F322520

General Info

Members Datasets Scaffolds Average Seq Length
212 145 424 482

Family's Representative Sequence

Representative Sequence 3300005440|Ga0070705_100004953|Ga0070705_1000049533
Length 519
Sequence MISLPDDRQQPSPHAQAGNGLNRRFDFTTDLPAADSLGSVHFIAIGGAGMSGVARVMLARGLKVSGSDAKESLVLTALVTEGATVHVGHDASHLEGADTVVISSAIRESNVELREARSRGLRVLHRAQALAVVMQGSRRVAVAGANGKTTTTSMLVVALQHCGVDPSFAVGGELAKHGTNAHHGAGDIFVAEADESDGSFLVYRPEVAVVTNVQPDHLDFYGTFEAVQSAYATFAATVAPNGLLVACEDDPGSRALVDVALAAGTRVVTYGLAPEADVRLTDIGGVGLHAHAQLTRAGRGAIGSSAGSALLGRLEIGMPGRHNLLDATAAFVAATDGLGQDPARVLQGLAGYTGTRRRFEAKGEVAGVRVVDDYAHNPGKVAAVVETASTLADPGRLIVVFQPHLYSRTRDFATELATALSPADIVIVMDVYAAREDPMPGVSGALVTDQLVGCRGHQSGESVRFVPSWSDVAPLVAQVARAGDLVLTVGAGDVTMIGPEILRLLGGRPGATAAGAGLE

Samples

Sample ID Description Type Environment
1 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
7 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
8 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
9 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
10 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
11 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
12 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
17 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
18 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
19 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
24 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
25 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
26 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
27 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
28 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
29 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
39 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
40 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
41 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
42 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
43 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
44 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
45 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
46 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
47 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
48 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
49 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
50 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
51 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
52 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
53 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
54 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
55 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
56 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
57 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
58 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
59 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
60 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
61 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
62 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
63 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
64 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
65 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
66 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
67 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
68 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
69 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
70 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
71 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
72 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
73 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
74 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
75 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
76 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
77 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
78 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
79 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
80 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
81 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
82 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
83 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
84 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
85 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
100 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
101 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
102 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
107 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
108 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
109 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
110 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
115 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
116 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
117 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
118 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
119 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
120 2558860280 Kutzneria sp. 744 Isolate Unclassified
121 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
122 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
123 2643221679 Angustibacter sp. Root456 Isolate Unclassified
124 2643221711 Terrabacter sp. Root85 Isolate Unclassified
125 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
126 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
127 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
128 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
129 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
130 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
131 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
132 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
133 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
134 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
135 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
136 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
137 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
138 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
139 2922554459 Rhodococcus sp. 66b Isolate Unclassified
140 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
141 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
142 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
143 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
144 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
145 3001119090 Lolliginicoccus lacisalsi G463 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.79
Metatranscriptomes 0.94
Isolates 12.26

