F321399

General Info

Members Datasets Scaffolds Average Seq Length
211 142 422 113

Family's Representative Sequence

Representative Sequence 3300005564|Ga0070664_100029963|Ga0070664_1000299634
Length 132
Sequence MSRYIHTKRHGTAPAFILRGMDPAEARDLLARERARIEAALIDAGKPEGDDEAAVYDSGDVAPELLETEIDVGVQASLREELAAIERAEGRLAEGTYGLSVESGEPIPDGRLQAVPWAERTAEEQARLESGR

Samples

Sample ID Description Type Environment
1 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
46 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
47 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
50 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
73 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
74 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
77 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
78 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
79 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
80 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
83 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
84 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
85 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
86 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
87 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
88 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
89 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
92 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
93 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
94 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
95 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
96 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
97 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
98 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
117 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
118 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
119 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
120 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
124 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
125 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
126 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
127 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
128 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
129 3300049762 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
133 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
134 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
135 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
136 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
137 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
138 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
139 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
140 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
141 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
142 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.58
Metatranscriptomes 1.42
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.84
Nodule 0
Rhizoplane 12.32
Rhizosphere 84.83
Stem 0
Stem Tuber 0
Unclassified 10.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070664_100029963 3300005564 Bacteria 4538
2 JGI25407J50210_10000118 3300003373 Bacteria 11408
3 JGI25407J50210_10001362 3300003373 Bacteria 5528
4 Ga0070658_10403427 3300005327 Bacteria 1174
5 Ga0070676_10588341 3300005328 Bacteria 801
6 Ga0070683_100377014 3300005329 Bacteria 1352
7 Ga0070682_100514637 3300005337 Bacteria 930
8 Ga0068868_101494429 3300005338 Bacteria 632
9 Ga0070660_100813554 3300005339 Bacteria 786
10 Ga0070660_101641488 3300005339 Bacteria 547
11 Ga0070709_10733338 3300005434 Bacteria 771
12 Ga0070714_100578323 3300005435 Unclassified 1077
