F323787

General Info

Members Datasets Scaffolds Average Seq Length
213 133 426 401

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100034233|Ga0070706_1000342332
Length 427
Sequence MAQIALSAPLNHPLSRCRRPVLSCPAVTSPSPELEILRRGAVDLIEEEELARRIERKRLTVKVGFDPSAPDIHLGHTVVLRKMKHFQDAGHRVVFVVGDFTGMIGDPSGRKATRPQLSRAEIEANAATYTRQAFRILDPDKTVIEFNSSWLSPLGAEGFVRLAARITVARILERDDFQKRWTARQPIALHELLYPLAQGYDSVALKADVELGGTDQLFNLLLGRDLMREEGLEPQIVLTLPLLVGTDGTEKMSKSLGNAIGIEEPPSQIYGKLMSIPDRLMWSYYELLTDLSPEKIGKLRGAVEEGTANPRDVKGELARRITSDFHGGDAAARAEEDFRRAFSKGGLPEEIETREAPSDPGTAARTLVAVGLAGSMREARRKIAEGALRVYPVQRDPREVRDPEERLASKEATVLRLGRRFVRVIWT

Samples

Sample ID Description Type Environment
1 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
28 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
31 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
32 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
35 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
51 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
55 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
56 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
84 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
89 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
90 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
91 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
92 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
93 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
94 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
95 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
96 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
97 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
98 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
99 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
100 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
101 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
102 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
103 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
104 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
105 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
106 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
107 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
108 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
109 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
110 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
111 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
112 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
113 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
114 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
117 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
118 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
119 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
120 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
121 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
124 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
125 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
126 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
127 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
130 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
131 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
132 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
133 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 4.23
Rhizosphere 94.84
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070706_100034233 3300005467 Bacteria 4692
2 Ga0070690_100000916 3300005330 Bacteria 15008
3 Ga0070670_100082726 3300005331 Bacteria 2759
4 Ga0070670_100139394 3300005331 Bacteria 2097
5 Ga0070677_10060133 3300005333 Bacteria 1565
