F323106

General Info

Members Datasets Scaffolds Average Seq Length
212 127 424 384

Family's Representative Sequence

Representative Sequence 3300039062|Ga0400483_116707|Ga0400483_116707_5506_6759
Length 417
Sequence VTRCASTEPTSVAVAGSTGSIGTQTLEVVAADPDRYRVVALAAGSNVALLAEQAQAVRPRWVVVGDETRRHELAAVVPDGIEVMSGPSALAEVAAAADVTVNGIVGFAGLPVTLECLRAGKRLALANKESLIAAGPVVQQARLTPGAELVPVDSEHAAVHQCLRANDVAARVDRLQLTASGGPFRGRSGDELASVTVDQALAHPTWSMGPKITIDSSTLMNKGLEVIEAHELFGRPAGPSGADLGLDDIDVVVHPQSIVHSMVTFSDGSTIAQLSTPDMRLPIGYALAYPDRSPVPYGRIDWTRLGRLDFEPPDRQAFPCLDLAFAAGRIGGTAPAWLSAANEVAVDGFLTGRIRWIDIPDVIEGVLSDHDGGAGVTLDEVLQADAEARQRASERVDRTASRRGAAAGERQQQVRVS

Samples

Sample ID Description Type Environment
1 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
10 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
11 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
12 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
16 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
17 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
18 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
19 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
24 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
25 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
26 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
27 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
28 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
42 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
46 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
47 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
48 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
49 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
53 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
54 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
55 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
56 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
57 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
58 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
59 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
60 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
61 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
62 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
63 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
64 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
65 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
66 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
67 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
68 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
69 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
70 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
71 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
72 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
73 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
74 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
75 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
76 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
77 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
78 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
79 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
80 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
81 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
82 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
86 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
102 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
103 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
104 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
105 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
106 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
107 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
108 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
109 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