13 Ga0070710_10694459 3300005437 Bacteria 717
14 Ga0070711_100540229 3300005439 Bacteria 966
15 Ga0070694_101158223 3300005444 Bacteria 647
16 Ga0070708_100620708 3300005445 Bacteria 1019
17 Ga0070699_101225789 3300005518 Bacteria 688
18 Ga0070679_100108637 3300005530 Bacteria 2760
19 Ga0070679_100476850 3300005530 Unclassified 1192
20 Ga0070684_100076330 3300005535 Bacteria 2958
21 Ga0070704_101269250 3300005549 Bacteria 673
22 Ga0068856_100162151 3300005614 Bacteria 2246
23 Ga0068856_100394735 3300005614 Bacteria 1403
24 Ga0070702_101360773 3300005615 Bacteria 579
25 Ga0068861_100202867 3300005719 Bacteria 1666
26 Ga0068861_100970866 3300005719 Bacteria 809
27 Ga0081538_10000650 3300005981 Bacteria 38474
28 Ga0081538_10001437 3300005981 Bacteria 24494
29 Ga0081538_10001558 3300005981 Bacteria 23495
30 Ga0081538_10003534 3300005981 Bacteria 14703
31 Ga0081538_10021775 3300005981 Bacteria 4665
32 Ga0081538_10024048 3300005981 Bacteria 4353
33 Ga0081538_10046658 3300005981 Unclassified 2668
34 Ga0070717_10068644 3300006028 Bacteria 2951
35 Ga0075365_10002884 3300006038 Bacteria 8657
36 Ga0075364_10014848 3300006051 Bacteria 4820
37 Ga0070712_100108659 3300006175 Bacteria 2065
38 Ga0070712_100390770 3300006175 Bacteria 1147
39 Ga0070712_100626999 3300006175 Bacteria 912
40 Ga0070712_100717416 3300006175 Bacteria 854
41 Ga0075367_10294129 3300006178 Bacteria 1022
42 Ga0075428_100538604 3300006844 Bacteria 1248
43 Ga0075428_102061764 3300006844 Bacteria 590
44 Ga0075428_102507503 3300006844 Bacteria 528
45 Ga0075431_100497934 3300006847 Bacteria 1210
46 Ga0075433_10053461 3300006852 Bacteria 3522
47 Ga0075433_10893377 3300006852 Bacteria 775
48 Ga0075434_100005767 3300006871 Bacteria 11310
49 Ga0075429_100628357 3300006880 Bacteria 941
50 Ga0105240_10045752 3300009093 Bacteria 5550
51 Ga0105240_11061681 3300009093 Bacteria 863
52 Ga0111539_12875653 3300009094 Bacteria 557
53 Ga0105245_10415377 3300009098 Bacteria 1347
54 Ga0105245_11619879 3300009098 Bacteria 699
55 Ga0105247_11712292 3300009101 Bacteria 520
56 Ga0114129_10038225 3300009147 Bacteria 6772
57 Ga0114129_10618000 3300009147 Bacteria 1402
58 Ga0114129_11859719 3300009147 Bacteria 731
59 Ga0105243_10156983 3300009148 Bacteria 1957
60 Ga0105242_10171574 3300009176 Bacteria 1907
61 Ga0105237_10016934 3300009545 Bacteria 7562
62 Ga0157370_10057944 3300013104 Bacteria 3682
63 Ga0157369_12515273 3300013105 Unclassified 521
64 Ga0157372_10169383 3300013307 Bacteria 2527
65 Ga0157372_10747693 3300013307 Bacteria 1137
66 Ga0157375_11614627 3300013308 Bacteria 767
67 Ga0157380_11087578 3300014326 Bacteria 838
68 Ga0182008_10423601 3300014497 Bacteria 719
69 Ga0197907_10870148 3300020069 Bacteria 853
70 Ga0206356_10002524 3300020070 Bacteria 949
71 Ga0206353_11973577 3300020082 Bacteria 1392
72 Ga0207699_10866651 3300025906 Bacteria 665
73 Ga0207645_11032411 3300025907 Bacteria 556
74 Ga0207707_11215329 3300025912 Bacteria 609
75 Ga0207695_10336804 3300025913 Bacteria 1397
76 Ga0207695_10689728 3300025913 Bacteria 902
77 Ga0207671_10011039 3300025914 Bacteria 7394
78 Ga0207693_10025196 3300025915 Bacteria 4716
79 Ga0207693_10353073 3300025915 Bacteria 1150
80 Ga0207693_10469533 3300025915 Bacteria 983
81 Ga0207693_11066450 3300025915 Bacteria 615
82 Ga0207663_10083226 3300025916 Bacteria 2101
83 Ga0207660_10240575 3300025917 Bacteria 1426
84 Ga0207657_10322327 3300025919 Bacteria 1221
85 Ga0207652_10032144 3300025921 Bacteria 4408
86 Ga0207687_10164242 3300025927 Bacteria 1707
87 Ga0207664_10522510 3300025929 Unclassified 1064
88 Ga0207664_11049859 3300025929 Unclassified 729
89 Ga0207686_10763013 3300025934 Bacteria 773
90 Ga0207709_10319372 3300025935 Bacteria 1162
