F321975

General Info

Members Datasets Scaffolds Average Seq Length
211 129 422 258

Family's Representative Sequence

Representative Sequence 3300046559|Ga0495667_0131254|Ga0495667_0131254_697_1599
Length 300
Sequence VEEVGEQQARGPGSDDADLGSHPLSLTDADRGWAPLFRSTETGDDRRMPASREAGVSVTARVLRVLGAFEAARPRLTLTEIARRAGLSAATAHRLVGELVAWGALERDNGAYRIGLRLWEVATLAPRGVGLRAAAMPFLEDLYEATHETVHLAVREGSDALYVERISGRGALPVISRVGGRLPLHATGVGLVLLAYAPAEVQEAILSAPAARFTPKTVTAPRALRRLLAEVRRSRLAVSDGLLDLDALSVAAPLTDARGEVVAALSVVVPASHDYRRYAPAVTAAARGVSRVLRTVGPSA

Samples

Sample ID Description Type Environment
1 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
36 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
80 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
81 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
82 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
83 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
84 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
85 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
86 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
87 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
88 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
89 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
90 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
91 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
92 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
95 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
98 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
99 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
100 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
101 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
102 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
107 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
108 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
109 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
112 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
113 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
114 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
115 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
116 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
117 2558860280 Kutzneria sp. 744 Isolate Unclassified
118 2643221696 Nocardioides sp. Root140 Isolate Unclassified
119 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
120 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
121 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
122 2808606372 Agromyces sp. 23-23 Isolate Unclassified
123 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
124 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
125 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
126 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
127 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
128 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
129 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.94
Metatranscriptomes 0.95
Isolates 7.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.9
Nodule 0
Rhizoplane 0.95
Rhizosphere 86.73
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495667_0131254 3300046559 Bacteria 1616
2 Ga0070658_10058959 3300005327 Bacteria 3126
3 Ga0070676_10154161 3300005328 Bacteria 1473
4 Ga0070683_100014178 3300005329 Bacteria 6964
5 Ga0070683_100018746 3300005329 Bacteria 6134
6 Ga0070683_100019258 3300005329 Bacteria 6062
7 Ga0068869_100002675 3300005334 Bacteria 10774
8 Ga0068869_100005658 3300005334 Bacteria 7878
9 Ga0068869_100203183 3300005334 Bacteria 1563
