F322127

General Info

Members Datasets Scaffolds Average Seq Length
211 158 203 361

Family's Representative Sequence

Representative Sequence 3300049823|Ga0501044_0133557|Ga0501044_0133557_1265_2401
Length 378
Sequence MSGTPIQEFPMPRGPKPTPITLTEDERTKLTDWARRPTSAQRLALRAKIALAAADGHTNATIAADLRVTVPTVRKWRERFSERRLEGLADEPRPGTPRTITDEQVEAAVTRTLESKPANATHWSTRTLARELGLSQTAVVRIWHAFGLKPHRRSSFKLSSDPFFVEKVRDIVGLYMTPPQKAIVLCVDEKSQIQALDRTHPIQPLLPGRSEKASHDYVRHGTTSLFAALDVATGKVIGRCHQQHRHQEFLAFLGHLDATLTRKPHTTIHVVMDNYGTHKHPRVRDWFVRHPEFVPHFTPTSSSWLNQVERFFAQITERRIRRGAFRSVAELEQAIEDYLRSHNQNPRPFVWTKNADVILNKVRKLAERLAPDKPATNF

Samples

Sample ID Description Type Environment
1 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified
2 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
3 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
4 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
5 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
6 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
7 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
8 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
9 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
10 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
12 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
13 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
14 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
15 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
16 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
17 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
20 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
21 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
22 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
23 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
24 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
25 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
26 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
29 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
30 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
31 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
32 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
33 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
34 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
39 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
40 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
41 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
58 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
59 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
60 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028023 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 Metagenome Rhizosphere
76 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
77 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
78 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
79 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
80 3300031018 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
81 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
82 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
83 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
84 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
85 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
86 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
91 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
92 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
93 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
94 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
95 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
96 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
97 3300044536 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA2E Metagenome Unclassified
98 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
99 3300044663 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA2E_TR Metagenome Unclassified
100 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
101 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
102 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
103 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
104 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
109 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
110 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
111 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
112 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
113 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
114 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
115 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
116 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
117 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
118 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
119 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
120 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
121 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
122 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
123 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
139 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
140 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
141 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
142 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
143 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
144 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
148 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
149 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
150 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
151 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
152 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
153 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
154 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
155 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
156 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
157 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
158 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.73
Metatranscriptomes 0.47
Isolates 3.79

Biome Distribution

Category Percentage (%)
Aerial Root 0.47
Bulb 0
Endosphere 1.42
Nodule 0
Rhizoplane 7.11
Rhizosphere 83.89
Stem 0
Stem Tuber 0
Unclassified 7.11