6 Ga0070666_10001298 3300005335 Bacteria 15129
7 Ga0070666_10068804 3300005335 Bacteria 2406
8 Ga0070689_100028846 3300005340 Bacteria 4197
9 Ga0070668_100061084 3300005347 Bacteria 2919
10 Ga0070669_100018764 3300005353 Bacteria 4945
11 Ga0070675_100006752 3300005354 Bacteria 8820
12 Ga0070675_100147549 3300005354 Bacteria 2015
13 Ga0070674_100013120 3300005356 Bacteria 5111
14 Ga0070688_100015846 3300005365 Bacteria 4297
15 Ga0070667_100002133 3300005367 Bacteria 17445
16 Ga0070667_100023236 3300005367 Bacteria 5144
17 Ga0070709_10000108 3300005434 Bacteria 57430
18 Ga0070705_100031605 3300005440 Bacteria 2933
19 Ga0070663_100020875 3300005455 Bacteria 4344
20 Ga0070662_100116717 3300005457 Bacteria 2040
21 Ga0068867_100006738 3300005459 Bacteria 8121
22 Ga0068867_100030416 3300005459 Bacteria 3895
23 Ga0070706_100003036 3300005467 Bacteria 16624
24 Ga0070706_100006196 3300005467 Bacteria 11316
25 Ga0070706_100012408 3300005467 Bacteria 7895
26 Ga0070706_100016633 3300005467 Bacteria 6795
27 Ga0070707_100005441 3300005468 Bacteria 11910
28 Ga0070698_100000078 3300005471 Bacteria 74608
29 Ga0070699_100055144 3300005518 Bacteria 3442
30 Ga0070699_100315082 3300005518 Bacteria 1405
31 Ga0070697_100004764 3300005536 Bacteria 10398
32 Ga0070697_100173472 3300005536 Bacteria 1826
33 Ga0070672_100002670 3300005543 Bacteria 11404
34 Ga0070672_100021498 3300005543 Bacteria 4723
35 Ga0070672_100024133 3300005543 Bacteria 4488
36 Ga0070686_100053791 3300005544 Bacteria 2573
37 Ga0070695_100022933 3300005545 Bacteria 3831
38 Ga0070665_100000781 3300005548 Bacteria 41883
39 Ga0070665_100045730 3300005548 Bacteria 4396
40 Ga0070665_100116947 3300005548 Bacteria 2669
41 Ga0070665_100226075 3300005548 Bacteria 1872
42 Ga0070704_100003312 3300005549 Bacteria 9216
43 Ga0070664_100018140 3300005564 Bacteria 5777
44 Ga0070664_100018523 3300005564 Bacteria 5723
45 Ga0070664_100127845 3300005564 Bacteria 2230
46 Ga0068854_100046745 3300005578 Bacteria 3083
47 Ga0068856_100015724 3300005614 Bacteria 7317
48 Ga0070702_100019636 3300005615 Bacteria 3530
49 Ga0068859_100000514 3300005617 Bacteria 38330
50 Ga0068866_10026740 3300005718 Bacteria 2729
51 Ga0068863_100009377 3300005841 Bacteria 9551
52 Ga0068863_100030722 3300005841 Bacteria 5129
53 Ga0068863_100034245 3300005841 Bacteria 4838
54 Ga0068863_100064174 3300005841 Bacteria 3473
55 Ga0068858_100001832 3300005842 Bacteria 21648
56 Ga0068860_100005704 3300005843 Bacteria 12568
57 Ga0068860_100006128 3300005843 Bacteria 12093
58 Ga0068860_100022823 3300005843 Bacteria 6051
59 Ga0068862_100036799 3300005844 Bacteria 4148
60 Ga0081455_10046680 3300005937 Bacteria 3756
61 Ga0097621_100038139 3300006237 Bacteria 3855
62 Ga0068871_100056225 3300006358 Bacteria 3198
63 Ga0068871_100076395 3300006358 Bacteria 2766
64 Ga0075431_100005288 3300006847 Bacteria 12724
65 Ga0075433_10000775 3300006852 Bacteria 21995
66 Ga0075433_10006694 3300006852 Bacteria 9126
67 Ga0075434_100003260 3300006871 Bacteria 14505
68 Ga0075434_100003418 3300006871 Bacteria 14205
69 Ga0075434_100003811 3300006871 Bacteria 13480
70 Ga0075434_100014507 3300006871 Bacteria 7533
71 Ga0075434_100045647 3300006871 Bacteria 4347
72 Ga0075434_100069854 3300006871 Bacteria 3502
73 Ga0075436_100069499 3300006914 Bacteria 2433
74 Ga0075436_100083380 3300006914 Bacteria 2218
75 Ga0097620_100000514 3300006931 Bacteria 38330
76 Ga0075435_100028644 3300007076 Bacteria 4368
77 Ga0075435_100153406 3300007076 Bacteria 1938
78 Ga0114129_10004222 3300009147 Bacteria 20299
79 Ga0114129_10037282 3300009147 Bacteria 6864
80 Ga0105243_10093438 3300009148 Bacteria 2482
81 Ga0105248_10008568 3300009177 Bacteria 11228
82 Ga0105248_10101649 3300009177 Bacteria 3240
83 Ga0105248_10381177 3300009177 Bacteria 1588