91 Ga0207704_11874006 3300025938 Unclassified 516
92 Ga0207679_10043542 3300025945 Bacteria 3233
93 Ga0207677_11849368 3300026023 Bacteria 561
94 Ga0207703_11531805 3300026035 Bacteria 641
95 Ga0207702_10674695 3300026078 Bacteria 1017
96 Ga0207641_10991812 3300026088 Unclassified 836
97 Ga0207675_100416406 3300026118 Bacteria 1326
98 Ga0207698_10586033 3300026142 Bacteria 1098
99 Ga0307406_10753594 3300031901 Unclassified 818
100 Ga0307409_100277193 3300031995 Bacteria 1548
101 Ga0395898_1124477 3300037466 Bacteria 718
102 Ga0395901_0398644 3300038443 Bacteria 1414
103 Ga0395901_0593865 3300038443 Bacteria 1117
104 Ga0395901_1525950 3300038443 Bacteria 623
105 Ga0395901_1939695 3300038443 Unclassified 536
106 Ga0466969_0141243 3300044656 Bacteria 1113
107 Ga0466966_0077723 3300044684 Bacteria 2071
108 Ga0466966_0698629 3300044684 Bacteria 611
109 Ga0466961_0200679 3300044693 Bacteria 1234
110 Ga0466961_0306021 3300044693 Bacteria 970
111 Ga0466968_0727931 3300044735 Unclassified 508
112 Ga0466959_0013142 3300045049 Bacteria 5997
113 Ga0466959_0452704 3300045049 Bacteria 870
114 Ga0466959_0833798 3300045049 Bacteria 616
115 Ga0466967_0753502 3300045976 Bacteria 966
116 Ga0495641_0233766 3300046461 Bacteria 825
117 Ga0495582_0526257 3300046473 Bacteria 684
118 Ga0495596_0285247 3300046500 Bacteria 642
119 Ga0495616_0427458 3300046513 Bacteria 540
120 Ga0495658_0410436 3300046683 Bacteria 864
121 Ga0495615_0257531 3300048090 Bacteria 555
122 Ga0496100_0023617 3300048903 Bacteria 3738
123 Ga0496100_1116255 3300048903 Bacteria 621
124 Ga0496101_1276324 3300048904 Archaea 575
125 Ga0496102_0155743 3300048905 Bacteria 2148
126 Ga0496102_0336905 3300048905 Bacteria 1421
127 Ga0496102_0746628 3300048905 Bacteria 901
128 Ga0496104_0450286 3300048907 Bacteria 1199
129 Ga0496105_0182956 3300048908 Unclassified 1716
130 Ga0496106_0737623 3300048909 Bacteria 784
131 Ga0496106_1073693 3300048909 Bacteria 631
132 Ga0496107_0211268 3300048910 Unclassified 1443
133 Ga0496107_0968593 3300048910 Bacteria 618
134 Ga0496108_1669496 3300048911 Bacteria 525
135 Ga0496109_0985523 3300048912 Bacteria 781
136 Ga0496110_0344911 3300048913 Bacteria 1357
137 Ga0496110_0388278 3300048913 Bacteria 1272
138 Ga0496111_0152807 3300048914 Bacteria 1712
139 Ga0496112_0102031 3300048915 Bacteria 2839
140 Ga0496112_0111393 3300048915 Bacteria 2707
141 Ga0496112_0808435 3300048915 Bacteria 862
142 Ga0496113_1285801 3300048916 Bacteria 569
143 Ga0496114_1234404 3300048917 Bacteria 634
144 Ga0496114_1608548 3300048917 Unclassified 538
145 Ga0496115_0000075 3300048918 Bacteria 90155
146 Ga0496115_0000319 3300048918 Bacteria 40949
147 Ga0496115_0053520 3300048918 Unclassified 3239
148 Ga0501031_0162534 3300049568 Bacteria 1459
149 Ga0501033_0002975 3300049570 Bacteria 14155
150 Ga0501036_0005249 3300049572 Bacteria 10482
151 Ga0501036_0218685 3300049572 Bacteria 1600
152 Ga0501037_0002584 3300049573 Bacteria 13081
153 Ga0501038_0002627 3300049574 Bacteria 16799
154 Ga0501039_0048653 3300049575 Bacteria 3277
155 Ga0501040_0160826 3300049576 Bacteria 1587
156 Ga0501040_0549005 3300049576 Bacteria 834
157 Ga0501041_0003151 3300049577 Bacteria 9487
158 Ga0501041_0247789 3300049577 Unclassified 1120
159 Ga0501042_0009006 3300049578 Bacteria 6631
160 Ga0501042_0165632 3300049578 Bacteria 1595
161 Ga0501043_0013654 3300049579 Bacteria 6356
162 Ga0501046_0002432 3300049580 Bacteria 17444
163 Ga0501047_0935960 3300049581 Unclassified 680
164 Ga0501048_0007681 3300049582 Bacteria 8174
165 Ga0501048_0269149 3300049582 Bacteria 1211
166 Ga0501068_0004327 3300049584 Bacteria 7716
167 Ga0501069_0002269 3300049585 Bacteria 9715
168 Ga0501070_0003130 3300049586 Bacteria 14405
169 Ga0501071_0120466 3300049587 Bacteria 1945
