F325043

General Info

Members Datasets Scaffolds Average Seq Length
214 133 428 476

Family's Representative Sequence

Representative Sequence 3300006028|Ga0070717_10168725|Ga0070717_101687252
Length 503
Sequence VSSAPDCEQGMSTTKNTPSGQNDKVEEYDLVILGGGTGSTIAAWTFAGQEQRVAVIDRKYIGGSCPNIACLPSKNIIHSAKVASYVRRSEEFGIVRDNFKIDMSAVRGRKRAMVSGLNELYLDNYKKTGAEFICGAGRFIGQRTVEATLRDGTKRQLRGANVIISTGTRAVLDSTPGLADAQPLTHVEALELDEVPEHLLVIGGGYVGVELSQAMRRFGSKVSVIERNDRLLHREDEDVTEELGRLFEHEGIDALLNSKIKRVSGKSGSSVKFVVEQNGVEKTLEGSHVLVAAGRTPNTEGLGLELAGVELTDRGYVKVNERLQTTAPGVWTIGEVGGSPQFTHISVDDFRVVRDNLAGCNHVTTGRQVPFCLFTDPEFARIGLSEKEAEAQGIAYRLFKIPMEAVLRARTLSETRGFLKALVEPNGDRILGFTAFAVDGGEIMSSVQIAMIAGLPYTALRDAILAHPTLAEGLETLFSSEPTTLKPQHESPLARARRESVPT

Samples

Sample ID Description Type Environment
1 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
43 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
44 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
45 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
46 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
47 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
65 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
66 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
67 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
68 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
69 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
72 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
73 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
78 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
79 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
80 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
81 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
82 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
83 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
84 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
85 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
86 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
87 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
88 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
89 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
90 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
91 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
92 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
93 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
96 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
97 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
98 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
99 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
100 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
101 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
102 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
103 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
104 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
105 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
106 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
107 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
108 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
113 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
114 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
115 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
116 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
123 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
124 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
125 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
126 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
127 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
128 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
129 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
130 2903768456 Bradyrhizobium sp. Leo121 Isolate Unclassified
131 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
132 8016613128 Bradyrhizobium sp. LB7.1 Isolate Nodule
133 8019538911 Bradyrhizobium sp. LB9.1b Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 97.2
Metatranscriptomes 0.47
Isolates 2.34