110 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
111 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
112 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
113 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
116 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
117 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
118 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
119 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
120 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
121 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
122 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
123 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
127 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.53
Metatranscriptomes 0
Isolates 0.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.13
Nodule 0
Rhizoplane 8.49
Rhizosphere 74.53
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400483_116707 3300039062 Bacteria 51248
2 JGI25407J50210_10000542 3300003373 Bacteria 7599
3 Ga0070670_100053584 3300005331 Bacteria 3464
4 Ga0068869_100141607 3300005334 Bacteria 1857
5 Ga0070669_100220127 3300005353 Bacteria 1500
6 Ga0070714_100000944 3300005435 Bacteria 20683
7 Ga0070714_100011283 3300005435 Bacteria 7083
8 Ga0070714_100135758 3300005435 Bacteria 2203
9 Ga0070681_10207878 3300005458 Bacteria 1874
10 Ga0070665_100145090 3300005548 Bacteria 2377
11 Ga0068852_100305686 3300005616 Bacteria 1541
12 Ga0068858_100030192 3300005842 Bacteria 5034
13 Ga0068860_100010252 3300005843 Bacteria 9276
14 Ga0068860_100141009 3300005843 Bacteria 2316
15 Ga0068862_100016673 3300005844 Bacteria 6117
16 Ga0081455_10001617 3300005937 Bacteria 27507
17 Ga0081455_10002572 3300005937 Bacteria 21527
18 Ga0081455_10006881 3300005937 Bacteria 12112
19 Ga0081455_10085677 3300005937 Bacteria 2568
20 Ga0075365_10023861 3300006038 Bacteria 3852
21 Ga0075365_10051982 3300006038 Bacteria 2708
22 Ga0075363_100026505 3300006048 Bacteria 2966
23 Ga0075364_10094723 3300006051 Bacteria 1984
24 Ga0075367_10004682 3300006178 Bacteria 6715
25 Ga0075367_10088491 3300006178 Bacteria 1882
26 Ga0075367_10113523 3300006178 Bacteria 1665
27 Ga0068865_100153448 3300006881 Bacteria 1749
28 Ga0111539_10016491 3300009094 Bacteria 9159
29 Ga0105245_10009506 3300009098 Bacteria 8479
30 Ga0105245_10010815 3300009098 Bacteria 7940
31 Ga0105245_10145109 3300009098 Bacteria 2239
32 Ga0105243_10017220 3300009148 Bacteria 5466
33 Ga0105243_10084222 3300009148 Bacteria 2604
34 Ga0105242_10002671 3300009176 Bacteria 13978
35 Ga0105242_10058735 3300009176 Bacteria 3155
36 Ga0105248_10053136 3300009177 Bacteria 4546
37 Ga0157369_10228729 3300013105 Bacteria 1945
38 Ga0157378_10216790 3300013297 Bacteria 1818
39 Ga0157375_10108207 3300013308 Bacteria 2874
40 Ga0213876_10016897 3300021384 Bacteria 3855
41 Ga0213876_10032213 3300021384 Bacteria 2765
42 Ga0213876_10047234 3300021384 Bacteria 2276
43 Ga0207642_10003111 3300025899 Bacteria 5204
44 Ga0207688_10074534 3300025901 Bacteria 1930
45 Ga0207645_10069480 3300025907 Bacteria 2253
46 Ga0207707_10155101 3300025912 Bacteria 2003
47 Ga0207687_10004285 3300025927 Bacteria 9527
48 Ga0207687_10015752 3300025927 Bacteria 4962
49 Ga0207664_10152039 3300025929 Bacteria 1967
50 Ga0207709_10222432 3300025935 Bacteria 1362
51 Ga0207711_10325290 3300025941 Bacteria 1421
52 Ga0207712_10115062 3300025961 Bacteria 2024
53 Ga0207703_10021596 3300026035 Bacteria 5041
54 Ga0207708_10045371 3300026075 Bacteria 3350
55 Ga0207641_10031557 3300026088 Bacteria 4395
56 Ga0207675_100179003 3300026118 Bacteria 2030
57 Ga0207675_100281563 3300026118 Bacteria 1616
58 Ga0209813_10021216 3300027866 Bacteria 1823
59 Ga0268266_10139067 3300028379 Bacteria 2178
60 Ga0268264_10005815 3300028381 Bacteria 10454
61 Ga0268264_10030582 3300028381 Bacteria 4414
62 Ga0265327_10001407 3300031251 Bacteria 30661
63 Ga0307408_100134030 3300031548 Bacteria 1936