170 Ga0501072_0012379 3300049588 Bacteria 6517
171 Ga0501072_0459816 3300049588 Bacteria 1008
172 Ga0501073_0001761 3300049589 Bacteria 16090
173 Ga0501074_0018125 3300049590 Bacteria 5113
174 Ga0501074_0870493 3300049590 Bacteria 634
175 Ga0501076_0104538 3300049592 Bacteria 2285
176 Ga0501076_0159269 3300049592 Bacteria 1838
177 Ga0501076_0740800 3300049592 Unclassified 811
178 Ga0501076_0940856 3300049592 Bacteria 712
179 Ga0501077_0153834 3300049593 Bacteria 1459
180 Ga0501077_0370408 3300049593 Bacteria 915
181 Ga0501077_0463357 3300049593 Unclassified 812
182 Ga0501079_0010649 3300049741 Bacteria 7000
183 Ga0501079_0240263 3300049741 Bacteria 1415
184 Ga0501079_1564452 3300049741 Unclassified 519
185 Ga0501080_0142287 3300049742 Bacteria 2217
186 Ga0501081_0003250 3300049743 Bacteria 10345
187 Ga0501081_0502108 3300049743 Unclassified 904
188 Ga0501083_0055346 3300049744 Bacteria 2660
189 Ga0501265_085917 3300049762 Unclassified 555
190 Ga0501035_0005232 3300049822 Bacteria 12286
191 Ga0501044_0047108 3300049823 Bacteria 4460
192 Ga0501045_0165825 3300049824 Bacteria 1645
193 nmdc:mga00v17_5808_c1 3300050491 Bacteria 5857
194 nmdc:mga0yw44_1156_c1 3300050492 Bacteria 10234
195 nmdc:mga06z11_416003_c1 3300050494 Bacteria 810
196 nmdc:mga05p37_115523_c1 3300050507 Bacteria 3299
197 nmdc:mga05p37_11638_c1 3300050507 Bacteria 10486
198 nmdc:mga05p37_1246712_c1 3300050507 Bacteria 763
199 nmdc:mga05p37_1302494_c1 3300050507 Bacteria 740
200 nmdc:mga0a205_11248_c1 3300050515 Bacteria 8235
201 nmdc:mga0a205_700992_c1 3300050515 Bacteria 862
202 Ga0495655_0026666 3300053083 Bacteria 1363
203 Ga0495619_0184192 3300053085 Bacteria 1445
204 Ga0501084_0019623 3300054114 Bacteria 5632
205 Ga0501084_1095608 3300054114 Bacteria 669
206 Ga0501084_1215058 3300054114 Bacteria 632
207 Ga0501082_0143330 3300060353 Bacteria 2073
208 Ga0501082_0411391 3300060353 Bacteria 1181
209 Ga0530510_0011418 3300061734 Bacteria 6232
210 Ga0530510_0091223 3300061734 Bacteria 2223
211 Ga0530510_1188404 3300061734 Bacteria 585
212 Ga0070664_100029963
213 JGI25407J50210_10000118
214 JGI25407J50210_10001362
215 Ga0070658_10403427
216 Ga0070676_10588341
217 Ga0070683_100377014
218 Ga0070682_100514637
219 Ga0068868_101494429
220 Ga0070660_100813554
221 Ga0070660_101641488
222 Ga0070709_10733338
223 Ga0070714_100578323
224 Ga0070710_10694459
225 Ga0070711_100540229
226 Ga0070694_101158223
227 Ga0070708_100620708
228 Ga0070699_101225789
229 Ga0070679_100108637
230 Ga0070679_100476850
231 Ga0070684_100076330
232 Ga0070704_101269250
233 Ga0068856_100162151
234 Ga0068856_100394735
235 Ga0070702_101360773
236 Ga0068861_100202867
237 Ga0068861_100970866
238 Ga0081538_10000650
239 Ga0081538_10001437
240 Ga0081538_10001558
241 Ga0081538_10003534
242 Ga0081538_10021775
243 Ga0081538_10024048
244 Ga0081538_10046658
245 Ga0070717_10068644
246 Ga0075365_10002884
247 Ga0075364_10014848
248 Ga0070712_100108659
249 Ga0070712_100390770
250 Ga0070712_100626999
251 Ga0070712_100717416
252 Ga0075367_10294129
253 Ga0075428_100538604
254 Ga0075428_102061764
255 Ga0075428_102507503
256 Ga0075431_100497934
257 Ga0075433_10053461
258 Ga0075433_10893377
259 Ga0075434_100005767
260 Ga0075429_100628357
261 Ga0105240_10045752
262 Ga0105240_11061681
263 Ga0111539_12875653
264 Ga0105245_10415377
265 Ga0105245_11619879
266 Ga0105247_11712292
267 Ga0114129_10038225
268 Ga0114129_10618000
269 Ga0114129_11859719
270 Ga0105243_10156983
271 Ga0105242_10171574
272 Ga0105237_10016934
273 Ga0157370_10057944
274 Ga0157369_12515273
275 Ga0157372_10169383
276 Ga0157372_10747693
277 Ga0157375_11614627
278 Ga0157380_11087578
279 Ga0182008_10423601
280 Ga0197907_10870148
281 Ga0206356_10002524
282 Ga0206353_11973577