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 CNXas_1002686 3300000545 Bacteria 1238
2 LJQas_1007135 3300000549 Bacteria 1376
3 JGI25407J50210_10038739 3300003373 Bacteria 1223
4 JGI25404J52841_10029236 3300003659 Bacteria 1182
5 JGI25405J52794_10016736 3300003911 Bacteria 1451
6 Ga0065707_10018834 3300005295 Bacteria 1714
7 Ga0070658_10287022 3300005327 Bacteria 1402
8 Ga0070683_100458123 3300005329 Bacteria 1217
9 Ga0070670_100190802 3300005331 Bacteria 1780
10 Ga0070660_100302112 3300005339 Bacteria 1312
11 Ga0070660_100333156 3300005339 Bacteria 1248
12 Ga0070691_10102656 3300005341 Bacteria 1422
13 Ga0070661_100033398 3300005344 Unclassified 3726
14 Ga0070659_100290136 3300005366 Bacteria 1362
15 Ga0070703_10041949 3300005406 Bacteria 1429
16 Ga0070709_10214882 3300005434 Bacteria 1368
17 Ga0070714_100133600 3300005435 Bacteria 2219
18 Ga0070713_100168833 3300005436 Bacteria 1959
19 Ga0070711_100136829 3300005439 Bacteria 1832
20 Ga0070708_100324120 3300005445 Unclassified 1451
21 Ga0070678_100237908 3300005456 Bacteria 1521
22 Ga0070662_100287831 3300005457 Bacteria 1331
23 Ga0070681_10190682 3300005458 Bacteria 1969
24 Ga0070707_100051885 3300005468 Plasmid 3931
25 Ga0070698_100304127 3300005471 Bacteria 1525
26 Ga0070699_100061478 3300005518 Bacteria 3254
27 Ga0070679_100199322 3300005530 Bacteria 1968
28 Ga0070679_100447283 3300005530 Bacteria 1237
29 Ga0070684_100254800 3300005535 Bacteria 1604
30 Ga0070684_100379007 3300005535 Bacteria 1303
31 Ga0070697_100244719 3300005536 Bacteria 1532
32 Ga0068853_100118251 3300005539 Bacteria 2362
33 Ga0070664_100381127 3300005564 Bacteria 1287
34 Ga0068856_100198205 3300005614 Bacteria 2022
35 Ga0081455_10049165 3300005937 Bacteria 3637
36 Ga0081455_10287918 3300005937 Bacteria 1184
37 Ga0081538_10105023 3300005981 Bacteria 1407
38 Ga0081540_1013888 3300005983 Bacteria 5203
39 Ga0081540_1014283 3300005983 Bacteria 5098
40 Ga0081540_1065001 3300005983 Bacteria 1718
41 Ga0081540_1103428 3300005983 Bacteria 1221
42 Ga0081539_10012664 3300005985 Bacteria 6466
43 Ga0070717_10191660 3300006028 Unclassified 1786
44 Ga0070717_10419334 3300006028 Bacteria 1204
45 Ga0075428_100422640 3300006844 Bacteria 1428
46 Ga0075430_100320808 3300006846 Bacteria 1280
47 Ga0075431_100183820 3300006847 Bacteria 2145
48 Ga0075431_100276767 3300006847 Bacteria 1700
49 Ga0075433_10078022 3300006852 Bacteria 2918
50 Ga0075434_100482562 3300006871 Bacteria 1260
51 Ga0105240_10131137 3300009093 Bacteria 3007
52 Ga0114129_10349406 3300009147 Bacteria 1959
53 Ga0114129_10480618 3300009147 Bacteria 1625
54 Ga0114129_10483089 3300009147 Bacteria 1620
55 Ga0105241_10265914 3300009174 Bacteria 1459
56 Ga0105237_10312968 3300009545 Bacteria 1573
57 Ga0105249_10574494 3300009553 Bacteria 1180
58 Ga0105246_10261215 3300011119 Bacteria 1380
59 Ga0157373_10184079 3300013100 Bacteria 1471
60 Ga0157369_10430093 3300013105 Bacteria 1368
61 Ga0157372_10444174 3300013307 Bacteria 1512
62 Ga0163163_10164429 3300014325 Bacteria 2265
63 Ga0157380_10237814 3300014326 Bacteria 1640
64 Ga0213875_10001120 3300021388 Bacteria 18489
65 Ga0213875_10136884 3300021388 Bacteria 1145
66 Ga0209129_1019733 3300025258 Bacteria 1268
67 Ga0209675_1033669 3300025291 Bacteria 1186