64 Ga0316576_10021670 3300031727 Bacteria 4449
65 Ga0316576_10044979 3300031727 Bacteria 3191
66 Ga0316576_10086890 3300031727 Bacteria 2326
67 Ga0316576_10089847 3300031727 Bacteria 2287
68 Ga0316577_10018761 3300031733 Bacteria 3827
69 Ga0316577_10061607 3300031733 Bacteria 2094
70 Ga0307413_10077197 3300031824 Bacteria 2120
71 Ga0307409_100010206 3300031995 Bacteria 5822
72 Ga0307416_100032413 3300032002 Bacteria 3948
73 Ga0316574_0010859 3300035398 Bacteria 5160
74 Ga0316574_0011146 3300035398 Bacteria 5101
75 Ga0316574_0054431 3300035398 Bacteria 2499
76 Ga0316574_0061776 3300035398 Bacteria 2353
77 Ga0316574_0174330 3300035398 Bacteria 1384
78 Ga0373937_0010033 3300036401 Bacteria 8258
79 Ga0316582_0018640 3300036647 Bacteria 4043
80 Ga0316584_0001433 3300036712 Bacteria 14280
81 Ga0316584_0104469 3300036712 Bacteria 2120
82 Ga0436364_0353170 3300037853 Bacteria 1997
83 Ga0436364_0626376 3300037853 Bacteria 3023
84 Ga0436364_1208874 3300037853 Bacteria 1597
85 Ga0400485_04900 3300038735 Bacteria 12239
86 Ga0400483_039773 3300039062 Bacteria 2103
87 Ga0400483_086726 3300039062 Bacteria 7086
88 Ga0400483_193515 3300039062 Bacteria 56248
89 Ga0400483_200168 3300039062 Bacteria 4261
90 Ga0400483_221257 3300039062 Bacteria 2799
91 Ga0400483_229484 3300039062 Bacteria 13054
92 Ga0436365_1001352 3300039437 Bacteria 8242
93 Ga0436365_1011531 3300039437 Bacteria 2473
94 Ga0436365_1168654 3300039437 Bacteria 11360
95 Ga0436365_1182735 3300039437 Bacteria 3538
96 Ga0436361_0316223 3300039447 Bacteria 5712
97 Ga0436363_1193621 3300039450 Bacteria 2165
98 Ga0436362_0376223 3300039453 Bacteria 15508
99 Ga0436362_0916577 3300039453 Bacteria 3847
100 Ga0451837_0259751 3300041494 Bacteria 2109
101 Ga0451853_0096801 3300041512 Bacteria 1672
102 Ga0439452_020596 3300042010 Bacteria 1728
103 Ga0450920_007124 3300042122 Bacteria 2022
104 Ga0466957_0005560 3300044842 Bacteria 7081
105 Ga0466958_0017610 3300045836 Bacteria 4134
106 Ga0495641_0056448 3300046461 Bacteria 1780
107 Ga0495651_0001305 3300046462 Bacteria 19295
108 Ga0495653_0049293 3300046463 Bacteria 3245
109 Ga0495639_0017227 3300046475 Bacteria 3138
110 Ga0495608_0007681 3300046511 Bacteria 7603
111 Ga0495628_0071977 3300046516 Bacteria 2694
112 Ga0495630_0209104 3300046517 Bacteria 1489
113 Ga0495587_0023507 3300046536 Bacteria 3787
114 Ga0495623_0023220 3300046679 Bacteria 4003
115 Ga0495647_0022293 3300046681 Bacteria 2287
116 Ga0495670_0038612 3300046691 Bacteria 2381
117 Ga0495604_0019491 3300047317 Bacteria 5430
118 Ga0495604_0099147 3300047317 Bacteria 2144
119 Ga0495676_0123169 3300047321 Bacteria 1883
120 Ga0495676_0207462 3300047321 Bacteria 1358
121 Ga0496103_0131795 3300048906 Bacteria 1596
122 Ga0496104_0087122 3300048907 Bacteria 2982
123 Ga0496108_0017170 3300048911 Bacteria 5919
124 Ga0496108_0022551 3300048911 Bacteria 5177
125 Ga0496109_0068821 3300048912 Bacteria 3245
126 Ga0496109_0106117 3300048912 Bacteria 2609
127 Ga0496110_0001141 3300048913 Bacteria 18800
128 Ga0496110_0041532 3300048913 Bacteria 4014
129 Ga0496110_0072800 3300048913 Bacteria 3050
130 Ga0496110_0093336 3300048913 Bacteria 2694
131 Ga0496110_0191386 3300048913 Bacteria 1858
132 Ga0496111_0021536 3300048914 Bacteria 4503
133 Ga0496111_0073729 3300048914 Bacteria 2486
134 Ga0496111_0211648 3300048914 Bacteria 1440
135 Ga0496114_0006342 3300048917 Bacteria 9307
136 Ga0496114_0022325 3300048917 Bacteria 5157
137 Ga0496114_0126442 3300048917 Bacteria 2204
138 Ga0496114_0149089 3300048917 Bacteria 2029
139 Ga0496126_0043191 3300048929 Bacteria 4159
140 Ga0501031_0035640 3300049568 Bacteria 3246
141 Ga0501031_0122482 3300049568 Bacteria 1699
142 Ga0501032_0022171 3300049569 Bacteria 4406
143 Ga0501033_0008325 3300049570 Bacteria 8032
144 Ga0501034_0000814 3300049571 Bacteria 46426
145 Ga0501034_0005398 3300049571 Bacteria 13981
146 Ga0501034_0099296 3300049571 Bacteria 2906
147 Ga0501034_0145531 3300049571 Bacteria 2347
