_pu_bacteria 2935638405 2935642474 437
137 iso_pu_bacteria 2935665750 2935668222 437
138 iso_pu_bacteria 2935675223 2935676254 437
139 iso_pu_bacteria 2935684952 2935686331 437
140 iso_pu_bacteria 2935694250 2935701134 437
141 iso_pu_bacteria 2935703347 2935706083 437
142 iso_pu_bacteria 2935713505 2935722334 437
143 iso_pu_bacteria 2935722832 2935731637 437
144 iso_pu_bacteria 2935732158 2935732229 437
145 iso_pu_bacteria 2935741537 2935741608 437
146 iso_pu_bacteria 2935750917 2935752296 437
147 iso_pu_bacteria 2935760218 2935766580 437
148 iso_pu_bacteria 2935801545 2935803081 437
149 iso_pu_bacteria 2935810662 2935814398 437
150 iso_pu_bacteria 2935827899 2935831535 437
151 iso_pu_bacteria 2935837841 2935838396 437
152 iso_pu_bacteria 2935855204 2935860975 437
153 iso_pu_bacteria 2935864058 2935869688 437
154 iso_pu_bacteria 2935873716 2935878893 437
155 iso_pu_bacteria 2935992306 2935994710 437
156 iso_pu_bacteria 2936002035 2936003352 437
157 iso_pu_bacteria 2936037263 2936039954 437
158 iso_pu_bacteria 2940556831 2940556902 437
159 iso_pu_bacteria 2941538514 2941538936 437
160 iso_pu_bacteria 8016511872 8016522273 437
161 iso_pu_bacteria 8017057580 8017063287 437
162 iso_pu_bacteria 8019576017 8019582721 437
163 iso_pu_bacteria 8019586578 8019590508 437
164 iso_pu_bacteria 8019608314 8019617710 437
165 iso_pu_bacteria 8055742211 8055746288 437
166 3300005578 Ga0068854_100045752 Ga0068854_1000457522 438
167 iso_pu_bacteria 2513237094 2513638917 438
168 iso_pu_bacteria 2513237095 2513645780 438
169 iso_pu_bacteria 2816332527 2818238830 438
170 iso_pu_bacteria 2888378607 2888384125 438
171 iso_pu_bacteria 3005710791 3005714969 438
172 iso_pu_bacteria 2524023205 2524437415 440
173 iso_pu_bacteria 2791355196 2793062351 440
174 iso_pu_bacteria 3005718088 3005722374 440
175 3300045049 Ga0466959_0063040 Ga0466959_0063040_594_2285 441
176 iso_pu_bacteria 3005594810 3005599291 442
177 iso_pu_bacteria 8016583857 8016591680 442
178 3300005458 Ga0070681_10011972 Ga0070681_100119722 443
179 3300025912 Ga0207707_10014023 Ga0207707_100140236 443
180 iso_pu_bacteria 2513237098 2513675885 443
181 iso_pu_bacteria 2517572143 2517892335 443
182 iso_pu_bacteria 2935959822 2935965786 443
183 iso_pu_bacteria 8056689827 8056695258 444
184 iso_pu_bacteria 8056681323 8056686707 445
185 3300045049 Ga0466959_0067306 Ga0466959_0067306_400_2280 447
186 iso_pu_bacteria 2602042107 2603859510 447
187 iso_pu_bacteria 2721755755 2723845032 448
188 iso_pu_bacteria 8006964411 8006965796 448
189 iso_pu_bacteria 2513237137 2513855797 450
190 iso_pu_bacteria 3005474847 3005480272 451
191 iso_pu_bacteria 2513237096 2513654782 452
192 iso_pu_bacteria 2513237145 2513915038 452
193 iso_pu_bacteria 2524023228 2524538578 452
194 iso_pu_bacteria 2906635258 2906638870 452
195 iso_pu_bacteria 2906660503 2906666313 452
196 iso_pu_bacteria 8006933436 8006940613 452
197 iso_pu_bacteria 8006973647 8006980302 452
198 iso_pu_bacteria 2885383462 2885386553 453
199 iso_pu_bacteria 2903748898 2903749355 454
200 iso_pu_bacteria 8019555841 8019556681 454
201 iso_pu_bacteria 8019565922 8019568625 454
202 iso_pu_bacteria 2667528175 2671120417 456
203 iso_pu_bacteria 2791355199 2793082101 456
204 iso_pu_bacteria 2935630451 2935631609 456
205 iso_pu_bacteria 2941507105 2941511403 456
206 iso_pu_bacteria 2941515067 2941519104 456
207 iso_pu_bacteria 2941523033 2941526316 456
208 iso_pu_bacteria 2524023210 2524468933 458
209 iso_pu_bacteria 2728368998 2728751134 462
210 iso_pu_bacteria 2508501128 2509150935 465
211 3300005439 Ga0070711_100016701 Ga0070711_1000167014 479
212 3300025915 Ga0207693_10019789 Ga0207693_100197893 479
213 3300005434 Ga0070709_10004487 Ga0070709_100044877 480
214 3300005436 Ga0070713_100006596 Ga0070713_1000065966 480

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03734

YkuD

L,D-transpeptidase catalytic domain

85

194

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2mtz-assembly1.cif.gz_A haddock model of bacillus subtilis l,d-transpeptidase in complex with a peptidoglycan hexamuropeptide 0.865 52 79
8a1m-assembly1.cif.gz_A crystal structure of the transpeptidase ldtmt2 from mycobacterium tuberculosis in complex with maleimide analogue 4 0.8077 331 373
3tur-assembly2.cif.gz_B crystal structure of m. tuberculosis ld-transpeptidase type 2 complexed with a peptidoglycan fragment 0.8076 331 373
5d7h-assembly1.cif.gz_A x-ray crystal structure of l,d transpeptidase 2 from mycobacterium tuberculosis 0.8056 331 373
4qra-assembly1.cif.gz_A structure and specificity of l-d-transpeptidase from mycobacterium tuberculosis and antibiotic resistance: calcium binding promotes dimer formation 0.7997 331 373
ID Description Score Start End Superfamily
6iywC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8086 331 373 2.40.440.10
2j4rB02 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Exopolyphosphatase. Domain 2 0.706 330 355 3.30.420.150
af_A0A0P0XKP1_117_282_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.6573 54 78 3.40.50.300
4lpqA02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.6123 325 375 2.40.440.10
af_Q0DEY7_61_348_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6046 61 98 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A1J5P543-F1-model_v4 Uncharacterized protein 0.7672 319 480
AF-A0A2S5LEG1-F1-model_v4 L,D-transpeptidase 0.7471 330 480
AF-A0A4P5THT2-F1-model_v4 Uncharacterized protein 0.7419 330 477
AF-A0A1J5P543-F1-model_v4 Uncharacterized protein 0.7417 319 480
AF-A0A160UWC8-F1-model_v4 deleted 0.6756 304 480

Feature Viewer

pLDDT pTM Quality
55.24 0.54 Medium
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Predicted Structure (AlphaFold2)

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