68 Ga0207653_10049615 3300025885 Bacteria 1394
69 Ga0207699_10043840 3300025906 Bacteria 2601
70 Ga0207684_10129239 3300025910 Bacteria 2168
71 Ga0207660_10079673 3300025917 Unclassified 2403
72 Ga0207657_10296090 3300025919 Bacteria 1282
73 Ga0207649_10171846 3300025920 Bacteria 1510
74 Ga0207652_10380526 3300025921 Bacteria 1274
75 Ga0207650_10332831 3300025925 Bacteria 1246
76 Ga0207664_10273738 3300025929 Bacteria 1480
77 Ga0207664_10360905 3300025929 Bacteria 1287
78 Ga0207661_10408189 3300025944 Bacteria 1232
79 Ga0207667_10086673 3300025949 Unclassified 3240
80 Ga0207639_10090514 3300026041 Bacteria 2447
81 Ga0207678_10201457 3300026067 Bacteria 1702
82 Ga0207702_10247940 3300026078 Bacteria 1671
83 Ga0265357_1003540 3300028023 Bacteria 1357
84 Ga0265334_10022096 3300028573 Bacteria 2595
85 Ga0265318_10035731 3300028577 Bacteria 1909
86 Ga0265323_10011582 3300028653 Bacteria 3555
87 Ga0265338_10085998 3300028800 Bacteria 2619
88 Ga0265338_10262660 3300028800 Bacteria 1268
89 Ga0265773_1000064 3300031018 Bacteria 2621
90 Ga0265330_10108346 3300031235 Bacteria 1187
91 Ga0265320_10056078 3300031240 Bacteria 1895
92 Ga0265340_10024034 3300031247 Bacteria 3099
93 Ga0307508_10000251 3300031616 Bacteria 65275
94 Ga0265342_10109980 3300031712 Bacteria 1560
95 Ga0307516_10174782 3300031730 Bacteria 1885
96 Ga0307410_10326474 3300031852 Bacteria 1219
97 Ga0307409_100468021 3300031995 Bacteria 1220
98 Ga0307416_100424384 3300032002 Bacteria 1375
99 Ga0307416_100510476 3300032002 Bacteria 1268
100 Ga0373931_0199125 3300035691 Bacteria 1195
101 Ga0436364_0725790 3300037853 Bacteria 1160
102 Ga0436365_1041865 3300039437 Bacteria 1919
103 Ga0436365_1789765 3300039437 Bacteria 2813
104 Ga0436361_0113510 3300039447 Unclassified 1319
105 Ga0436362_1293739 3300039453 Bacteria 1475
106 Ga0451841_0135466 3300041498 Bacteria 1931
107 Ga0439451_019971 3300042009 Bacteria 1350
108 Ga0466988_0036793 3300044536 Bacteria 2815
109 Ga0466972_0140569 3300044658 Bacteria 1136
110 Ga0466989_0135652 3300044663 Bacteria 1494
111 Ga0466965_0089247 3300044683 Bacteria 1566
112 Ga0466965_0107261 3300044683 Bacteria 1433
113 Ga0466966_0216257 3300044684 Bacteria 1157
114 Ga0466961_0045751 3300044693 Bacteria 2799
115 Ga0466963_0113445 3300044694 Bacteria 1861
116 Ga0466970_0104706 3300044765 Bacteria 1542
117 Ga0466970_0159903 3300044765 Bacteria 1245
118 Ga0466959_0093510 3300045049 Bacteria 2157
119 Ga0466959_0196457 3300045049 Bacteria 1406
120 Ga0466958_0053908 3300045836 Bacteria 2438
121 Ga0466958_0144764 3300045836 Bacteria 1497
122 Ga0466958_0239448 3300045836 Bacteria 1159
123 Ga0466967_0209239 3300045976 Bacteria 1849
124 Ga0466967_0269093 3300045976 Bacteria 1632
125 Ga0466967_0372478 3300045976 Bacteria 1385
126 Ga0495650_0000104 3300046471 Bacteria 208976
127 Ga0495607_0052517 3300046501 Bacteria 2361
128 Ga0495665_0165230 3300046531 Bacteria 1153
129 Ga0495598_0028049 3300046537 Bacteria 1558
130 Ga0495656_0058834 3300046615 Bacteria 1669
131 Ga0495669_0093378 3300046684 Bacteria 1391
132 Ga0495670_0069607 3300046691 Bacteria 1779
133 Ga0495636_0064943 3300047318 Bacteria 1549
134 Ga0495636_0091317 3300047318 Bacteria 1322
135 Ga0496100_0246824 3300048903 Bacteria 1319