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.8
Nodule 1.87
Rhizoplane 4.67
Rhizosphere 85.05
Stem 0
Stem Tuber 0
Unclassified 5.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070717_10168725 3300006028 Bacteria 1902
2 rootH2_10019082 3300003320 Bacteria 6452
3 rootH2_10053814 3300003320 Bacteria 7551
4 JGI25160J50197_1000018 3300003354 Bacteria 239933
5 Ga0065712_10011040 3300005290 Bacteria 4051
6 Ga0070691_10005115 3300005341 Bacteria 5960
7 Ga0070709_10029694 3300005434 Bacteria 3273
8 Ga0070711_100029967 3300005439 Bacteria 3597
9 Ga0070711_100054770 3300005439 Bacteria 2753
10 Ga0070694_100079102 3300005444 Bacteria 2282
11 Ga0070708_100006112 3300005445 Bacteria 9581
12 Ga0070708_100036717 3300005445 Bacteria 4274
13 Ga0070708_100059318 3300005445 Bacteria 3411
14 Ga0070708_100155574 3300005445 Bacteria 2128
15 Ga0070663_100019529 3300005455 Bacteria 4469
16 Ga0070678_100056613 3300005456 Bacteria 2869
17 Ga0070706_100002310 3300005467 Bacteria 19275
18 Ga0070706_100180234 3300005467 Bacteria 1972
19 Ga0070706_100186656 3300005467 Bacteria 1937
20 Ga0070707_100024940 3300005468 Bacteria 5669
21 Ga0070707_100029314 3300005468 Bacteria 5240
22 Ga0070707_100057463 3300005468 Bacteria 3732
23 Ga0070707_100204469 3300005468 Bacteria 1925
24 Ga0070698_100010025 3300005471 Bacteria 10122
25 Ga0070698_100010569 3300005471 Bacteria 9839
26 Ga0070698_100053218 3300005471 Bacteria 4115
27 Ga0070698_100140192 3300005471 Bacteria 2369
28 Ga0070698_100198268 3300005471 Unclassified 1943
29 Ga0070699_100004626 3300005518 Bacteria 12174
30 Ga0070699_100028698 3300005518 Bacteria 4798
31 Ga0070697_100018241 3300005536 Bacteria 5532
32 Ga0070697_100070344 3300005536 Bacteria 2868
33 Ga0070697_100145777 3300005536 Unclassified 1992
34 Ga0070695_100014887 3300005545 Bacteria 4692
35 Ga0070665_100000402 3300005548 Bacteria 63283
36 Ga0070665_100031707 3300005548 Bacteria 5319
37 Ga0070665_100041104 3300005548 Bacteria 4647
38 Ga0070704_100056724 3300005549 Bacteria 2782
39 Ga0068856_100239923 3300005614 Bacteria 1828
40 Ga0068852_100070544 3300005616 Bacteria 3066
41 Ga0068863_100257375 3300005841 Bacteria 1687
42 Ga0081455_10008969 3300005937 Bacteria 10332
43 Ga0081455_10014819 3300005937 Bacteria 7607
44 Ga0081455_10023206 3300005937 Bacteria 5778
45 Ga0081455_10090111 3300005937 Bacteria 2487
46 Ga0081540_1000017 3300005983 Bacteria 164991
47 Ga0081540_1001277 3300005983 Bacteria 21964
48 Ga0081540_1002241 3300005983 Bacteria 15920
49 Ga0081540_1004487 3300005983 Bacteria 10613
50 Ga0081540_1029681 3300005983 Bacteria 3041
51 Ga0081540_1043848 3300005983 Bacteria 2289
52 Ga0081540_1062846 3300005983 Bacteria 1760
53 Ga0070717_10001720 3300006028 Bacteria 15262
54 Ga0070717_10060017 3300006028 Plasmid 3148
55 Ga0070712_100026609 3300006175 Bacteria 3855
56 Ga0075428_100161683 3300006844 Bacteria 2430
57 Ga0075428_100182379 3300006844 Bacteria 2272
58 Ga0075431_100120604 3300006847 Bacteria 2706
59 Ga0075434_100002395 3300006871 Bacteria 16450
60 Ga0075434_100048102 3300006871 Bacteria 4232
61 Ga0075429_100078781 3300006880 Bacteria 2872
62 Ga0105240_10096319 3300009093 Bacteria 3606
63 Ga0105247_10014920 3300009101 Bacteria 4657
64 Ga0114129_10000466 3300009147 Bacteria 48604
65 Ga0114129_10068196 3300009147 Bacteria 4960
66 Ga0114129_10219060 3300009147 Bacteria 2569
67 Ga0105243_10010617 3300009148 Bacteria 6990
68 Ga0105242_10114133 3300009176 Bacteria 2308
69 Ga0105248_10003945 3300009177 Bacteria 16406
70 Ga0105248_10257487 3300009177 Bacteria 1965
71 Ga0105238_10079831 3300009551 Bacteria 3261
72 Ga0105249_10052723 3300009553 Bacteria 3716
73 Ga0157369_10016648 3300013105 Bacteria 8266
74 Ga0157369_10058521 3300013105 Bacteria 4157
75 Ga0157369_10131731 3300013105 Bacteria 2649
76 Ga0157378_10000811 3300013297 Bacteria 29043