Biome Distribution

Category Percentage (%)
Aerial Root 0.47
Bulb 0
Endosphere 2.83
Nodule 0
Rhizoplane 13.21
Rhizosphere 70.28
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070705_100004953 3300005440 Bacteria 6487
2 Ga0006562J51391_1020074 3300003578 Bacteria 4250
3 Ga0070683_100088891 3300005329 Bacteria 2899
4 Ga0070683_100133265 3300005329 Bacteria 2352
5 Ga0070683_100135928 3300005329 Bacteria 2328
6 Ga0070683_100205329 3300005329 Bacteria 1871
7 Ga0070680_100053614 3300005336 Bacteria 3293
8 Ga0070671_100004324 3300005355 Bacteria 11238
9 Ga0070667_100005180 3300005367 Bacteria 10897
10 Ga0070679_100080048 3300005530 Bacteria 3256
11 Ga0070684_100146309 3300005535 Bacteria 2139
12 Ga0070693_100025291 3300005547 Bacteria 3194
13 Ga0070665_100055553 3300005548 Bacteria 3971
14 Ga0068854_100027656 3300005578 Bacteria 3912
15 Ga0070702_100001571 3300005615 Bacteria 9415
16 Ga0068852_100015805 3300005616 Bacteria 5868
17 Ga0068870_10060497 3300005840 Bacteria 2033
18 Ga0068863_100001055 3300005841 Bacteria 27537
19 Ga0081455_10120354 3300005937 Bacteria 2069
20 Ga0075364_10022798 3300006051 Bacteria 3959
21 Ga0075364_10102069 3300006051 Bacteria 1910
22 Ga0075370_10059115 3300006353 Bacteria 2181
23 Ga0075370_10070935 3300006353 Bacteria 1993
24 Ga0068865_100054266 3300006881 Bacteria 2784
25 Ga0105245_10130923 3300009098 Bacteria 2353
26 Ga0105243_10000329 3300009148 Bacteria 51977
27 Ga0105243_10030116 3300009148 Bacteria 4177
28 Ga0105242_10007807 3300009176 Bacteria 8234
29 Ga0105238_10005676 3300009551 Bacteria 12335
30 Ga0105249_10108430 3300009553 Bacteria 2622
31 Ga0105249_10308333 3300009553 Bacteria 1590
32 Ga0157375_10063472 3300013308 Bacteria 3675
33 Ga0157380_10054542 3300014326 Bacteria 3172
34 Ga0206353_11496074 3300020082 Bacteria 2271
35 Ga0213876_10000655 3300021384 Bacteria 24852
36 Ga0213876_10006407 3300021384 Bacteria 6416
37 Ga0207647_10033253 3300025904 Bacteria 3303
38 Ga0207643_10068930 3300025908 Bacteria 2032
39 Ga0207652_10079166 3300025921 Bacteria 2871
40 Ga0207691_10042537 3300025940 Bacteria 4188
41 Ga0207712_10121395 3300025961 Bacteria 1978
42 Ga0207658_10016743 3300025986 Bacteria 5045
43 Ga0207641_10018496 3300026088 Bacteria 5713
44 Ga0207648_10109480 3300026089 Bacteria 2425
45 Ga0207683_10020633 3300026121 Bacteria 5639
46 Ga0307511_10000324 3300030521 Bacteria 50832
47 Ga0265327_10000071 3300031251 Bacteria 215502
48 Ga0265327_10007033 3300031251 Bacteria 8818
49 Ga0307413_10116251 3300031824 Bacteria 1802
50 Ga0307409_100021102 3300031995 Bacteria 4457
51 Ga0307409_100028426 3300031995 Bacteria 3984
52 Ga0307409_100075724 3300031995 Bacteria 2696
53 Ga0395900_0173937 3300037418 Bacteria 2191
54 Ga0395898_0041364 3300037466 Bacteria 4553
55 Ga0395905_0056755 3300037471 Bacteria 3663
56 Ga0436364_1300741 3300037853 Bacteria 19842
57 Ga0395901_0063003 3300038443 Bacteria 3859
58 Ga0436365_0634291 3300039437 Bacteria 58106
59 Ga0436365_1109755 3300039437 Bacteria 17199
60 Ga0436365_1744376 3300039437 Bacteria 10916
61 Ga0439461_0002593 3300041410 Bacteria 2907
62 Ga0439466_0002370 3300041411 Bacteria 7381
63 Ga0439465_0004001 3300041413 Bacteria 4803
64 Ga0439465_0026383 3300041413 Bacteria 1837
65 Ga0439465_0041322 3300041413 Bacteria 1492
66 Ga0439445_0005160 3300042004 Bacteria 2970
67 Ga0439434_0002387 3300042435 Bacteria 5454
68 Ga0466965_0000681 3300044683 Bacteria 12531
69 Ga0466966_0040694 3300044684 Bacteria 2990
70 Ga0466966_0064960 3300044684 Bacteria 2296
71 Ga0466963_0148434 3300044694 Bacteria 1628
72 Ga0466971_0008170 3300044719 Bacteria 4561
73 Ga0466968_0001557 3300044735 Bacteria 8259
74 Ga0466970_0002226 3300044765 Bacteria 9360