136 Ga0496102_0413308 3300048905 Bacteria 1267
137 Ga0496102_0512843 3300048905 Bacteria 1121
138 Ga0496103_0180604 3300048906 Bacteria 1356
139 Ga0496103_0194938 3300048906 Bacteria 1302
140 Ga0496104_0162366 3300048907 Bacteria 2143
141 Ga0496108_0323451 3300048911 Bacteria 1344
142 Ga0496108_0331912 3300048911 Bacteria 1326
143 Ga0496108_0402588 3300048911 Bacteria 1195
144 Ga0496109_0221538 3300048912 Bacteria 1779
145 Ga0496109_0347224 3300048912 Bacteria 1401
146 Ga0496110_0088151 3300048913 Bacteria 2771
147 Ga0496110_0369808 3300048913 Bacteria 1306
148 Ga0496111_0193444 3300048914 Bacteria 1512
149 Ga0496112_0369742 3300048915 Bacteria 1375
150 Ga0501031_0007408 3300049568 Bacteria 7150
151 Ga0501032_0083560 3300049569 Bacteria 2123
152 Ga0501033_0126914 3300049570 Bacteria 1849
153 Ga0501033_0140347 3300049570 Bacteria 1747
154 Ga0501034_0074637 3300049571 Bacteria 3399
155 Ga0501034_0166667 3300049571 Bacteria 2171
156 Ga0501034_0179208 3300049571 Bacteria 2084
157 Ga0501034_0333808 3300049571 Bacteria 1447
158 Ga0501034_0340383 3300049571 Bacteria 1430
159 Ga0501036_0300027 3300049572 Bacteria 1344
160 Ga0501037_0038700 3300049573 Bacteria 3513
161 Ga0501037_0128540 3300049573 Bacteria 1817
162 Ga0501038_0115900 3300049574 Bacteria 2214
163 Ga0501039_0152813 3300049575 Bacteria 1813
164 Ga0501042_0234298 3300049578 Bacteria 1324
165 Ga0501043_0068400 3300049579 Bacteria 2788
166 Ga0501046_0099784 3300049580 Bacteria 2228
167 Ga0501046_0152157 3300049580 Bacteria 1745
168 Ga0501047_0012513 3300049581 Bacteria 8036
169 Ga0501047_0383282 3300049581 Bacteria 1240
170 Ga0501048_0069385 3300049582 Bacteria 2489
171 Ga0501070_0211185 3300049586 Bacteria 1593
172 Ga0501070_0256273 3300049586 Bacteria 1430
173 Ga0501070_0302286 3300049586 Bacteria 1303
174 Ga0501070_0322514 3300049586 Bacteria 1256
175 Ga0501071_0200605 3300049587 Bacteria 1498
176 Ga0501073_0207644 3300049589 Bacteria 1353
177 Ga0501073_0255273 3300049589 Bacteria 1210
178 Ga0501076_0321944 3300049592 Bacteria 1268
179 Ga0501077_0220679 3300049593 Bacteria 1205
180 Ga0501080_0137093 3300049742 Bacteria 2264
181 Ga0501080_0393516 3300049742 Bacteria 1247
182 Ga0501083_0167330 3300049744 Bacteria 1437
183 Ga0501035_0249573 3300049822 Bacteria 1507
184 Ga0501044_0048286 3300049823 Bacteria 4398
185 Ga0501044_0133557 3300049823 Bacteria 2474
186 Ga0501044_0366361 3300049823 Bacteria 1358
187 Ga0501044_0374869 3300049823 Bacteria 1339
188 nmdc:mga05p37_459478_c1 3300050507 Bacteria 1472
189 nmdc:mga05p37_532287_c1 3300050507 Bacteria 1342
190 nmdc:mga05p37_576590_c1 3300050507 Bacteria 1275
191 nmdc:mga0qj67_140964_c1 3300050509 Bacteria 1955
192 nmdc:mga06r32_124771_c1 3300050510 Bacteria 2542
193 nmdc:mga06r32_42007_c1 3300050510 Bacteria 4346
194 nmdc:mga08y16_361535_c1 3300050511 Bacteria 1490
195 nmdc:mga0n895_427487_c1 3300050512 Bacteria 1339
196 nmdc:mga0rr50_95888_c1 3300050513 Bacteria 2320
197 nmdc:mga0a205_287611_c1 3300050515 Bacteria 1519
198 Ga0500636_0118434 3300053177 Bacteria 1488
199 Ga0501084_0322222 3300054114 Bacteria 1305
200 Ga0501082_0284790 3300060353 Bacteria 1439
201 Ga0501082_0374169 3300060353 Bacteria 1243
202 Ga0530510_0242844 3300061734 Bacteria 1341
203 Ga0530510_0270765 3300061734 Bacteria 1267