10 Ga0070680_100332213 3300005336 Bacteria 1291
11 Ga0070680_100613238 3300005336 Bacteria 934
12 Ga0068868_100053320 3300005338 Bacteria 3186
13 Ga0068868_100093797 3300005338 Bacteria 2421
14 Ga0070660_100271502 3300005339 Bacteria 1386
15 Ga0070661_100012085 3300005344 Bacteria 6035
16 Ga0070692_10004431 3300005345 Bacteria 5869
17 Ga0070692_10153553 3300005345 Bacteria 1313
18 Ga0070668_100003505 3300005347 Bacteria 11566
19 Ga0070668_100038725 3300005347 Bacteria 3645
20 Ga0070668_100076531 3300005347 Bacteria 2614
21 Ga0070669_100253607 3300005353 Bacteria 1402
22 Ga0070675_100001135 3300005354 Bacteria 19218
23 Ga0070675_100001935 3300005354 Bacteria 15318
24 Ga0070659_100015081 3300005366 Bacteria 5780
25 Ga0070659_100073625 3300005366 Bacteria 2719
26 Ga0070659_100518122 3300005366 Bacteria 1018
27 Ga0070700_100008815 3300005441 Bacteria 5511
28 Ga0070663_100000658 3300005455 Bacteria 18566
29 Ga0070663_100003858 3300005455 Bacteria 8734
30 Ga0070663_100310335 3300005455 Bacteria 1265
31 Ga0070678_100133359 3300005456 Bacteria 1977
32 Ga0070678_100277602 3300005456 Bacteria 1415
33 Ga0070662_100056523 3300005457 Bacteria 2849
34 Ga0070662_100058520 3300005457 Bacteria 2805
35 Ga0070681_10137311 3300005458 Bacteria 2375
36 Ga0070685_10123298 3300005466 Bacteria 1612
37 Ga0070679_100378420 3300005530 Bacteria 1362
38 Ga0070684_100002368 3300005535 Bacteria 13900
39 Ga0070684_100173049 3300005535 Bacteria 1961
40 Ga0070695_100450230 3300005545 Bacteria 986
41 Ga0070693_100104772 3300005547 Bacteria 1729
42 Ga0070664_100000400 3300005564 Bacteria 32343
43 Ga0070664_100001171 3300005564 Bacteria 20835
44 Ga0070664_100597308 3300005564 Bacteria 1023
45 Ga0068857_100032992 3300005577 Bacteria 4578
46 Ga0068857_100106799 3300005577 Bacteria 2514
47 Ga0068857_100112109 3300005577 Bacteria 2452
48 Ga0068854_100034504 3300005578 Bacteria 3535
49 Ga0068852_100113839 3300005616 Bacteria 2464
50 Ga0068861_100297137 3300005719 Bacteria 1397
51 Ga0068851_10213798 3300005834 Bacteria 1081
52 Ga0068863_100350435 3300005841 Bacteria 1438
53 Ga0068860_100024858 3300005843 Bacteria 5782
54 Ga0068862_100008428 3300005844 Bacteria 8528
55 Ga0068862_100039761 3300005844 Bacteria 3996
56 Ga0081539_10024305 3300005985 Bacteria 3936
57 Ga0081539_10037645 3300005985 Bacteria 2879
58 Ga0081539_10128225 3300005985 Bacteria 1250
59 Ga0075429_100566728 3300006880 Bacteria 995
60 Ga0068865_100062950 3300006881 Bacteria 2606
61 Ga0111539_10002981 3300009094 Bacteria 22454
62 Ga0111539_10044168 3300009094 Bacteria 5339
63 Ga0105245_10071223 3300009098 Bacteria 3157
64 Ga0105245_10133515 3300009098 Bacteria 2330
65 Ga0105243_10065001 3300009148 Bacteria 2929
66 Ga0105238_10135208 3300009551 Bacteria 2443
67 Ga0105239_10315281 3300010375 Bacteria 1763
68 Ga0105239_11075051 3300010375 Bacteria 926
69 Ga0157369_10037658 3300013105 Bacteria 5294
70 Ga0157369_10780139 3300013105 Bacteria 982
71 Ga0157375_10216513 3300013308 Bacteria 2073
72 Ga0157375_10388320 3300013308 Bacteria 1563
73 Ga0163163_10115823 3300014325 Bacteria 2711
74 Ga0157377_10010737 3300014745 Bacteria 4543
75 Ga0157377_10108213 3300014745 Bacteria 1667
76 Ga0206354_11696590 3300020081 Bacteria 2504
77 Ga0206353_11525263 3300020082 Bacteria 8373
78 Ga0207656_10129811 3300025321 Bacteria 1180
79 Ga0207688_10048242 3300025901 Bacteria 2379
80 Ga0207707_10073858 3300025912 Bacteria 2974
81 Ga0207660_10209400 3300025917 Bacteria 1526
82 Ga0207660_10297455 3300025917 Bacteria 1285
83 Ga0207657_10201624 3300025919 Bacteria 1600
84 Ga0207649_10008295 3300025920 Bacteria 5662