75 Ga0466957_0003696 3300044842 Bacteria 8448
76 Ga0466957_0039717 3300044842 Bacteria 2840
77 Ga0466960_0000809 3300044901 Bacteria 10991
78 Ga0466960_0003695 3300044901 Bacteria 5909
79 Ga0466959_0000737 3300045049 Bacteria 19124
80 Ga0466958_0019536 3300045836 Bacteria 3945
81 Ga0466967_0021102 3300045976 Bacteria 5279
82 Ga0466967_0076759 3300045976 Bacteria 3006
83 Ga0466967_0078163 3300045976 Bacteria 2980
84 Ga0466967_0120544 3300045976 Bacteria 2422
85 Ga0466967_0134035 3300045976 Bacteria 2302
86 Ga0495638_0021566 3300046460 Bacteria 4242
87 Ga0495653_0050540 3300046463 Bacteria 3197
88 Ga0495665_0040281 3300046531 Bacteria 2488
89 Ga0495668_0000473 3300046616 Bacteria 50763
90 Ga0495635_0161335 3300046663 Bacteria 1526
91 Ga0495658_0016601 3300046683 Bacteria 3790
92 Ga0495624_0090835 3300046690 Bacteria 1884
93 Ga0495674_0022397 3300047319 Bacteria 5827
94 Ga0496100_0009793 3300048903 Bacteria 5398
95 Ga0496100_0067866 3300048903 Bacteria 2370
96 Ga0496101_0006205 3300048904 Bacteria 7686
97 Ga0496101_0029688 3300048904 Bacteria 3825
98 Ga0496101_0241141 3300048904 Bacteria 1407
99 Ga0496102_0001197 3300048905 Bacteria 23545
100 Ga0496102_0023942 3300048905 Bacteria 5427
101 Ga0496102_0051119 3300048905 Bacteria 3765
102 Ga0496102_0118295 3300048905 Bacteria 2473
103 Ga0496103_0004860 3300048906 Bacteria 8116
104 Ga0496103_0039764 3300048906 Bacteria 2890
105 Ga0496104_0007938 3300048907 Bacteria 9412
106 Ga0496104_0040615 3300048907 Bacteria 4361
107 Ga0496104_0063731 3300048907 Bacteria 3496
108 Ga0496104_0116905 3300048907 Bacteria 2559
109 Ga0496105_0005766 3300048908 Bacteria 9441
110 Ga0496105_0007943 3300048908 Bacteria 8245
111 Ga0496105_0037285 3300048908 Bacteria 4003
112 Ga0496108_0019524 3300048911 Bacteria 5567
113 Ga0496108_0055041 3300048911 Bacteria 3340
114 Ga0496109_0186061 3300048912 Bacteria 1951
115 Ga0496110_0016533 3300048913 Bacteria 6160
116 Ga0496110_0051341 3300048913 Bacteria 3623
117 Ga0496113_0068716 3300048916 Bacteria 2689
118 Ga0496113_0135754 3300048916 Bacteria 1933
119 Ga0496114_0004437 3300048917 Bacteria 10890
120 Ga0496114_0006302 3300048917 Bacteria 9337
121 Ga0496114_0014019 3300048917 Bacteria 6425
122 Ga0496118_0000571 3300048921 Bacteria 61051
123 Ga0496126_0034875 3300048929 Bacteria 4720
124 Ga0496126_0212291 3300048929 Bacteria 1629
125 Ga0501031_0008868 3300049568 Bacteria 6536
126 Ga0501032_0004209 3300049569 Bacteria 10893
127 Ga0501032_0069131 3300049569 Bacteria 2357
128 Ga0501033_0021146 3300049570 Bacteria 4911
129 Ga0501034_0000651 3300049571 Bacteria 53413
130 Ga0501034_0128343 3300049571 Bacteria 2520
131 Ga0501036_0023542 3300049572 Bacteria 5189
132 Ga0501036_0029325 3300049572 Bacteria 4651
133 Ga0501037_0009009 3300049573 Bacteria 7311
134 Ga0501039_0009234 3300049575 Bacteria 7515
135 Ga0501040_0006105 3300049576 Bacteria 7814
136 Ga0501041_0002642 3300049577 Bacteria 10217
137 Ga0501042_0005812 3300049578 Bacteria 7968
138 Ga0501043_0002353 3300049579 Bacteria 16028
139 Ga0501046_0002121 3300049580 Bacteria 18766
140 Ga0501046_0007506 3300049580 Bacteria 9570
141 Ga0501047_0013698 3300049581 Bacteria 7697
142 Ga0501047_0037848 3300049581 Bacteria 4666
143 Ga0501048_0019969 3300049582 Bacteria 4912
144 Ga0501067_0001990 3300049583 Bacteria 11247
145 Ga0501067_0099041 3300049583 Bacteria 1619
146 Ga0501068_0015703 3300049584 Bacteria 4354
147 Ga0501069_0017282 3300049585 Bacteria 3880
148 Ga0501069_0087586 3300049585 Bacteria 1759
149 Ga0501070_0001346 3300049586 Bacteria 21986
150 Ga0501070_0001576 3300049586 Bacteria 20285
151 Ga0501070_0004544 3300049586 Bacteria 11909
152 Ga0501070_0008184 3300049586 Bacteria 8843