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049592 Ga0501076_0321944 Ga0501076_0321944_188_1180 308
2 3300009553 Ga0105249_10574494 Ga0105249_105744941 319
3 3300031730 Ga0307516_10174782 Ga0307516_101747822 321
4 3300049571 Ga0501034_0074637 Ga0501034_0074637_1639_2730 323
5 3300035691 Ga0373931_0199125 Ga0373931_0199125_35_1096 328
6 3300039453 Ga0436362_1293739 Ga0436362_1293739_121_1110 329
7 iso_pu_bacteria 8016728285 8016728457 333
8 3300005295 Ga0065707_10018834 Ga0065707_100188342 334
9 3300041498 Ga0451841_0135466 Ga0451841_0135466_716_1837 335
10 3300049571 Ga0501034_0340383 Ga0501034_0340383_304_1311 335
11 3300046471 Ga0495650_0000104 Ga0495650_0000104_207793_208806 337
12 3300021388 Ga0213875_10001120 Ga0213875_1000112017 339
13 3300045836 Ga0466958_0053908 Ga0466958_0053908_1154_2275 339
14 3300045976 Ga0466967_0209239 Ga0466967_0209239_196_1317 339
15 3300005983 Ga0081540_1065001 Ga0081540_10650012 340
16 3300049580 Ga0501046_0152157 Ga0501046_0152157_542_1696 343
17 3300060353 Ga0501082_0284790 Ga0501082_0284790_137_1291 343
18 3300037853 Ga0436364_0725790 Ga0436364_0725790_57_1124 345
19 iso_pu_bacteria 2984504281 2984504929 345
20 iso_pu_bacteria 8016728285 8016733231 345
21 iso_pu_bacteria 2901300506 2901310356 347
22 iso_pu_bacteria 2901300506 2901311470 347
23 3300049586 Ga0501070_0322514 Ga0501070_0322514_51_1115 348
24 3300049823 Ga0501044_0374869 Ga0501044_0374869_88_1152 348
25 3300048905 Ga0496102_0413308 Ga0496102_0413308_187_1242 351
26 3300048906 Ga0496103_0180604 Ga0496103_0180604_179_1234 351
27 3300053177 Ga0500636_0118434 Ga0500636_0118434_301_1365 351
28 3300021388 Ga0213875_10136884 Ga0213875_101368841 352
29 3300046501 Ga0495607_0052517 Ga0495607_0052517_1224_2282 352
30 3300046537 Ga0495598_0028049 Ga0495598_0028049_177_1235 352
31 3300046615 Ga0495656_0058834 Ga0495656_0058834_115_1173 352
32 3300046684 Ga0495669_0093378 Ga0495669_0093378_228_1286 352
33 3300046691 Ga0495670_0069607 Ga0495670_0069607_505_1563 352
34 3300049593 Ga0501077_0220679 Ga0501077_0220679_72_1139 353
35 iso_pu_bacteria 2917832318 2917835630 354
36 iso_pu_bacteria 2919125081 2919128212 354
37 3300048912 Ga0496109_0221538 Ga0496109_0221538_600_1676 357
38 3300028573 Ga0265334_10022096 Ga0265334_100220962 358
39 3300028577 Ga0265318_10035731 Ga0265318_100357311 358
40 3300028800 Ga0265338_10085998 Ga0265338_100859983 358
41 3300031235 Ga0265330_10108346 Ga0265330_101083461 358
42 3300031240 Ga0265320_10056078 Ga0265320_100560782 358
43 3300031247 Ga0265340_10024034 Ga0265340_100240343 358
44 3300031712 Ga0265342_10109980 Ga0265342_101099801 358
45 3300044536 Ga0466988_0036793 Ga0466988_0036793_846_1925 358
46 3300044663 Ga0466989_0135652 Ga0466989_0135652_55_1134 358
47 3300044683 Ga0466965_0107261 Ga0466965_0107261_149_1228 358
48 3300044694 Ga0466963_0113445 Ga0466963_0113445_611_1690 358
49 3300044765 Ga0466970_0104706 Ga0466970_0104706_437_1516 358
50 3300047318 Ga0495636_0064943 Ga0495636_0064943_436_1518 358
51 3300049568 Ga0501031_0007408 Ga0501031_0007408_46_1131 358
52 3300049569 Ga0501032_0083560 Ga0501032_0083560_538_1623 358
53 3300049570 Ga0501033_0126914 Ga0501033_0126914_737_1822 358
54 3300049570 Ga0501033_0140347 Ga0501033_0140347_231_1310 358
55 3300049572 Ga0501036_0300027 Ga0501036_0300027_106_1191 358
56 3300049573 Ga0501037_0128540 Ga0501037_0128540_535_1620 358
57 3300049574 Ga0501038_0115900 Ga0501038_0115900_298_1383 358
58 3300049575 Ga0501039_0152813 Ga0501039_0152813_461_1546 358
59 3300049578 Ga0501042_0234298 Ga0501042_0234298_121_1206 358
60 3300049580 Ga0501046_0099784 Ga0501046_0099784_675_1760 358
61 3300049581 Ga0501047_0012513 Ga0501047_0012513_1177_2262 358
62 3300049582 Ga0501048_0069385 Ga0501048_0069385_85_1170 358
63 3300049586 Ga0501070_0302286 Ga0501070_0302286_146_1231 358
64 3300049742 Ga0501080_0393516 Ga0501080_0393516_75_1160 358
65 3300061734 Ga0530510_0242844 Ga0530510_0242844_201_1283 358
66 3300005331 Ga0070670_100190802 Ga0070670_1001908022 359
67 3300005535 Ga0070684_100254800 Ga0070684_1002548001 359
68 3300005564 Ga0070664_100381127 Ga0070664_1003811271 359
69 3300014325 Ga0163163_10164429 Ga0163163_101644292 359
70 3300025925 Ga0207650_10332831 Ga0207650_103328311 359
71 3300025944 Ga0207661_10408189 Ga0207661_104081891 359