148 Ga0501034_0151365 3300049571 Bacteria 2296
149 Ga0501036_0010068 3300049572 Bacteria 7790
150 Ga0501036_0065725 3300049572 Bacteria 3069
151 Ga0501036_0081547 3300049572 Bacteria 2734
152 Ga0501037_0026289 3300049573 Bacteria 4302
153 Ga0501038_0118299 3300049574 Bacteria 2188
154 Ga0501038_0193822 3300049574 Bacteria 1634
155 Ga0501039_0239064 3300049575 Bacteria 1428
156 Ga0501040_0003138 3300049576 Bacteria 10725
157 Ga0501041_0006573 3300049577 Bacteria 6808
158 Ga0501041_0030220 3300049577 Bacteria 3270
159 Ga0501041_0061277 3300049577 Bacteria 2303
160 Ga0501041_0138679 3300049577 Bacteria 1516
161 Ga0501042_0012541 3300049578 Bacteria 5743
162 Ga0501042_0035666 3300049578 Bacteria 3528
163 Ga0501046_0023408 3300049580 Bacteria 5083
164 Ga0501046_0118327 3300049580 Bacteria 2018
165 Ga0501048_0154611 3300049582 Bacteria 1623
166 Ga0501067_0016520 3300049583 Bacteria 4077
167 Ga0501069_0000103 3300049585 Bacteria 39330
168 Ga0501069_0013899 3300049585 Bacteria 4298
169 Ga0501070_0000001 3300049586 Bacteria 519187
170 Ga0501071_0047956 3300049587 Bacteria 3070
171 Ga0501071_0068497 3300049587 Bacteria 2582
172 Ga0501072_0005428 3300049588 Bacteria 9706
173 Ga0501072_0124659 3300049588 Bacteria 2052
174 Ga0501072_0151814 3300049588 Bacteria 1847
175 Ga0501074_0038821 3300049590 Bacteria 3449
176 Ga0501074_0122921 3300049590 Bacteria 1856
177 Ga0501075_0004687 3300049591 Bacteria 9283
178 Ga0501075_0030548 3300049591 Bacteria 3992
179 Ga0501075_0065190 3300049591 Bacteria 2748
180 Ga0501076_0001570 3300049592 Bacteria 15333
181 Ga0501076_0027497 3300049592 Bacteria 4411
182 Ga0501076_0038702 3300049592 Bacteria 3744
183 Ga0501077_0004142 3300049593 Bacteria 8766
184 Ga0501079_0008329 3300049741 Bacteria 7859
185 Ga0501079_0082960 3300049741 Bacteria 2479
186 Ga0501080_0002607 3300049742 Bacteria 15784
187 Ga0501080_0182404 3300049742 Bacteria 1931
188 Ga0501081_0007708 3300049743 Bacteria 6981
189 Ga0501081_0055770 3300049743 Bacteria 2730
190 Ga0501035_0056933 3300049822 Bacteria 3487
191 Ga0501044_0010670 3300049823 Bacteria 9968
192 Ga0501045_0002564 3300049824 Bacteria 12389
193 Ga0501045_0009546 3300049824 Bacteria 6789
194 Ga0501045_0017236 3300049824 Bacteria 5127
195 Ga0501045_0073417 3300049824 Bacteria 2519
196 nmdc:mga00v17_7410_c1 3300050491 Bacteria 5854
197 nmdc:mga0yw44_161787_c1 3300050492 Bacteria 1466
198 nmdc:mga06z11_27729_c1 3300050494 Bacteria 2709
199 Ga0495612_0103647 3300053078 Bacteria 1213
200 Ga0495595_0069676 3300053084 Bacteria 1661
201 Ga0495619_0007696 3300053085 Bacteria 6820
202 Ga0500568_0000013 3300053139 Bacteria 224760
203 Ga0500616_0004973 3300053153 Bacteria 9216
204 Ga0501084_0004361 3300054114 Bacteria 11529
205 Ga0501082_0049212 3300060353 Bacteria 3634
206 Ga0501082_0083797 3300060353 Bacteria 2750
207 Ga0501082_0119565 3300060353 Bacteria 2283
208 Ga0530510_0001615 3300061734 Bacteria 15214
209 Ga0530510_0011134 3300061734 Bacteria 6309
210 Ga0530510_0040337 3300061734 Bacteria 3369
211 Ga0530510_0073362 3300061734 Bacteria 2484
212 2839989403 2839986021 Bacteria 3685650
213 Ga0400483_116707
214 JGI25407J50210_10000542
215 Ga0070670_100053584
216 Ga0068869_100141607
217 Ga0070669_100220127
218 Ga0070714_100000944
219 Ga0070714_100011283
220 Ga0070714_100135758
221 Ga0070681_10207878
222 Ga0070665_100145090
223 Ga0068852_100305686
224 Ga0068858_100030192
225 Ga0068860_100010252
226 Ga0068860_100141009
227 Ga0068862_100016673
228 Ga0081455_10001617
229 Ga0081455_10002572
230 Ga0081455_10006881
231 Ga0081455_10085677
232 Ga0075365_10023861
233 Ga0075365_10051982
234 Ga0075363_100026505
235 Ga0075364_10094723
236 Ga0075367_10004682
237 Ga0075367_10088491
238 Ga0075367_10113523
239 Ga0068865_100153448
240 Ga0111539_10016491
241 Ga0105245_10009506
242 Ga0105245_10010815
243 Ga0105245_10145109
244 Ga0105243_10017220
245 Ga0105243_10084222
246 Ga0105242_10002671
247 Ga0105242_10058735
248 Ga0105248_10053136