84 Ga0105249_10023133 3300009553 Bacteria 5573
85 Ga0157374_10005578 3300013296 Bacteria 10595
86 Ga0157378_10002023 3300013297 Bacteria 18140
87 Ga0157375_10047221 3300013308 Bacteria 4203
88 Ga0157375_10191989 3300013308 Bacteria 2197
89 Ga0163163_10160784 3300014325 Bacteria 2291
90 Ga0157379_10003032 3300014968 Bacteria 14195
91 Ga0157376_10111411 3300014969 Bacteria 2409
92 Ga0157376_10134612 3300014969 Bacteria 2210
93 Ga0157376_10269846 3300014969 Bacteria 1598
94 Ga0207682_10023105 3300025893 Bacteria 2455
95 Ga0207680_10004579 3300025903 Bacteria 6566
96 Ga0207699_10000292 3300025906 Bacteria 27020
97 Ga0207645_10064005 3300025907 Bacteria 2350
98 Ga0207684_10003035 3300025910 Bacteria 16641
99 Ga0207684_10015379 3300025910 Bacteria 6587
100 Ga0207684_10016629 3300025910 Bacteria 6315
101 Ga0207684_10024423 3300025910 Bacteria 5153
102 Ga0207684_10092657 3300025910 Bacteria 2575
103 Ga0207649_10085417 3300025920 Bacteria 2054
104 Ga0207646_10108314 3300025922 Bacteria 2493
105 Ga0207646_10128075 3300025922 Bacteria 2283
106 Ga0207650_10058501 3300025925 Bacteria 2870
107 Ga0207659_10032165 3300025926 Bacteria 3598
108 Ga0207687_10183527 3300025927 Bacteria 1622
109 Ga0207706_10149368 3300025933 Bacteria 2055
110 Ga0207704_10005878 3300025938 Bacteria 5680
111 Ga0207691_10001346 3300025940 Bacteria 24496
112 Ga0207691_10002322 3300025940 Bacteria 18625
113 Ga0207691_10006321 3300025940 Bacteria 11439
114 Ga0207711_10002902 3300025941 Bacteria 15021
115 Ga0207679_10013634 3300025945 Bacteria 5329
116 Ga0207679_10027889 3300025945 Bacteria 3911
117 Ga0207667_10140938 3300025949 Bacteria 2482
118 Ga0207651_10017858 3300025960 Bacteria 4204
119 Ga0207651_10119616 3300025960 Bacteria 1995
120 Ga0207658_10003178 3300025986 Bacteria 11715
121 Ga0207658_10012036 3300025986 Bacteria 5902
122 Ga0207703_10002703 3300026035 Bacteria 15189
123 Ga0207703_10128470 3300026035 Bacteria 2185
124 Ga0207678_10035215 3300026067 Bacteria 4359
125 Ga0207708_10135497 3300026075 Bacteria 1928
126 Ga0207702_10018430 3300026078 Bacteria 5775
127 Ga0207641_10022663 3300026088 Bacteria 5169
128 Ga0207641_10082528 3300026088 Bacteria 2793
129 Ga0207641_10136618 3300026088 Bacteria 2207
130 Ga0207641_10146851 3300026088 Bacteria 2133
131 Ga0207648_10013912 3300026089 Bacteria 7462
132 Ga0207648_10058186 3300026089 Bacteria 3371
133 Ga0207675_100074649 3300026118 Bacteria 3173
134 Ga0207675_100175417 3300026118 Bacteria 2051
135 Ga0207683_10001197 3300026121 Bacteria 23484
136 Ga0209968_1001114 3300027526 Bacteria 4101
137 Ga0209970_1003184 3300027614 Bacteria 2774
138 Ga0209966_1000722 3300027695 Bacteria 7015
139 Ga0209974_10000254 3300027876 Bacteria 17341
140 Ga0268266_10002725 3300028379 Bacteria 18523
141 Ga0268266_10041990 3300028379 Bacteria 3904
142 Ga0268264_10001035 3300028381 Bacteria 27936
143 Ga0268264_10001393 3300028381 Bacteria 22617
144 Ga0265327_10003695 3300031251 Bacteria 14296
145 Ga0265316_10073389 3300031344 Bacteria 2636
146 Ga0316576_10046079 3300031727 Bacteria 3155
147 Ga0316578_10011251 3300031728 Bacteria 4671
148 Ga0316577_10010379 3300031733 Bacteria 5026
149 Ga0316577_10057122 3300031733 Bacteria 2179
150 Ga0316585_10026147 3300032137 Bacteria 1813
151 Ga0316580_10004195 3300032139 Bacteria 4159
152 Ga0373929_0000020 3300035085 Bacteria 99753
153 Ga0373943_0073771 3300035170 Bacteria 1734
154 Ga0316574_0003927 3300035398 Bacteria 7730
155 Ga0316574_0097923 3300035398 Bacteria 1875
156 Ga0316574_0107471 3300035398 Bacteria 1788
157 Ga0373935_0105105 3300035692 Bacteria 1867
158 Ga0373947_0135093 3300035725 Bacteria 1578
159 Ga0373937_0004095 3300036401 Bacteria 12371
160 Ga0373937_0021881 3300036401 Bacteria 5741
161 Ga0316584_0004255 3300036712 Bacteria 9456