153 Ga0501071_0002725 3300049587 Bacteria 10825
154 Ga0501071_0014887 3300049587 Bacteria 5329
155 Ga0501072_0023022 3300049588 Bacteria 4837
156 Ga0501072_0029658 3300049588 Bacteria 4274
157 Ga0501074_0002740 3300049590 Bacteria 12326
158 Ga0501074_0004189 3300049590 Bacteria 10304
159 Ga0501074_0005079 3300049590 Bacteria 9447
160 Ga0501074_0011316 3300049590 Bacteria 6487
161 Ga0501075_0001094 3300049591 Bacteria 17459
162 Ga0501077_0011738 3300049593 Bacteria 5477
163 Ga0501077_0049831 3300049593 Bacteria 2661
164 Ga0501077_0059265 3300049593 Bacteria 2430
165 Ga0501079_0010648 3300049741 Bacteria 7001
166 Ga0501080_0006370 3300049742 Bacteria 10587
167 Ga0501080_0007588 3300049742 Bacteria 9808
168 Ga0501080_0060192 3300049742 Bacteria 3534
169 Ga0501080_0096875 3300049742 Bacteria 2739
170 Ga0501081_0009722 3300049743 Bacteria 6271
171 Ga0501083_0000782 3300049744 Bacteria 20897
172 Ga0501083_0027524 3300049744 Bacteria 3923
173 Ga0501035_0008904 3300049822 Bacteria 9340
174 Ga0501035_0016358 3300049822 Bacteria 6840
175 Ga0501044_0000918 3300049823 Bacteria 35481
176 Ga0501044_0011344 3300049823 Bacteria 9656
177 Ga0501044_0067991 3300049823 Bacteria 3630
178 Ga0501045_0010041 3300049824 Bacteria 6623
179 nmdc:mga03n38_16670_c1 3300050490 Bacteria 2863
180 nmdc:mga00v17_118580_c1 3300050491 Bacteria 1684
181 Ga0495619_0081185 3300053085 Bacteria 2183
182 Ga0501084_0010996 3300054114 Bacteria 7496
183 Ga0501084_0195288 3300054114 Bacteria 1707
184 Ga0501082_0005798 3300060353 Bacteria 10721
185 Ga0501082_0019564 3300060353 Bacteria 5839
186 Ga0501082_0122787 3300060353 Bacteria 2252
187 2559429860 2558860280 Bacteria 11429938
188 2643850550 2643221567 Bacteria 4163945
189 2644134308 2643221624 Bacteria 4384879
190 2644446393 2643221679 Bacteria 3839507
191 2644611609 2643221711 Bacteria 4865335
192 2644635250 2643221715 Bacteria 6671032
193 2738886968 2738541308 Bacteria 7020677
194 2739203592 2738543005 Bacteria 5278128
195 2739238212 2738543011 Bacteria 5731169
196 2808873711 2808606365 Bacteria 4301966
197 2812375246 2811994882 Bacteria 4688362
198 2819428015 2818991318 Bacteria 5266538
199 2819668458 2818991458 Bacteria 4794049
200 2819692286 2818991462 Bacteria 4320267
201 2819730042 2818991469 Bacteria 4644110
202 2889302169 2889300758 Bacteria 5690814
203 2902812872 2902810491 Bacteria 6794147
204 2904540115 2904535858 Bacteria 6308016
205 2919450745 2919446982 Bacteria 3994487
206 2922560619 2922554459 Bacteria 6683962
207 2928146331 2928142448 Bacteria 5288925
208 2939748930 2939743619 Bacteria 5762299
209 2956942477 2956939328 Bacteria 3474458
210 2974317083 2974315732 Bacteria 4602776
211 2984525290 2984523437 Bacteria 4508481
212 3001119620 3001119090 Bacteria 3449530
213 Ga0070705_100004953
214 Ga0006562J51391_1020074
215 Ga0070683_100088891
216 Ga0070683_100133265
217 Ga0070683_100135928
218 Ga0070683_100205329
219 Ga0070680_100053614
220 Ga0070671_100004324
221 Ga0070667_100005180
222 Ga0070679_100080048
223 Ga0070684_100146309
224 Ga0070693_100025291
225 Ga0070665_100055553
226 Ga0068854_100027656
227 Ga0070702_100001571
228 Ga0068852_100015805
229 Ga0068870_10060497
230 Ga0068863_100001055
231 Ga0081455_10120354
232 Ga0075364_10022798
233 Ga0075364_10102069
234 Ga0075370_10059115
235 Ga0075370_10070935
236 Ga0068865_100054266
237 Ga0105245_10130923
238 Ga0105243_10000329
239 Ga0105243_10030116
240 Ga0105242_10007807
241 Ga0105238_10005676
242 Ga0105249_10108430
243 Ga0105249_10308333
244 Ga0157375_10063472
245 Ga0157380_10054542
246 Ga0206353_11496074
247 Ga0213876_10000655
248 Ga0213876_10006407
249 Ga0207647_10033253
250 Ga0207643_10068930
251 Ga0207652_10079166