85 Ga0207681_10087492 3300025923 Bacteria 2217
86 Ga0207681_10336223 3300025923 Bacteria 1205
87 Ga0207694_10315054 3300025924 Bacteria 1290
88 Ga0207659_10006654 3300025926 Bacteria 7100
89 Ga0207687_10010887 3300025927 Bacteria 5942
90 Ga0207687_10028093 3300025927 Bacteria 3778
91 Ga0207690_10285239 3300025932 Bacteria 1287
92 Ga0207690_10477477 3300025932 Bacteria 1006
93 Ga0207706_10015052 3300025933 Bacteria 7003
94 Ga0207706_10023124 3300025933 Bacteria 5582
95 Ga0207709_10278216 3300025935 Bacteria 1235
96 Ga0207704_10057672 3300025938 Bacteria 2387
97 Ga0207704_10068900 3300025938 Bacteria 2233
98 Ga0207689_10003886 3300025942 Bacteria 13615
99 Ga0207689_10021968 3300025942 Bacteria 5365
100 Ga0207689_10184179 3300025942 Bacteria 1722
101 Ga0207661_10018299 3300025944 Bacteria 5204
102 Ga0207661_10041385 3300025944 Bacteria 3627
103 Ga0207661_10408225 3300025944 Bacteria 1232
104 Ga0207679_10008458 3300025945 Bacteria 6553
105 Ga0207679_10094170 3300025945 Bacteria 2325
106 Ga0207651_10591062 3300025960 Bacteria 969
107 Ga0207668_10002971 3300025972 Bacteria 9942
108 Ga0207668_10003628 3300025972 Bacteria 9066
109 Ga0207668_10194727 3300025972 Bacteria 1609
110 Ga0207668_10249829 3300025972 Bacteria 1440
111 Ga0207677_10015127 3300026023 Bacteria 4528
112 Ga0207677_10191060 3300026023 Bacteria 1620
113 Ga0207703_10128751 3300026035 Bacteria 2183
114 Ga0207678_10000120 3300026067 Bacteria 65114
115 Ga0207678_10005549 3300026067 Bacteria 11271
116 Ga0207708_10009145 3300026075 Bacteria 7332
117 Ga0207708_10041914 3300026075 Bacteria 3490
118 Ga0207641_10168480 3300026088 Bacteria 1997
119 Ga0207641_10341594 3300026088 Bacteria 1425
120 Ga0207674_10027086 3300026116 Bacteria 6072
121 Ga0207674_10047191 3300026116 Bacteria 4417
122 Ga0207674_10415498 3300026116 Bacteria 1300
123 Ga0207675_100355865 3300026118 Bacteria 1435
124 Ga0207683_10058323 3300026121 Bacteria 3389
125 Ga0207698_10824455 3300026142 Bacteria 931
126 Ga0207428_10035259 3300027907 Bacteria 4090
127 Ga0268266_10749967 3300028379 Bacteria 942
128 Ga0268265_10135092 3300028380 Bacteria 2056
129 Ga0268265_10256788 3300028380 Bacteria 1551
130 Ga0268265_10335407 3300028380 Bacteria 1375
131 Ga0307515_10000229 3300028794 Bacteria 139040
132 Ga0307515_10052285 3300028794 Bacteria 6063
133 Ga0307515_10141205 3300028794 Bacteria 2582
134 Ga0307511_10002323 3300030521 Bacteria 19869
135 Ga0307511_10133847 3300030521 Bacteria 1483
136 Ga0307508_10001367 3300031616 Bacteria 27489
137 Ga0307508_10050010 3300031616 Bacteria 3721
138 Ga0307516_10000185 3300031730 Bacteria 80941
139 Ga0307413_10175185 3300031824 Bacteria 1523
140 Ga0307413_10341570 3300031824 Bacteria 1152
141 Ga0307410_10009481 3300031852 Bacteria 5459
142 Ga0307410_10190621 3300031852 Bacteria 1559
143 Ga0307406_10169254 3300031901 Bacteria 1580
144 Ga0307406_10174064 3300031901 Bacteria 1561
145 Ga0307407_10257338 3300031903 Bacteria 1199
146 Ga0307409_100190932 3300031995 Bacteria 1823
147 Ga0307409_100347791 3300031995 Bacteria 1398
148 Ga0307409_100812442 3300031995 Bacteria 943
149 Ga0307409_100816606 3300031995 Bacteria 941
150 Ga0307416_100244417 3300032002 Bacteria 1742
151 Ga0307416_100574934 3300032002 Bacteria 1203
152 Ga0307414_10580182 3300032004 Bacteria 1003
153 Ga0307415_100051355 3300032126 Bacteria 2798
154 Ga0307415_100083360 3300032126 Bacteria 2290
155 Ga0307507_10012807 3300033179 Bacteria 10292
156 Ga0395899_0003241 3300037312 Bacteria 12903
157 Ga0395899_0022013 3300037312 Bacteria 4834
158 Ga0395899_0047167 3300037312 Bacteria 3208
159 Ga0395900_0040474 3300037418 Bacteria 4803