162 Ga0316584_0021646 3300036712 Bacteria 4676
163 Ga0451577_0014089 3300042876 Bacteria 7457
164 Ga0451577_0023999 3300042876 Bacteria 5553
165 Ga0451577_0026311 3300042876 Bacteria 5271
166 Ga0451577_0037983 3300042876 Bacteria 4332
167 Ga0453683_0020425 3300044673 Bacteria 4232
168 Ga0453683_0089594 3300044673 Bacteria 1928
169 Ga0453684_0000503 3300044712 Bacteria 152937
170 Ga0453684_0017900 3300044712 Bacteria 10934
171 Ga0453684_0162350 3300044712 Bacteria 2641
172 Ga0453684_0166502 3300044712 Bacteria 2601
173 Ga0453684_0341018 3300044712 Bacteria 1692
174 Ga0451576_0012756 3300045051 Bacteria 9431
175 Ga0451576_0265485 3300045051 Bacteria 1794
176 Ga0451576_0457952 3300045051 Bacteria 1339
177 Ga0495629_0167051 3300046459 Bacteria 1528
178 Ga0495580_0006103 3300046472 Bacteria 9854
179 Ga0495580_0034015 3300046472 Bacteria 3670
180 Ga0495665_0053329 3300046531 Bacteria 2139
181 Ga0495640_0103835 3300046533 Bacteria 1863
182 Ga0495586_0029163 3300046535 Bacteria 2954
183 Ga0495684_0036456 3300047471 Bacteria 3770
184 Ga0495602_0054220 3300048088 Bacteria 3542
185 Ga0496100_0045722 3300048903 Bacteria 2811
186 Ga0496101_0014328 3300048904 Bacteria 5324
187 Ga0496102_0027896 3300048905 Bacteria 5043
188 Ga0496103_0014975 3300048906 Bacteria 4610
189 Ga0496105_0124982 3300048908 Bacteria 2120
190 Ga0496106_0034321 3300048909 Bacteria 3788
191 Ga0496107_0001620 3300048910 Bacteria 14018
192 Ga0496109_0021886 3300048912 Bacteria 5660
193 Ga0496114_0064748 3300048917 Bacteria 3062
194 Ga0496116_0025102 3300048919 Bacteria 4390
195 Ga0496121_0098082 3300048924 Bacteria 2269
196 Ga0501071_0359479 3300049587 Bacteria 1109
197 Ga0501074_0031711 3300049590 Bacteria 3829
198 Ga0501045_0079735 3300049824 Bacteria 2414
199 nmdc:mga05p37_145218_c1 3300050507 Bacteria 2906
200 nmdc:mga05p37_272892_c1 3300050507 Bacteria 2020
201 nmdc:mga05p37_94805_c1 3300050507 Bacteria 3677
202 nmdc:mga06r32_13457_c1 3300050510 Bacteria 7411
203 nmdc:mga0n895_136606_c1 3300050512 Bacteria 2478
204 nmdc:mga0n895_1499_c1 3300050512 Bacteria 17513
205 nmdc:mga0n895_3452_c1 3300050512 Bacteria 12750
206 nmdc:mga0n895_48323_c1 3300050512 Bacteria 4164
207 nmdc:mga0n895_65767_c1 3300050512 Bacteria 3589
208 nmdc:mga08x19_197012_c1 3300050514 Bacteria 1380
209 nmdc:mga0a205_32730_c1 3300050515 Bacteria 4984
210 nmdc:mga0a205_51473_c1 3300050515 Bacteria 3976
211 nmdc:mga0a205_714_c1 3300050515 Bacteria 26702
212 Ga0495619_0018678 3300053085 Bacteria 4400
213 Ga0530510_0006153 3300061734 Bacteria 8336
214 Ga0070706_100034233
215 Ga0070690_100000916
216 Ga0070670_100082726
217 Ga0070670_100139394
218 Ga0070677_10060133
219 Ga0070666_10001298
220 Ga0070666_10068804
221 Ga0070689_100028846
222 Ga0070668_100061084
223 Ga0070669_100018764
224 Ga0070675_100006752
225 Ga0070675_100147549
226 Ga0070674_100013120
227 Ga0070688_100015846
228 Ga0070667_100002133
229 Ga0070667_100023236
230 Ga0070709_10000108
231 Ga0070705_100031605
232 Ga0070663_100020875
233 Ga0070662_100116717
234 Ga0068867_100006738
235 Ga0068867_100030416
236 Ga0070706_100003036
237 Ga0070706_100006196
238 Ga0070706_100012408
239 Ga0070706_100016633
240 Ga0070707_100005441
241 Ga0070698_100000078
242 Ga0070699_100055144
243 Ga0070699_100315082
244 Ga0070697_100004764
245 Ga0070697_100173472
246 Ga0070672_100002670
247 Ga0070672_100021498
248 Ga0070672_100024133
249 Ga0070686_100053791
250 Ga0070695_100022933
251 Ga0070665_100000781
252 Ga0070665_100045730
253 Ga0070665_100116947
254 Ga0070665_100226075
255 Ga0070704_100003312
256 Ga0070664_100018140
257 Ga0070664_100018523
258 Ga0070664_100127845
259 Ga0068854_100046745
260 Ga0068856_100015724
261 Ga0070702_100019636
262 Ga0068859_100000514
263 Ga0068866_10026740
264 Ga0068863_100009377