252 Ga0207691_10042537
253 Ga0207712_10121395
254 Ga0207658_10016743
255 Ga0207641_10018496
256 Ga0207648_10109480
257 Ga0207683_10020633
258 Ga0307511_10000324
259 Ga0265327_10000071
260 Ga0265327_10007033
261 Ga0307413_10116251
262 Ga0307409_100021102
263 Ga0307409_100028426
264 Ga0307409_100075724
265 Ga0395900_0173937
266 Ga0395898_0041364
267 Ga0395905_0056755
268 Ga0436364_1300741
269 Ga0395901_0063003
270 Ga0436365_0634291
271 Ga0436365_1109755
272 Ga0436365_1744376
273 Ga0439461_0002593
274 Ga0439466_0002370
275 Ga0439465_0004001
276 Ga0439465_0026383
277 Ga0439465_0041322
278 Ga0439445_0005160
279 Ga0439434_0002387
280 Ga0466965_0000681
281 Ga0466966_0040694
282 Ga0466966_0064960
283 Ga0466963_0148434
284 Ga0466971_0008170
285 Ga0466968_0001557
286 Ga0466970_0002226
287 Ga0466957_0003696
288 Ga0466957_0039717
289 Ga0466960_0000809
290 Ga0466960_0003695
291 Ga0466959_0000737
292 Ga0466958_0019536
293 Ga0466967_0021102
294 Ga0466967_0076759
295 Ga0466967_0078163
296 Ga0466967_0120544
297 Ga0466967_0134035
298 Ga0495638_0021566
299 Ga0495653_0050540
300 Ga0495665_0040281
301 Ga0495668_0000473
302 Ga0495635_0161335
303 Ga0495658_0016601
304 Ga0495624_0090835
305 Ga0495674_0022397
306 Ga0496100_0009793
307 Ga0496100_0067866
308 Ga0496101_0006205
309 Ga0496101_0029688
310 Ga0496101_0241141
311 Ga0496102_0001197
312 Ga0496102_0023942
313 Ga0496102_0051119
314 Ga0496102_0118295
315 Ga0496103_0004860
316 Ga0496103_0039764
317 Ga0496104_0007938
318 Ga0496104_0040615
319 Ga0496104_0063731
320 Ga0496104_0116905
321 Ga0496105_0005766
322 Ga0496105_0007943
323 Ga0496105_0037285
324 Ga0496108_0019524
325 Ga0496108_0055041
326 Ga0496109_0186061
327 Ga0496110_0016533
328 Ga0496110_0051341
329 Ga0496113_0068716
330 Ga0496113_0135754
331 Ga0496114_0004437
332 Ga0496114_0006302
333 Ga0496114_0014019
334 Ga0496118_0000571
335 Ga0496126_0034875
336 Ga0496126_0212291
337 Ga0501031_0008868
338 Ga0501032_0004209
339 Ga0501032_0069131
340 Ga0501033_0021146
341 Ga0501034_0000651
342 Ga0501034_0128343
343 Ga0501036_0023542
344 Ga0501036_0029325
345 Ga0501037_0009009
346 Ga0501039_0009234
347 Ga0501040_0006105
348 Ga0501041_0002642
349 Ga0501042_0005812
350 Ga0501043_0002353
351 Ga0501046_0002121
352 Ga0501046_0007506
353 Ga0501047_0013698
354 Ga0501047_0037848
355 Ga0501048_0019969
356 Ga0501067_0001990
357 Ga0501067_0099041
358 Ga0501068_0015703
359 Ga0501069_0017282
360 Ga0501069_0087586
361 Ga0501070_0001346
362 Ga0501070_0001576
363 Ga0501070_0004544
364 Ga0501070_0008184
365 Ga0501071_0002725
366 Ga0501071_0014887
367 Ga0501072_0023022
368 Ga0501072_0029658
369 Ga0501074_0002740
370 Ga0501074_0004189
371 Ga0501074_0005079
372 Ga0501074_0011316
373 Ga0501075_0001094
374 Ga0501077_0011738
375 Ga0501077_0049831
376 Ga0501077_0059265
377 Ga0501079_0010648
378 Ga0501080_0006370
379 Ga0501080_0007588
380 Ga0501080_0060192
381 Ga0501080_0096875
382 Ga0501081_0009722
383 Ga0501083_0000782
384 Ga0501083_0027524
385 Ga0501035_0008904
386 Ga0501035_0016358
387 Ga0501044_0000918
388 Ga0501044_0011344
389 Ga0501044_0067991
390 Ga0501045_0010041
391 nmdc:mga03n38_16670_c1
392 nmdc:mga00v17_118580_c1
393 Ga0495619_0081185
394 Ga0501084_0010996
395 Ga0501084_0195288
396 Ga0501082_0005798
397 Ga0501082_0019564
398 Ga0501082_0122787
399 2559429860
400 2643850550
401 2644134308
402 2644446393
403 2644611609
404 2644635250
405 2738886968
406 2739203592
407 2739238212
408 2808873711
409 2812375246
410 2819428015
411 2819668458
412 2819692286
413 2819730042
414 2889302169
415 2902812872
416 2904540115
417 2919450745
418 2922560619
419 2928146331
420 2939748930
421 2956942477
422 2974317083
423 2984525290
424 3001119620