160 Ga0395900_0059686 3300037418 Bacteria 3927
161 Ga0395900_0136286 3300037418 Bacteria 2515
162 Ga0395900_0393999 3300037418 Bacteria 1350
163 Ga0395898_0001261 3300037466 Bacteria 37591
164 Ga0395898_0011735 3300037466 Bacteria 9083
165 Ga0395898_0051699 3300037466 Bacteria 4017
166 Ga0395898_0076357 3300037466 Bacteria 3235
167 Ga0395898_0191754 3300037466 Bacteria 1952
168 Ga0395905_0038897 3300037471 Bacteria 4462
169 Ga0395905_0316959 3300037471 Bacteria 1449
170 Ga0395901_0001197 3300038443 Bacteria 27609
171 Ga0395901_0015992 3300038443 Bacteria 7645
172 Ga0395901_0078060 3300038443 Bacteria 3457
173 Ga0395901_0147027 3300038443 Bacteria 2477
174 Ga0451853_0107381 3300041512 Bacteria 4184
175 Ga0466969_0002932 3300044656 Bacteria 9102
176 Ga0466969_0012574 3300044656 Bacteria 4461
177 Ga0466969_0125880 3300044656 Bacteria 1190
178 Ga0466966_0007649 3300044684 Bacteria 7162
179 Ga0466961_0006398 3300044693 Bacteria 7479
180 Ga0466961_0176135 3300044693 Bacteria 1329
181 Ga0466971_0135053 3300044719 Bacteria 1147
182 Ga0466971_0193835 3300044719 Bacteria 958
183 Ga0466959_0005520 3300045049 Bacteria 8674
184 Ga0466967_0341008 3300045976 Bacteria 1449
185 Ga0495625_0315187 3300046660 Bacteria 997
186 Ga0496109_0463542 3300048912 Bacteria 1197
187 Ga0496114_0036063 3300048917 Bacteria 4087
188 Ga0501072_0127569 3300049588 Bacteria 2027
189 Ga0501076_0571698 3300049592 Bacteria 932
190 Ga0501077_0430797 3300049593 Bacteria 844
191 nmdc:mga08y16_22799_c1 3300050511 Bacteria 6607
192 Ga0500610_0029593 3300053079 Bacteria 2769
193 Ga0495619_0046931 3300053085 Bacteria 2842
194 Ga0500646_0003201 3300053090 Bacteria 4202
195 Ga0500583_0185000 3300053092 Bacteria 1037
196 Ga0500588_0000841 3300053146 Bacteria 5348
197 2523387343 2523231044 Bacteria 6434991
198 2559433105 2558860280 Bacteria 11429938
199 2644536097 2643221696 Bacteria 5431823
200 2729907461 2728369276 Bacteria 5610032
201 2738708698 2738541274 Bacteria 6909446
202 2808829265 2808606357 Bacteria 4466944
203 2808902517 2808606372 Bacteria 4649509
204 2809225587 2808606447 Bacteria 3572005
205 2812324927 2811994872 Bacteria 4121241
206 2816509353 2816332139 Bacteria 9138787
207 2821271474 2821268502 Bacteria 3750023
208 2862514714 2862507626 Bacteria 9425308
209 2862516261 2862507626 Bacteria 9425308
210 2919051899 2919051321 Bacteria 4210889
211 8003320940 8003314358 Bacteria 10575343
212 Ga0495667_0131254
213 Ga0070658_10058959
214 Ga0070676_10154161
215 Ga0070683_100014178
216 Ga0070683_100018746
217 Ga0070683_100019258
218 Ga0068869_100002675
219 Ga0068869_100005658
220 Ga0068869_100203183
221 Ga0070680_100332213
222 Ga0070680_100613238
223 Ga0068868_100053320
224 Ga0068868_100093797
225 Ga0070660_100271502
226 Ga0070661_100012085
227 Ga0070692_10004431
228 Ga0070692_10153553
229 Ga0070668_100003505
230 Ga0070668_100038725
231 Ga0070668_100076531
232 Ga0070669_100253607
233 Ga0070675_100001135
234 Ga0070675_100001935
235 Ga0070659_100015081
236 Ga0070659_100073625
237 Ga0070659_100518122
238 Ga0070700_100008815
239 Ga0070663_100000658
240 Ga0070663_100003858
241 Ga0070663_100310335
242 Ga0070678_100133359
243 Ga0070678_100277602
244 Ga0070662_100056523
245 Ga0070662_100058520
246 Ga0070681_10137311
247 Ga0070685_10123298
248 Ga0070679_100378420
249 Ga0070684_100002368
250 Ga0070684_100173049
251 Ga0070695_100450230
252 Ga0070693_100104772
253 Ga0070664_100000400
254 Ga0070664_100001171
255 Ga0070664_100597308
256 Ga0068857_100032992
257 Ga0068857_100106799
258 Ga0068857_100112109
259 Ga0068854_100034504
260 Ga0068852_100113839