72 3300039437 Ga0436365_1789765 Ga0436365_1789765_1488_2576 359
73 iso_pu_bacteria 2939631187 2939636755 359
74 3300003373 JGI25407J50210_10038739 JGI25407J50210_100387391 360
75 3300003659 JGI25404J52841_10029236 JGI25404J52841_100292361 360
76 3300005327 Ga0070658_10287022 Ga0070658_102870221 360
77 3300005329 Ga0070683_100458123 Ga0070683_1004581231 360
78 3300005339 Ga0070660_100302112 Ga0070660_1003021121 360
79 3300005339 Ga0070660_100333156 Ga0070660_1003331561 360
80 3300005341 Ga0070691_10102656 Ga0070691_101026561 360
81 3300005344 Ga0070661_100033398 Ga0070661_1000333983 360
82 3300005366 Ga0070659_100290136 Ga0070659_1002901361 360
83 3300005434 Ga0070709_10214882 Ga0070709_102148821 360
84 3300005435 Ga0070714_100133600 Ga0070714_1001336001 360
85 3300005436 Ga0070713_100168833 Ga0070713_1001688332 360
86 3300005458 Ga0070681_10190682 Ga0070681_101906821 360
87 3300005530 Ga0070679_100199322 Ga0070679_1001993222 360
88 3300005614 Ga0068856_100198205 Ga0068856_1001982052 360
89 3300005937 Ga0081455_10049165 Ga0081455_100491652 360
90 3300005937 Ga0081455_10287918 Ga0081455_102879181 360
91 3300005981 Ga0081538_10105023 Ga0081538_101050231 360
92 3300005983 Ga0081540_1014283 Ga0081540_10142833 360
93 3300006028 Ga0070717_10419334 Ga0070717_104193341 360
94 3300009093 Ga0105240_10131137 Ga0105240_101311372 360
95 3300009545 Ga0105237_10312968 Ga0105237_103129682 360
96 3300013100 Ga0157373_10184079 Ga0157373_101840792 360
97 3300013105 Ga0157369_10430093 Ga0157369_104300931 360
98 3300025906 Ga0207699_10043840 Ga0207699_100438402 360
99 3300025917 Ga0207660_10079673 Ga0207660_100796731 360
100 3300025919 Ga0207657_10296090 Ga0207657_102960901 360
101 3300025920 Ga0207649_10171846 Ga0207649_101718462 360
102 3300025929 Ga0207664_10273738 Ga0207664_102737382 360
103 3300025929 Ga0207664_10360905 Ga0207664_103609051 360
104 3300025949 Ga0207667_10086673 Ga0207667_100866733 360
105 3300026078 Ga0207702_10247940 Ga0207702_102479402 360
106 3300028800 Ga0265338_10262660 Ga0265338_102626601 360
107 3300031616 Ga0307508_10000251 Ga0307508_1000025159 360
108 3300048913 Ga0496110_0369808 Ga0496110_0369808_115_1200 360
109 3300049571 Ga0501034_0166667 Ga0501034_0166667_539_1660 360
110 3300049744 Ga0501083_0167330 Ga0501083_0167330_198_1283 360
111 3300060353 Ga0501082_0374169 Ga0501082_0374169_59_1144 360
112 3300003911 JGI25405J52794_10016736 JGI25405J52794_100167362 361
113 3300005456 Ga0070678_100237908 Ga0070678_1002379081 361
114 3300005457 Ga0070662_100287831 Ga0070662_1002878311 361
115 3300005535 Ga0070684_100379007 Ga0070684_1003790071 361
116 3300009174 Ga0105241_10265914 Ga0105241_102659141 361
117 3300011119 Ga0105246_10261215 Ga0105246_102612152 361
118 3300013307 Ga0157372_10444174 Ga0157372_104441741 361
119 3300025258 Ga0209129_1019733 Ga0209129_10197331 361
120 3300025291 Ga0209675_1033669 Ga0209675_10336691 361
121 3300026067 Ga0207678_10201457 Ga0207678_102014571 361
122 3300031852 Ga0307410_10326474 Ga0307410_103264741 361
123 3300032002 Ga0307416_100510476 Ga0307416_1005104761 361
124 3300045976 Ga0466967_0372478 Ga0466967_0372478_44_1129 361
125 3300046531 Ga0495665_0165230 Ga0495665_0165230_42_1127 361
126 3300048903 Ga0496100_0246824 Ga0496100_0246824_153_1238 361
127 3300048905 Ga0496102_0512843 Ga0496102_0512843_25_1110 361
128 3300048906 Ga0496103_0194938 Ga0496103_0194938_123_1208 361
129 3300048907 Ga0496104_0162366 Ga0496104_0162366_176_1261 361
130 3300048911 Ga0496108_0323451 Ga0496108_0323451_170_1255 361
131 3300048911 Ga0496108_0331912 Ga0496108_0331912_104_1192 361
132 3300048912 Ga0496109_0347224 Ga0496109_0347224_209_1294 361
133 3300048913 Ga0496110_0088151 Ga0496110_0088151_1555_2643 361
134 3300048914 Ga0496111_0193444 Ga0496111_0193444_225_1310 361
135 3300048915 Ga0496112_0369742 Ga0496112_0369742_122_1207 361
136 3300049571 Ga0501034_0179208 Ga0501034_0179208_291_1379 361
137 3300049581 Ga0501047_0383282 Ga0501047_0383282_46_1134 361
138 3300049586 Ga0501070_0256273 Ga0501070_0256273_234_1322 361
139 3300049587 Ga0501071_0200605 Ga0501071_0200605_238_1326 361
140 3300049589 Ga0501073_0207644 Ga0501073_0207644_171_1259 361
141 3300049589 Ga0501073_0255273 Ga0501073_0255273_54_1142 361
142 3300049742 Ga0501080_0137093 Ga0501080_0137093_634_1725 361