249 Ga0157369_10228729
250 Ga0157378_10216790
251 Ga0157375_10108207
252 Ga0213876_10016897
253 Ga0213876_10032213
254 Ga0213876_10047234
255 Ga0207642_10003111
256 Ga0207688_10074534
257 Ga0207645_10069480
258 Ga0207707_10155101
259 Ga0207687_10004285
260 Ga0207687_10015752
261 Ga0207664_10152039
262 Ga0207709_10222432
263 Ga0207711_10325290
264 Ga0207712_10115062
265 Ga0207703_10021596
266 Ga0207708_10045371
267 Ga0207641_10031557
268 Ga0207675_100179003
269 Ga0207675_100281563
270 Ga0209813_10021216
271 Ga0268266_10139067
272 Ga0268264_10005815
273 Ga0268264_10030582
274 Ga0265327_10001407
275 Ga0307408_100134030
276 Ga0316576_10021670
277 Ga0316576_10044979
278 Ga0316576_10086890
279 Ga0316576_10089847
280 Ga0316577_10018761
281 Ga0316577_10061607
282 Ga0307413_10077197
283 Ga0307409_100010206
284 Ga0307416_100032413
285 Ga0316574_0010859
286 Ga0316574_0011146
287 Ga0316574_0054431
288 Ga0316574_0061776
289 Ga0316574_0174330
290 Ga0373937_0010033
291 Ga0316582_0018640
292 Ga0316584_0001433
293 Ga0316584_0104469
294 Ga0436364_0353170
295 Ga0436364_0626376
296 Ga0436364_1208874
297 Ga0400485_04900
298 Ga0400483_039773
299 Ga0400483_086726
300 Ga0400483_193515
301 Ga0400483_200168
302 Ga0400483_221257
303 Ga0400483_229484
304 Ga0436365_1001352
305 Ga0436365_1011531
306 Ga0436365_1168654
307 Ga0436365_1182735
308 Ga0436361_0316223
309 Ga0436363_1193621
310 Ga0436362_0376223
311 Ga0436362_0916577
312 Ga0451837_0259751
313 Ga0451853_0096801
314 Ga0439452_020596
315 Ga0450920_007124
316 Ga0466957_0005560
317 Ga0466958_0017610
318 Ga0495641_0056448
319 Ga0495651_0001305
320 Ga0495653_0049293
321 Ga0495639_0017227
322 Ga0495608_0007681
323 Ga0495628_0071977
324 Ga0495630_0209104
325 Ga0495587_0023507
326 Ga0495623_0023220
327 Ga0495647_0022293
328 Ga0495670_0038612
329 Ga0495604_0019491
330 Ga0495604_0099147
331 Ga0495676_0123169
332 Ga0495676_0207462
333 Ga0496103_0131795
334 Ga0496104_0087122
335 Ga0496108_0017170
336 Ga0496108_0022551
337 Ga0496109_0068821
338 Ga0496109_0106117
339 Ga0496110_0001141
340 Ga0496110_0041532
341 Ga0496110_0072800
342 Ga0496110_0093336
343 Ga0496110_0191386
344 Ga0496111_0021536
345 Ga0496111_0073729
346 Ga0496111_0211648
347 Ga0496114_0006342
348 Ga0496114_0022325
349 Ga0496114_0126442
350 Ga0496114_0149089
351 Ga0496126_0043191
352 Ga0501031_0035640
353 Ga0501031_0122482
354 Ga0501032_0022171
355 Ga0501033_0008325
356 Ga0501034_0000814
357 Ga0501034_0005398
358 Ga0501034_0099296
359 Ga0501034_0145531
360 Ga0501034_0151365
361 Ga0501036_0010068
362 Ga0501036_0065725
363 Ga0501036_0081547
364 Ga0501037_0026289
365 Ga0501038_0118299
366 Ga0501038_0193822
367 Ga0501039_0239064
368 Ga0501040_0003138
369 Ga0501041_0006573
370 Ga0501041_0030220
371 Ga0501041_0061277
372 Ga0501041_0138679
373 Ga0501042_0012541
374 Ga0501042_0035666
375 Ga0501046_0023408
376 Ga0501046_0118327
377 Ga0501048_0154611
378 Ga0501067_0016520
379 Ga0501069_0000103
380 Ga0501069_0013899
381 Ga0501070_0000001
382 Ga0501071_0047956
383 Ga0501071_0068497
384 Ga0501072_0005428
385 Ga0501072_0124659
386 Ga0501072_0151814
387 Ga0501074_0038821
388 Ga0501074_0122921
389 Ga0501075_0004687
390 Ga0501075_0030548
391 Ga0501075_0065190
392 Ga0501076_0001570
393 Ga0501076_0027497
394 Ga0501076_0038702
395 Ga0501077_0004142
396 Ga0501079_0008329
397 Ga0501079_0082960
398 Ga0501080_0002607
399 Ga0501080_0182404
400 Ga0501081_0007708
401 Ga0501081_0055770
402 Ga0501035_0056933
403 Ga0501044_0010670
404 Ga0501045_0002564
405 Ga0501045_0009546
406 Ga0501045_0017236
407 Ga0501045_0073417
408 nmdc:mga00v17_7410_c1
409 nmdc:mga0yw44_161787_c1
410 nmdc:mga06z11_27729_c1
411 Ga0495612_0103647
412 Ga0495595_0069676
413 Ga0495619_0007696
414 Ga0500568_0000013
415 Ga0500616_0004973
416 Ga0501084_0004361
417 Ga0501082_0049212
418 Ga0501082_0083797
419 Ga0501082_0119565
420 Ga0530510_0001615
421 Ga0530510_0011134
422 Ga0530510_0040337
423 Ga0530510_0073362
424 2839989403