261 Ga0068861_100297137
262 Ga0068851_10213798
263 Ga0068863_100350435
264 Ga0068860_100024858
265 Ga0068862_100008428
266 Ga0068862_100039761
267 Ga0081539_10024305
268 Ga0081539_10037645
269 Ga0081539_10128225
270 Ga0075429_100566728
271 Ga0068865_100062950
272 Ga0111539_10002981
273 Ga0111539_10044168
274 Ga0105245_10071223
275 Ga0105245_10133515
276 Ga0105243_10065001
277 Ga0105238_10135208
278 Ga0105239_10315281
279 Ga0105239_11075051
280 Ga0157369_10037658
281 Ga0157369_10780139
282 Ga0157375_10216513
283 Ga0157375_10388320
284 Ga0163163_10115823
285 Ga0157377_10010737
286 Ga0157377_10108213
287 Ga0206354_11696590
288 Ga0206353_11525263
289 Ga0207656_10129811
290 Ga0207688_10048242
291 Ga0207707_10073858
292 Ga0207660_10209400
293 Ga0207660_10297455
294 Ga0207657_10201624
295 Ga0207649_10008295
296 Ga0207681_10087492
297 Ga0207681_10336223
298 Ga0207694_10315054
299 Ga0207659_10006654
300 Ga0207687_10010887
301 Ga0207687_10028093
302 Ga0207690_10285239
303 Ga0207690_10477477
304 Ga0207706_10015052
305 Ga0207706_10023124
306 Ga0207709_10278216
307 Ga0207704_10057672
308 Ga0207704_10068900
309 Ga0207689_10003886
310 Ga0207689_10021968
311 Ga0207689_10184179
312 Ga0207661_10018299
313 Ga0207661_10041385
314 Ga0207661_10408225
315 Ga0207679_10008458
316 Ga0207679_10094170
317 Ga0207651_10591062
318 Ga0207668_10002971
319 Ga0207668_10003628
320 Ga0207668_10194727
321 Ga0207668_10249829
322 Ga0207677_10015127
323 Ga0207677_10191060
324 Ga0207703_10128751
325 Ga0207678_10000120
326 Ga0207678_10005549
327 Ga0207708_10009145
328 Ga0207708_10041914
329 Ga0207641_10168480
330 Ga0207641_10341594
331 Ga0207674_10027086
332 Ga0207674_10047191
333 Ga0207674_10415498
334 Ga0207675_100355865
335 Ga0207683_10058323
336 Ga0207698_10824455
337 Ga0207428_10035259
338 Ga0268266_10749967
339 Ga0268265_10135092
340 Ga0268265_10256788
341 Ga0268265_10335407
342 Ga0307515_10000229
343 Ga0307515_10052285
344 Ga0307515_10141205
345 Ga0307511_10002323
346 Ga0307511_10133847
347 Ga0307508_10001367
348 Ga0307508_10050010
349 Ga0307516_10000185
350 Ga0307413_10175185
351 Ga0307413_10341570
352 Ga0307410_10009481
353 Ga0307410_10190621
354 Ga0307406_10169254
355 Ga0307406_10174064
356 Ga0307407_10257338
357 Ga0307409_100190932
358 Ga0307409_100347791
359 Ga0307409_100812442
360 Ga0307409_100816606
361 Ga0307416_100244417
362 Ga0307416_100574934
363 Ga0307414_10580182
364 Ga0307415_100051355
365 Ga0307415_100083360
366 Ga0307507_10012807
367 Ga0395899_0003241
368 Ga0395899_0022013
369 Ga0395899_0047167
370 Ga0395900_0040474
371 Ga0395900_0059686
372 Ga0395900_0136286
373 Ga0395900_0393999
374 Ga0395898_0001261
375 Ga0395898_0011735
376 Ga0395898_0051699
377 Ga0395898_0076357
378 Ga0395898_0191754
379 Ga0395905_0038897
380 Ga0395905_0316959
381 Ga0395901_0001197
382 Ga0395901_0015992
383 Ga0395901_0078060
384 Ga0395901_0147027
385 Ga0451853_0107381
386 Ga0466969_0002932
387 Ga0466969_0012574
388 Ga0466969_0125880
389 Ga0466966_0007649
390 Ga0466961_0006398
391 Ga0466961_0176135
392 Ga0466971_0135053
393 Ga0466971_0193835
394 Ga0466959_0005520
395 Ga0466967_0341008
396 Ga0495625_0315187
397 Ga0496109_0463542
398 Ga0496114_0036063
399 Ga0501072_0127569
400 Ga0501076_0571698
401 Ga0501077_0430797
402 nmdc:mga08y16_22799_c1
403 Ga0500610_0029593
404 Ga0495619_0046931
405 Ga0500646_0003201
406 Ga0500583_0185000
407 Ga0500588_0000841
408 2523387343
409 2559433105
410 2644536097
411 2729907461
412 2738708698
413 2808829265
414 2808902517
415 2809225587
416 2812324927
417 2816509353
418 2821271474
419 2862514714
420 2862516261
421 2919051899
422 8003320940