77 Ga0157378_10169286 3300013297 Bacteria 2048
78 Ga0163162_10013916 3300013306 Bacteria 7857
79 Ga0163162_10016261 3300013306 Bacteria 7274
80 Ga0163162_10139792 3300013306 Unclassified 2534
81 Ga0157372_10008848 3300013307 Bacteria 10695
82 Ga0157372_10012577 3300013307 Bacteria 9013
83 Ga0213872_10029703 3300021361 Bacteria 2507
84 Ga0213872_10048912 3300021361 Unclassified 1921
85 Ga0213875_10032729 3300021388 Bacteria 2456
86 Ga0213871_10002703 3300021441 Bacteria 3306
87 Ga0228598_1000673 3300024227 Bacteria 7210
88 Ga0209233_1001010 3300025261 Bacteria 12016
89 Ga0209455_1010056 3300025272 Bacteria 2434
90 Ga0207697_10009145 3300025315 Bacteria 4292
91 Ga0207642_10005900 3300025899 Unclassified 4034
92 Ga0207710_10026391 3300025900 Bacteria 2510
93 Ga0207685_10025104 3300025905 Bacteria 2053
94 Ga0207699_10086791 3300025906 Bacteria 1955
95 Ga0207684_10002010 3300025910 Bacteria 20950
96 Ga0207684_10008588 3300025910 Bacteria 9082
97 Ga0207684_10016418 3300025910 Bacteria 6356
98 Ga0207684_10025429 3300025910 Bacteria 5044
99 Ga0207684_10124601 3300025910 Bacteria 2210
100 Ga0207684_10182314 3300025910 Bacteria 1811
101 Ga0207695_10079660 3300025913 Bacteria 3319
102 Ga0207693_10002961 3300025915 Bacteria 14698
103 Ga0207693_10010462 3300025915 Bacteria 7528
104 Ga0207646_10013382 3300025922 Bacteria 7850
105 Ga0207646_10042607 3300025922 Bacteria 4077
106 Ga0207646_10136199 3300025922 Bacteria 2211
107 Ga0207700_10060161 3300025928 Bacteria 2876
108 Ga0207664_10022947 3300025929 Bacteria 4669
109 Ga0207664_10109381 3300025929 Bacteria 2296
110 Ga0207709_10005926 3300025935 Bacteria 6896
111 Ga0207691_10082776 3300025940 Bacteria 2882
112 Ga0207658_10153080 3300025986 Bacteria 1881
113 Ga0207678_10074184 3300026067 Bacteria 2915
114 Ga0268266_10000210 3300028379 Bacteria 101178
115 Ga0268266_10143647 3300028379 Bacteria 2143
116 Ga0268266_10172798 3300028379 Bacteria 1962
117 Ga0265338_10050879 3300028800 Bacteria 3739
118 Ga0307511_10001904 3300030521 Bacteria 21903
119 Ga0265760_10003908 3300031090 Unclassified 4309
120 Ga0265320_10007592 3300031240 Bacteria 6720
121 Ga0373926_0009908 3300035083 Bacteria 3189
122 Ga0373943_0016705 3300035170 Bacteria 3350
123 Ga0373927_0001578 3300035695 Bacteria 17084
124 Ga0373927_0001933 3300035695 Bacteria 15296
125 Ga0373933_0003435 3300035724 Bacteria 8820
126 Ga0373947_0000962 3300035725 Bacteria 17559
127 Ga0373937_0000214 3300036401 Bacteria 55908
128 Ga0373937_0001742 3300036401 Bacteria 18310
129 Ga0373925_0000097 3300037068 Bacteria 94132
130 Ga0373925_0084224 3300037068 Bacteria 2423
131 Ga0395900_0233201 3300037418 Bacteria 1850
132 Ga0395905_0021903 3300037471 Bacteria 6044
133 Ga0436364_0010655 3300037853 Bacteria 10269
134 Ga0436365_0765828 3300039437 Bacteria 5282
135 Ga0436360_0220241 3300039438 Bacteria 2644
136 Ga0436360_0832437 3300039438 Bacteria 6346
137 Ga0436360_1047660 3300039438 Bacteria 13444
138 Ga0436360_1081954 3300039438 Bacteria 9246
139 Ga0436360_1152340 3300039438 Unclassified 3201
140 Ga0436361_0188289 3300039447 Bacteria 5410
141 Ga0436361_0277619 3300039447 Unclassified 3337
142 Ga0436361_0287987 3300039447 Bacteria 15039
143 Ga0436361_0993612 3300039447 Bacteria 3127
144 Ga0436361_1045207 3300039447 Unclassified 2737
145 Ga0436361_1050030 3300039447 Bacteria 2645
146 Ga0436361_1062700 3300039447 Bacteria 5781
147 Ga0436361_1106859 3300039447 Bacteria 1916
148 Ga0436361_1181291 3300039447 Bacteria 6686
149 Ga0436361_1218015 3300039447 Unclassified 4748
150 Ga0436363_0552087 3300039450 Bacteria 3614
151 Ga0436362_0446462 3300039453 Bacteria 1843
152 Ga0436362_1198408 3300039453 Bacteria 2341
153 Ga0466961_0006458 3300044693 Bacteria 7446
154 Ga0466967_0288829 3300045976 Bacteria 1575
155 Ga0495592_0074161 3300046454 Bacteria 2472
156 Ga0495653_0104636 3300046463 Unclassified 2045