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01225

Mur_ligase

Mur ligase family, catalytic domain

39

138

0.98

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

357

492

0.93

PF08245

Mur_ligase_M

Mur ligase middle domain

142

334

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
6cau-assembly1.cif.gz_A udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii ab5075-uw with amppnp 0.9638 30 338
6cau-assembly1.cif.gz_A udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii ab5075-uw with amppnp 0.9424 30 338
7bva-assembly2.cif.gz_B crystal structure of udp-n-acetylmuramic acid l-alanine ligase (murc) from mycobacterium bovis 0.9418 24 486
7bvb-assembly1.cif.gz_A crystal structure of udp-n-acetylmuramic acid l-alanine ligase (murc) from mycobacterium bovis in complex with udp-n-acetylglucosamine 0.9338 24 486
1gqy-assembly1.cif.gz_A murc - crystal structure of the enzyme from haemophilus influenzae complexed with amppcp 0.9262 21 486
ID Description Score Start End Superfamily
1gqqB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9812 35 118 3.40.50.720
af_P9WJL7_104_328_3.40.1190.10 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9774 124 337 3.40.1190.10
af_P9WJL7_8_102_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.973 30 118 3.40.50.720
1j6uA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9638 33 117 3.40.50.720
2f00B02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9618 128 338 3.40.1190.10
ID Description Score Start End GO Terms
AF-A0A6G8PXB3-F1-model_v4 Mur ligase N-terminal catalytic domain-containing protein 0.985 33 120 GO:0009058
GO:0016881
AF-A0A3D3RNP4-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) 0.9738 29 270 GO:0005524
GO:0008763
GO:0009058
AF-A0A7R9NG71-F1-model_v4 deleted 0.971 30 110
AF-A0A7C7I3J7-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) 0.9698 30 117 GO:0008763
GO:0009058
GO:0016020
AF-K0YI50-F1-model_v4 Multifunctional fusion protein [Includes: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase); UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) (UDP-N-acetylmuramoyl-L-alanine synthetase)] 0.9693 30 490 GO:0005524
GO:0005737
GO:0005886
GO:0005975
GO:0008360
GO:0008763
GO:0009252
GO:0030259
GO:0050511
GO:0051301
GO:0051991
GO:0071555

Map