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09339

HTH_IclR

IclR helix-turn-helix domain

58

109

0.97

PF01614

IclR

Bacterial transcriptional regulator

125

292

0.94

PF12802

MarR_2

MarR family

55

111

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ysq-assembly1.cif.gz_A the crystal structure of transcriptional regulator yaij 0.9269 83 247
1ysp-assembly1.cif.gz_A crystal structure of the c-terminal domain of e. coli transcriptional regulator kdgr. 0.9092 82 247
3bjn-assembly1.cif.gz_A crystal structure of c-terminal domain of putative transcriptional regulator from vibrio cholerae, targeted domain 79-240 0.8936 85 242
1ysp-assembly1.cif.gz_A crystal structure of the c-terminal domain of e. coli transcriptional regulator kdgr. 0.8883 82 247
5hpi-assembly1.cif.gz_A crystal structure of the double mutant of pobr transcription factor inducer binding domain-3-hydroxy benzoic acid complex from acinetobacter 0.8821 85 244
ID Description Score Start End Superfamily
1mkmA03 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.931 83 247 3.30.450.40
af_P77300_77_251_3.30.450.40 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9278 83 247 3.30.450.40
1ysqA00 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9269 83 247 3.30.450.40
af_P0ACN4_17_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.915 12 76 1.10.10.10
2ia2B02 Alpha Beta;2-Layer Sandwich;Beta-Lactamase;GAF domain 0.9126 83 247 3.30.450.40
ID Description Score Start End GO Terms
AF-A0A1H5KGL4-F1-model_v4 Transcriptional regulator 0.9547 83 247 GO:0003677
GO:0003700
GO:0045892
AF-A0A371MC48-F1-model_v4 IclR family transcriptional regulator 0.9434 80 247 GO:0003677
GO:0003700
GO:0045892
AF-H2K4J8-F1-model_v4 deleted 0.9412 83 246
AF-A0A2V9QTZ5-F1-model_v4 IclR-ED domain-containing protein 0.9372 83 248 GO:0003677
GO:0003700
GO:0045892
AF-A0A4S0JEV1-F1-model_v4 IclR family transcriptional regulator 0.9332 131 221 GO:0003677
GO:0003700
GO:0045892

Map