143 3300049822 Ga0501035_0249573 Ga0501035_0249573_400_1488 361
144 3300049823 Ga0501044_0048286 Ga0501044_0048286_817_1905 361
145 3300005530 Ga0070679_100447283 Ga0070679_1004472831 362
146 3300005985 Ga0081539_10012664 Ga0081539_100126642 362
147 3300006844 Ga0075428_100422640 Ga0075428_1004226402 362
148 3300006846 Ga0075430_100320808 Ga0075430_1003208082 362
149 3300006847 Ga0075431_100183820 Ga0075431_1001838202 362
150 3300006847 Ga0075431_100276767 Ga0075431_1002767672 362
151 3300006852 Ga0075433_10078022 Ga0075433_100780223 362
152 3300006871 Ga0075434_100482562 Ga0075434_1004825621 362
153 3300009147 Ga0114129_10349406 Ga0114129_103494061 362
154 3300009147 Ga0114129_10480618 Ga0114129_104806182 362
155 3300009147 Ga0114129_10483089 Ga0114129_104830892 362
156 3300014326 Ga0157380_10237814 Ga0157380_102378142 362
157 3300025921 Ga0207652_10380526 Ga0207652_103805261 362
158 3300028653 Ga0265323_10011582 Ga0265323_100115826 362
159 3300031995 Ga0307409_100468021 Ga0307409_1004680211 362
160 3300039437 Ga0436365_1041865 Ga0436365_1041865_321_1409 362
161 3300042009 Ga0439451_019971 Ga0439451_019971_66_1154 362
162 3300044658 Ga0466972_0140569 Ga0466972_0140569_22_1119 362
163 3300044683 Ga0466965_0089247 Ga0466965_0089247_448_1545 362
164 3300044684 Ga0466966_0216257 Ga0466966_0216257_44_1141 362
165 3300044693 Ga0466961_0045751 Ga0466961_0045751_93_1190 362
166 3300044765 Ga0466970_0159903 Ga0466970_0159903_37_1134 362
167 3300045049 Ga0466959_0093510 Ga0466959_0093510_55_1152 362
168 3300045976 Ga0466967_0269093 Ga0466967_0269093_436_1551 362
169 3300048911 Ga0496108_0402588 Ga0496108_0402588_51_1139 362
170 3300050507 nmdc:mga05p37_459478_c1 nmdc:mga05p37_459478_c1_322_1410 362
171 3300050507 nmdc:mga05p37_532287_c1 nmdc:mga05p37_532287_c1_14_1102 362
172 3300050507 nmdc:mga05p37_576590_c1 nmdc:mga05p37_576590_c1_47_1135 362
173 3300050509 nmdc:mga0qj67_140964_c1 nmdc:mga0qj67_140964_c1_74_1162 362
174 3300050510 nmdc:mga06r32_124771_c1 nmdc:mga06r32_124771_c1_302_1390 362
175 3300050510 nmdc:mga06r32_42007_c1 nmdc:mga06r32_42007_c1_1152_2240 362
176 3300050511 nmdc:mga08y16_361535_c1 nmdc:mga08y16_361535_c1_75_1163 362
177 3300050512 nmdc:mga0n895_427487_c1 nmdc:mga0n895_427487_c1_155_1243 362
178 3300050513 nmdc:mga0rr50_95888_c1 nmdc:mga0rr50_95888_c1_161_1249 362
179 3300050515 nmdc:mga0a205_287611_c1 nmdc:mga0a205_287611_c1_35_1123 362
180 3300000545 CNXas_1002686 CNXas_10026861 363
181 3300000549 LJQas_1007135 LJQas_10071352 363
182 3300005406 Ga0070703_10041949 Ga0070703_100419491 363
183 3300005439 Ga0070711_100136829 Ga0070711_1001368292 363
184 3300005445 Ga0070708_100324120 Ga0070708_1003241201 363
185 3300005468 Ga0070707_100051885 Ga0070707_1000518851 363
186 3300005471 Ga0070698_100304127 Ga0070698_1003041272 363
187 3300005518 Ga0070699_100061478 Ga0070699_1000614782 363
188 3300005536 Ga0070697_100244719 Ga0070697_1002447191 363
189 3300005539 Ga0068853_100118251 Ga0068853_1001182511 363
190 3300005983 Ga0081540_1013888 Ga0081540_10138882 363
191 3300005983 Ga0081540_1103428 Ga0081540_11034281 363
192 3300006028 Ga0070717_10191660 Ga0070717_101916602 363
193 3300025885 Ga0207653_10049615 Ga0207653_100496151 363
194 3300025910 Ga0207684_10129239 Ga0207684_101292392 363
195 3300026041 Ga0207639_10090514 Ga0207639_100905143 363
196 3300028023 Ga0265357_1003540 Ga0265357_10035401 363
197 3300031018 Ga0265773_1000064 Ga0265773_10000643 363
198 3300032002 Ga0307416_100424384 Ga0307416_1004243841 363
199 3300039447 Ga0436361_0113510 Ga0436361_0113510_181_1272 363
200 3300045049 Ga0466959_0196457 Ga0466959_0196457_189_1310 363
201 3300045836 Ga0466958_0144764 Ga0466958_0144764_179_1300 363
202 3300045836 Ga0466958_0239448 Ga0466958_0239448_45_1139 363
203 3300047318 Ga0495636_0091317 Ga0495636_0091317_73_1164 363
204 3300049571 Ga0501034_0333808 Ga0501034_0333808_198_1304 363
205 3300049573 Ga0501037_0038700 Ga0501037_0038700_666_1772 363
206 3300049579 Ga0501043_0068400 Ga0501043_0068400_155_1261 363
207 3300049586 Ga0501070_0211185 Ga0501070_0211185_362_1468 363
208 3300049823 Ga0501044_0133557 Ga0501044_0133557_1265_2401 363
209 3300049823 Ga0501044_0366361 Ga0501044_0366361_116_1222 363
210 3300054114 Ga0501084_0322222 Ga0501084_0322222_132_1241 363
211 3300061734 Ga0530510_0270765 Ga0530510_0270765_66_1175 363