265 Ga0068863_100030722
266 Ga0068863_100034245
267 Ga0068863_100064174
268 Ga0068858_100001832
269 Ga0068860_100005704
270 Ga0068860_100006128
271 Ga0068860_100022823
272 Ga0068862_100036799
273 Ga0081455_10046680
274 Ga0097621_100038139
275 Ga0068871_100056225
276 Ga0068871_100076395
277 Ga0075431_100005288
278 Ga0075433_10000775
279 Ga0075433_10006694
280 Ga0075434_100003260
281 Ga0075434_100003418
282 Ga0075434_100003811
283 Ga0075434_100014507
284 Ga0075434_100045647
285 Ga0075434_100069854
286 Ga0075436_100069499
287 Ga0075436_100083380
288 Ga0097620_100000514
289 Ga0075435_100028644
290 Ga0075435_100153406
291 Ga0114129_10004222
292 Ga0114129_10037282
293 Ga0105243_10093438
294 Ga0105248_10008568
295 Ga0105248_10101649
296 Ga0105248_10381177
297 Ga0105249_10023133
298 Ga0157374_10005578
299 Ga0157378_10002023
300 Ga0157375_10047221
301 Ga0157375_10191989
302 Ga0163163_10160784
303 Ga0157379_10003032
304 Ga0157376_10111411
305 Ga0157376_10134612
306 Ga0157376_10269846
307 Ga0207682_10023105
308 Ga0207680_10004579
309 Ga0207699_10000292
310 Ga0207645_10064005
311 Ga0207684_10003035
312 Ga0207684_10015379
313 Ga0207684_10016629
314 Ga0207684_10024423
315 Ga0207684_10092657
316 Ga0207649_10085417
317 Ga0207646_10108314
318 Ga0207646_10128075
319 Ga0207650_10058501
320 Ga0207659_10032165
321 Ga0207687_10183527
322 Ga0207706_10149368
323 Ga0207704_10005878
324 Ga0207691_10001346
325 Ga0207691_10002322
326 Ga0207691_10006321
327 Ga0207711_10002902
328 Ga0207679_10013634
329 Ga0207679_10027889
330 Ga0207667_10140938
331 Ga0207651_10017858
332 Ga0207651_10119616
333 Ga0207658_10003178
334 Ga0207658_10012036
335 Ga0207703_10002703
336 Ga0207703_10128470
337 Ga0207678_10035215
338 Ga0207708_10135497
339 Ga0207702_10018430
340 Ga0207641_10022663
341 Ga0207641_10082528
342 Ga0207641_10136618
343 Ga0207641_10146851
344 Ga0207648_10013912
345 Ga0207648_10058186
346 Ga0207675_100074649
347 Ga0207675_100175417
348 Ga0207683_10001197
349 Ga0209968_1001114
350 Ga0209970_1003184
351 Ga0209966_1000722
352 Ga0209974_10000254
353 Ga0268266_10002725
354 Ga0268266_10041990
355 Ga0268264_10001035
356 Ga0268264_10001393
357 Ga0265327_10003695
358 Ga0265316_10073389
359 Ga0316576_10046079
360 Ga0316578_10011251
361 Ga0316577_10010379
362 Ga0316577_10057122
363 Ga0316585_10026147
364 Ga0316580_10004195
365 Ga0373929_0000020
366 Ga0373943_0073771
367 Ga0316574_0003927
368 Ga0316574_0097923
369 Ga0316574_0107471
370 Ga0373935_0105105
371 Ga0373947_0135093
372 Ga0373937_0004095
373 Ga0373937_0021881
374 Ga0316584_0004255
375 Ga0316584_0021646
376 Ga0451577_0014089
377 Ga0451577_0023999
378 Ga0451577_0026311
379 Ga0451577_0037983
380 Ga0453683_0020425
381 Ga0453683_0089594
382 Ga0453684_0000503
383 Ga0453684_0017900
384 Ga0453684_0162350
385 Ga0453684_0166502
386 Ga0453684_0341018
387 Ga0451576_0012756
388 Ga0451576_0265485
389 Ga0451576_0457952
390 Ga0495629_0167051
391 Ga0495580_0006103
392 Ga0495580_0034015
393 Ga0495665_0053329
394 Ga0495640_0103835
395 Ga0495586_0029163
396 Ga0495684_0036456
397 Ga0495602_0054220
398 Ga0496100_0045722
399 Ga0496101_0014328
400 Ga0496102_0027896
401 Ga0496103_0014975
402 Ga0496105_0124982
403 Ga0496106_0034321
404 Ga0496107_0001620
405 Ga0496109_0021886
406 Ga0496114_0064748
407 Ga0496116_0025102
408 Ga0496121_0098082
409 Ga0501071_0359479
410 Ga0501074_0031711
411 Ga0501045_0079735
412 nmdc:mga05p37_145218_c1
413 nmdc:mga05p37_272892_c1
414 nmdc:mga05p37_94805_c1
415 nmdc:mga06r32_13457_c1
416 nmdc:mga0n895_136606_c1
417 nmdc:mga0n895_1499_c1
418 nmdc:mga0n895_3452_c1
419 nmdc:mga0n895_48323_c1
420 nmdc:mga0n895_65767_c1
421 nmdc:mga08x19_197012_c1
422 nmdc:mga0a205_32730_c1
423 nmdc:mga0a205_51473_c1
424 nmdc:mga0a205_714_c1
425 Ga0495619_0018678
426 Ga0530510_0006153