157 Ga0495580_0007917 3300046472 Bacteria 8499
158 Ga0495664_0003001 3300046477 Bacteria 9125
159 Ga0495608_0014204 3300046511 Bacteria 5525
160 Ga0495628_0047179 3300046516 Bacteria 3419
161 Ga0495630_0002684 3300046517 Bacteria 12346
162 Ga0495665_0029030 3300046531 Bacteria 2964
163 Ga0495587_0000401 3300046536 Bacteria 30655
164 Ga0495645_0003293 3300046543 Bacteria 10943
165 Ga0495667_0000996 3300046559 Bacteria 18356
166 Ga0495599_0007577 3300046678 Bacteria 6588
167 Ga0495623_0019585 3300046679 Bacteria 4373
168 Ga0495623_0044172 3300046679 Bacteria 2833
169 Ga0495669_0071104 3300046684 Bacteria 1586
170 Ga0495613_0056318 3300046689 Bacteria 2887
171 Ga0495624_0007310 3300046690 Bacteria 7759
172 Ga0495604_0009954 3300047317 Bacteria 7523
173 Ga0495636_0000579 3300047318 Bacteria 13461
174 Ga0495674_0040556 3300047319 Bacteria 4164
175 Ga0495684_0004303 3300047471 Bacteria 11117
176 Ga0495684_0105959 3300047471 Bacteria 2124
177 Ga0495686_0002746 3300047472 Bacteria 16083
178 Ga0495686_0031283 3300047472 Bacteria 3452
179 Ga0495602_0000216 3300048088 Bacteria 53347
180 Ga0495602_0000559 3300048088 Bacteria 34721
181 Ga0496100_0069797 3300048903 Bacteria 2341
182 Ga0496102_0007630 3300048905 Bacteria 9248
183 Ga0496105_0095432 3300048908 Bacteria 2456
184 Ga0496106_0034164 3300048909 Unclassified 3798
185 Ga0496110_0168934 3300048913 Bacteria 1984
186 Ga0496112_0002827 3300048915 Bacteria 14094
187 Ga0496112_0064366 3300048915 Bacteria 3619
188 Ga0496113_0218299 3300048916 Bacteria 1519
189 Ga0496115_0068817 3300048918 Bacteria 2867
190 Ga0496115_0072114 3300048918 Bacteria 2802
191 Ga0496125_0000006 3300048928 Bacteria 759385
192 Ga0496126_0008049 3300048929 Bacteria 11435
193 Ga0496126_0020067 3300048929 Bacteria 6562
194 Ga0496126_0047546 3300048929 Bacteria 3927
195 Ga0501048_0000198 3300049582 Bacteria 39162
196 Ga0501035_0096220 3300049822 Bacteria 2602
197 Ga0501044_0051668 3300049823 Bacteria 4238
198 Ga0501044_0138425 3300049823 Bacteria 2424
199 nmdc:mga05p37_1654_c1 3300050507 Bacteria 25868
200 nmdc:mga05p37_49488_c1 3300050507 Bacteria 5170
201 nmdc:mga09592_104243_c1 3300050508 Bacteria 2430
202 nmdc:mga06r32_112431_c1 3300050510 Bacteria 2680
203 nmdc:mga0n895_17578_c1 3300050512 Bacteria 6595
204 nmdc:mga0n895_18595_c1 3300050512 Bacteria 6434
205 nmdc:mga0rr50_13349_c1 3300050513 Bacteria 5346
206 Ga0495601_0000449 3300053077 Bacteria 21582
207 Ga0500651_0007303 3300053093 Bacteria 6447
208 Ga0500559_0004509 3300053136 Bacteria 6591
209 Ga0500639_000012 3300053163 Bacteria 127545
210 2524464546 2524023210 Bacteria 9029266
211 2903776043 2903768456 Bacteria 9749579
212 2935783602 2935777560 Bacteria 8077691
213 8016615095 8016613128 Bacteria 8794220
214 8019545521 8019538911 Bacteria 7872763
215 Ga0070717_10168725
216 rootH2_10019082
217 rootH2_10053814
218 JGI25160J50197_1000018
219 Ga0065712_10011040
220 Ga0070691_10005115
221 Ga0070709_10029694
222 Ga0070711_100029967
223 Ga0070711_100054770
224 Ga0070694_100079102
225 Ga0070708_100006112
226 Ga0070708_100036717
227 Ga0070708_100059318
228 Ga0070708_100155574
229 Ga0070663_100019529
230 Ga0070678_100056613
231 Ga0070706_100002310
232 Ga0070706_100180234
233 Ga0070706_100186656
234 Ga0070707_100024940
235 Ga0070707_100029314
236 Ga0070707_100057463
237 Ga0070707_100204469
238 Ga0070698_100010025
239 Ga0070698_100010569
240 Ga0070698_100053218
241 Ga0070698_100140192
242 Ga0070698_100198268
243 Ga0070699_100004626
244 Ga0070699_100028698
245 Ga0070697_100018241
246 Ga0070697_100070344
247 Ga0070697_100145777
248 Ga0070695_100014887
249 Ga0070665_100000402
250 Ga0070665_100031707
251 Ga0070665_100041104
252 Ga0070704_100056724
253 Ga0068856_100239923
254 Ga0068852_100070544
255 Ga0068863_100257375
256 Ga0081455_10008969
257 Ga0081455_10014819
258 Ga0081455_10023206