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13551

HTH_29

Winged helix-turn helix

46

107

0.96

PF13384

HTH_23

Homeodomain-like domain

40

89

0.95

PF13518

HTH_28

Helix-turn-helix domain

45

98

0.95

PF13358

DDE_3

DDE superfamily endonuclease

183

332

0.92

PF18024

HTH_50

Helix-turn-helix domain

115

149

0.91

PF13565

HTH_32

Homeodomain-like domain

72

143

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1asv-assembly1.cif.gz_A avian sarcoma virus integrase catalytic core domain 0.7451 172 333
6qbv-assembly1.cif.gz_B structure of the htlv-2 integrase catalytic core domain in complex with magnesium (dimeric form) 0.7446 174 333
7krh-assembly1.cif.gz_A-2 crystal structure of the marr family transcriptional regulator from variovorax paradoxus with s28a and r46a mutations 0.7416 94 137
5cz2-assembly2.cif.gz_D crystal structure of a two-domain fragment of mmtv integrase 0.7373 173 330
7ku7-assembly1.cif.gz_F cryo-em structure of rous sarcoma virus cleaved synaptic complex (csc) with hiv-1 integrase strand transfer inhibitor mk-2048. cluster identified by 3-dimensional variability analysis in cryosparc. 0.7361 174 345
ID Description Score Start End Superfamily
af_Q21972_79_144_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8613 25 82 1.10.10.10
af_P19769_115_278_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.8322 175 332 3.30.420.10
af_P16528_22_97_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.812 93 137 1.10.10.10
af_P23758_5_73_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7946 25 86 1.10.10.10
1jmrA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.7941 93 137 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4Z1BZ26-F1-model_v4 IS630 family transposase 0.9799 155 354 GO:0003676
AF-A0A1I3XU07-F1-model_v4 DDE superfamily endonuclease 0.9741 208 338 GO:0003676
GO:0004519
AF-A0A2H1JYL8-F1-model_v4 DDE superfamily endonuclease 0.9669 175 337 GO:0003676
GO:0004519
AF-S6UY58-F1-model_v4 ISPsy25, transposase 0.9666 160 325 GO:0003676
AF-A0A7Z0CYR2-F1-model_v4 deleted 0.9666 215 342

Feature Viewer

pLDDT pTM Quality
85.08 0.6 Medium
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Predicted Structure (AlphaFold2)

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