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00579

tRNA-synt_1b

tRNA synthetases class I (W and Y)

55

343

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bqz-assembly1.cif.gz_A crystal structure of tyrosine-trna synthetase from acinetobacter baumannii with bound l-tyrosine 0.9642 7 220
6bqz-assembly2.cif.gz_B crystal structure of tyrosine-trna synthetase from acinetobacter baumannii with bound l-tyrosine 0.9628 7 220
6bqy-assembly2.cif.gz_B crystal structure of tyrosine-trna synthetase from acinetobacter baumannii 0.9456 7 220
6bqz-assembly2.cif.gz_B crystal structure of tyrosine-trna synthetase from acinetobacter baumannii with bound l-tyrosine 0.9411 7 220
6bqz-assembly1.cif.gz_A crystal structure of tyrosine-trna synthetase from acinetobacter baumannii with bound l-tyrosine 0.9379 7 220
ID Description Score Start End Superfamily
1h3fB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9628 8 219 3.40.50.620
1h3fB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9538 220 299 1.10.240.10
1h3fB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9535 8 219 3.40.50.620
2pidA02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.926 243 312 1.10.240.10
3zxiB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9198 243 312 1.10.240.10
ID Description Score Start End GO Terms
AF-A0A352RXW4-F1-model_v4 tyrosine--tRNA ligase (EC 6.1.1.1) 0.9892 103 196 GO:0004831
GO:0005524
GO:0005829
GO:0006437
AF-A0A7S0PG61-F1-model_v4 Tyrosine--tRNA ligase (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) 0.9856 131 228 GO:0004831
GO:0005524
GO:0005829
GO:0006437
AF-X1RAE2-F1-model_v4 tyrosine--tRNA ligase (EC 6.1.1.1) 0.984 149 230 GO:0004831
GO:0005524
GO:0005829
GO:0006437
AF-A0A6I1INX2-F1-model_v4 deleted 0.9804 109 257
AF-X1JGY7-F1-model_v4 tyrosine--tRNA ligase (EC 6.1.1.1) 0.9786 139 238 GO:0004831
GO:0005524
GO:0005829
GO:0006437

Map