259 Ga0081455_10090111
260 Ga0081540_1000017
261 Ga0081540_1001277
262 Ga0081540_1002241
263 Ga0081540_1004487
264 Ga0081540_1029681
265 Ga0081540_1043848
266 Ga0081540_1062846
267 Ga0070717_10001720
268 Ga0070717_10060017
269 Ga0070712_100026609
270 Ga0075428_100161683
271 Ga0075428_100182379
272 Ga0075431_100120604
273 Ga0075434_100002395
274 Ga0075434_100048102
275 Ga0075429_100078781
276 Ga0105240_10096319
277 Ga0105247_10014920
278 Ga0114129_10000466
279 Ga0114129_10068196
280 Ga0114129_10219060
281 Ga0105243_10010617
282 Ga0105242_10114133
283 Ga0105248_10003945
284 Ga0105248_10257487
285 Ga0105238_10079831
286 Ga0105249_10052723
287 Ga0157369_10016648
288 Ga0157369_10058521
289 Ga0157369_10131731
290 Ga0157378_10000811
291 Ga0157378_10169286
292 Ga0163162_10013916
293 Ga0163162_10016261
294 Ga0163162_10139792
295 Ga0157372_10008848
296 Ga0157372_10012577
297 Ga0213872_10029703
298 Ga0213872_10048912
299 Ga0213875_10032729
300 Ga0213871_10002703
301 Ga0228598_1000673
302 Ga0209233_1001010
303 Ga0209455_1010056
304 Ga0207697_10009145
305 Ga0207642_10005900
306 Ga0207710_10026391
307 Ga0207685_10025104
308 Ga0207699_10086791
309 Ga0207684_10002010
310 Ga0207684_10008588
311 Ga0207684_10016418
312 Ga0207684_10025429
313 Ga0207684_10124601
314 Ga0207684_10182314
315 Ga0207695_10079660
316 Ga0207693_10002961
317 Ga0207693_10010462
318 Ga0207646_10013382
319 Ga0207646_10042607
320 Ga0207646_10136199
321 Ga0207700_10060161
322 Ga0207664_10022947
323 Ga0207664_10109381
324 Ga0207709_10005926
325 Ga0207691_10082776
326 Ga0207658_10153080
327 Ga0207678_10074184
328 Ga0268266_10000210
329 Ga0268266_10143647
330 Ga0268266_10172798
331 Ga0265338_10050879
332 Ga0307511_10001904
333 Ga0265760_10003908
334 Ga0265320_10007592
335 Ga0373926_0009908
336 Ga0373943_0016705
337 Ga0373927_0001578
338 Ga0373927_0001933
339 Ga0373933_0003435
340 Ga0373947_0000962
341 Ga0373937_0000214
342 Ga0373937_0001742
343 Ga0373925_0000097
344 Ga0373925_0084224
345 Ga0395900_0233201
346 Ga0395905_0021903
347 Ga0436364_0010655
348 Ga0436365_0765828
349 Ga0436360_0220241
350 Ga0436360_0832437
351 Ga0436360_1047660
352 Ga0436360_1081954
353 Ga0436360_1152340
354 Ga0436361_0188289
355 Ga0436361_0277619
356 Ga0436361_0287987
357 Ga0436361_0993612
358 Ga0436361_1045207
359 Ga0436361_1050030
360 Ga0436361_1062700
361 Ga0436361_1106859
362 Ga0436361_1181291
363 Ga0436361_1218015
364 Ga0436363_0552087
365 Ga0436362_0446462
366 Ga0436362_1198408
367 Ga0466961_0006458
368 Ga0466967_0288829
369 Ga0495592_0074161
370 Ga0495653_0104636
371 Ga0495580_0007917
372 Ga0495664_0003001
373 Ga0495608_0014204
374 Ga0495628_0047179
375 Ga0495630_0002684
376 Ga0495665_0029030
377 Ga0495587_0000401
378 Ga0495645_0003293
379 Ga0495667_0000996
380 Ga0495599_0007577
381 Ga0495623_0019585
382 Ga0495623_0044172
383 Ga0495669_0071104
384 Ga0495613_0056318
385 Ga0495624_0007310
386 Ga0495604_0009954
387 Ga0495636_0000579
388 Ga0495674_0040556
389 Ga0495684_0004303
390 Ga0495684_0105959
391 Ga0495686_0002746
392 Ga0495686_0031283
393 Ga0495602_0000216
394 Ga0495602_0000559
395 Ga0496100_0069797
396 Ga0496102_0007630
397 Ga0496105_0095432
398 Ga0496106_0034164
399 Ga0496110_0168934
400 Ga0496112_0002827
401 Ga0496112_0064366
402 Ga0496113_0218299
403 Ga0496115_0068817
404 Ga0496115_0072114
405 Ga0496125_0000006
406 Ga0496126_0008049
407 Ga0496126_0020067
408 Ga0496126_0047546
409 Ga0501048_0000198
410 Ga0501035_0096220
411 Ga0501044_0051668
412 Ga0501044_0138425
413 nmdc:mga05p37_1654_c1
414 nmdc:mga05p37_49488_c1
415 nmdc:mga09592_104243_c1
416 nmdc:mga06r32_112431_c1
417 nmdc:mga0n895_17578_c1
418 nmdc:mga0n895_18595_c1
419 nmdc:mga0rr50_13349_c1
420 Ga0495601_0000449
421 Ga0500651_0007303
422 Ga0500559_0004509
423 Ga0500639_000012
424 2524464546
425 2903776043
426 2935783602
427 8016615095
428 8019545521