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02670

DXP_reductoisom

1-deoxy-D-xylulose 5-phosphate reductoisomerase

12

135

0.98

PF13288

DXPR_C

DXP reductoisomerase C-terminal domain

274

391

0.97

PF08436

DXP_redisom_C

1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain

149

233

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5kqo-assembly1.cif.gz_A 1-deoxy-d-xylulose 5-phosphate reductoisomerase from vibrio vulnificus 0.9546 2 381
1r0k-assembly2.cif.gz_D crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase from zymomonas mobilis 0.9515 4 379
1r0l-assembly1.cif.gz_A 1-deoxy-d-xylulose 5-phosphate reductoisomerase from zymomonas mobilis in complex with nadph 0.9484 2 379
6mh5-assembly1.cif.gz_A crystal structure of 1-deoxy-d-xylulose-5-phosphate reductoisomerase from staphylococcus schleiferi in complex with fosmidomycin (fom) 0.9483 3 373
5kry-assembly1.cif.gz_B 1-deoxy-d-xylulose 5-phosphate reductoisomerase from vibrio vulnificus 0.9468 2 384
ID Description Score Start End Superfamily
5kqoA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9515 2 148 3.40.50.720
af_I1MM97_67_222_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9366 3 148 3.40.50.720
4zqhB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.936 3 148 3.40.50.720
1r0lC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9336 3 148 3.40.50.720
1r0kC03 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9309 306 384 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A358CZJ4-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase 0.9869 3 112 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A353GGJ9-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC 1.1.1.267) 0.9811 199 355 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A662BSW1-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase 0.9786 1 84 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A2V6BSR9-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC 1.1.1.267) 0.9785 205 384 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402
AF-A0A645FVU6-F1-model_v4 1-deoxy-D-xylulose-5-phosphate reductoisomerase (EC 1.1.1.267) 0.9769 165 379 GO:0016853
GO:0030145
GO:0030604
GO:0051484
GO:0070402

Map