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02852

Pyr_redox_dim

Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

369

478

0.98

PF07992

Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

28

349

0.94

PF00070

Pyr_redox

Pyridine nucleotide-disulphide oxidoreductase

198

279

0.93

PF13738

Pyr_redox_3

Pyridine nucleotide-disulphide oxidoreductase

150

334

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
1kdg-assembly1.cif.gz_B crystal structure of the flavin domain of cellobiose dehydrogenase 0.9321 6 40
1i8t-assembly1.cif.gz_B structure of udp-galactopyranose mutase from e.coli 0.8915 10 45
1ebd-assembly1.cif.gz_B dihydrolipoamide dehydrogenase complexed with the binding domain of the dihydrolipoamide acetylase 0.8914 9 429
6i4t-assembly1.cif.gz_A crystal structure of the disease-causing i445m mutant of the human dihydrolipoamide dehydrogenase 0.8873 6 429
4mo2-assembly1.cif.gz_B-2 crystal structure of udp-n-acetylgalactopyranose mutase from campylobacter jejuni 0.884 10 49
ID Description Score Start End Superfamily
af_A0A1D6LYX0_29_117_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.985 167 239 3.50.50.60
af_P77212_327_440_3.30.390.30 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.969 319 429 3.30.390.30
af_Q2G0I4_328_439_3.30.390.30 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9635 319 428 3.30.390.30
4k8dA03 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9548 319 430 3.30.390.30
1ebdA03 Alpha Beta;2-Layer Sandwich;Enolase-like; domain 1;FAD/NAD-linked reductase, C-terminal dimerisation domain 0.9543 319 430 3.30.390.30
ID Description Score Start End GO Terms
AF-A0A371IMV5-F1-model_v4 Pyridine nucleotide-disulphide oxidoreductase dimerisation domain-containing protein 0.9853 347 432 GO:0003955
GO:0050660
AF-A0A2V6GG29-F1-model_v4 Pyridine nucleotide-disulphide oxidoreductase dimerisation domain-containing protein 0.9632 319 429 GO:0003955
GO:0050660
AF-A0A371IMV5-F1-model_v4 Pyridine nucleotide-disulphide oxidoreductase dimerisation domain-containing protein 0.9632 347 432 GO:0003955
GO:0050660
AF-A0A328CCS5-F1-model_v4 Pyridine nucleotide-disulphide oxidoreductase dimerisation domain-containing protein 0.9532 334 427
AF-A0A2H0G2A0-F1-model_v4 Pyridine nucleotide-disulfide oxidoreductase 0.9497 333 430 GO:0004148
GO:0006090
GO:0006103
GO:0050660

Map