283 Ga0207699_10866651
284 Ga0207645_11032411
285 Ga0207707_11215329
286 Ga0207695_10336804
287 Ga0207695_10689728
288 Ga0207671_10011039
289 Ga0207693_10025196
290 Ga0207693_10353073
291 Ga0207693_10469533
292 Ga0207693_11066450
293 Ga0207663_10083226
294 Ga0207660_10240575
295 Ga0207657_10322327
296 Ga0207652_10032144
297 Ga0207687_10164242
298 Ga0207664_10522510
299 Ga0207664_11049859
300 Ga0207686_10763013
301 Ga0207709_10319372
302 Ga0207704_11874006
303 Ga0207679_10043542
304 Ga0207677_11849368
305 Ga0207703_11531805
306 Ga0207702_10674695
307 Ga0207641_10991812
308 Ga0207675_100416406
309 Ga0207698_10586033
310 Ga0307406_10753594
311 Ga0307409_100277193
312 Ga0395898_1124477
313 Ga0395901_0398644
314 Ga0395901_0593865
315 Ga0395901_1525950
316 Ga0395901_1939695
317 Ga0466969_0141243
318 Ga0466966_0077723
319 Ga0466966_0698629
320 Ga0466961_0200679
321 Ga0466961_0306021
322 Ga0466968_0727931
323 Ga0466959_0013142
324 Ga0466959_0452704
325 Ga0466959_0833798
326 Ga0466967_0753502
327 Ga0495641_0233766
328 Ga0495582_0526257
329 Ga0495596_0285247
330 Ga0495616_0427458
331 Ga0495658_0410436
332 Ga0495615_0257531
333 Ga0496100_0023617
334 Ga0496100_1116255
335 Ga0496101_1276324
336 Ga0496102_0155743
337 Ga0496102_0336905
338 Ga0496102_0746628
339 Ga0496104_0450286
340 Ga0496105_0182956
341 Ga0496106_0737623
342 Ga0496106_1073693
343 Ga0496107_0211268
344 Ga0496107_0968593
345 Ga0496108_1669496
346 Ga0496109_0985523
347 Ga0496110_0344911
348 Ga0496110_0388278
349 Ga0496111_0152807
350 Ga0496112_0102031
351 Ga0496112_0111393
352 Ga0496112_0808435
353 Ga0496113_1285801
354 Ga0496114_1234404
355 Ga0496114_1608548
356 Ga0496115_0000075
357 Ga0496115_0000319
358 Ga0496115_0053520
359 Ga0501031_0162534
360 Ga0501033_0002975
361 Ga0501036_0005249
362 Ga0501036_0218685
363 Ga0501037_0002584
364 Ga0501038_0002627
365 Ga0501039_0048653
366 Ga0501040_0160826
367 Ga0501040_0549005
368 Ga0501041_0003151
369 Ga0501041_0247789
370 Ga0501042_0009006
371 Ga0501042_0165632
372 Ga0501043_0013654
373 Ga0501046_0002432
374 Ga0501047_0935960
375 Ga0501048_0007681
376 Ga0501048_0269149
377 Ga0501068_0004327
378 Ga0501069_0002269
379 Ga0501070_0003130
380 Ga0501071_0120466
381 Ga0501072_0012379
382 Ga0501072_0459816
383 Ga0501073_0001761
384 Ga0501074_0018125
385 Ga0501074_0870493
386 Ga0501076_0104538
387 Ga0501076_0159269
388 Ga0501076_0740800
389 Ga0501076_0940856
390 Ga0501077_0153834
391 Ga0501077_0370408
392 Ga0501077_0463357
393 Ga0501079_0010649
394 Ga0501079_0240263
395 Ga0501079_1564452
396 Ga0501080_0142287
397 Ga0501081_0003250
398 Ga0501081_0502108
399 Ga0501083_0055346
400 Ga0501265_085917
401 Ga0501035_0005232
402 Ga0501044_0047108
403 Ga0501045_0165825
404 nmdc:mga00v17_5808_c1
405 nmdc:mga0yw44_1156_c1
406 nmdc:mga06z11_416003_c1
407 nmdc:mga05p37_115523_c1
408 nmdc:mga05p37_11638_c1
409 nmdc:mga05p37_1246712_c1
410 nmdc:mga05p37_1302494_c1
411 nmdc:mga0a205_11248_c1
412 nmdc:mga0a205_700992_c1
413 Ga0495655_0026666
414 Ga0495619_0184192
415 Ga0501084_0019623
416 Ga0501084_1095608
417 Ga0501084_1215058
418 Ga0501082_0143330
419 Ga0501082_0411391
420 Ga0530510_0011418
421 Ga0530510_0091223
422 Ga0530510_1188404

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01258

zf-dskA_traR

Prokaryotic dksA/traR C4-type zinc finger

95

130

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6tms-assembly2.cif.gz_I crystal structure of a de novo designed hexameric helical-bundle protein 0.7743 4 68
1tjl-assembly1.cif.gz_A crystal structure of transcription factor dksa from e. coli 0.7611 1 103
5f7t-assembly4.cif.gz_L trim5 b-box2 and coiled-coil chimera 0.7511 3 66
4ijj-assembly3.cif.gz_C structure of transcription factor dksa2 from pseudomonas aeruginosa 0.7449 1 104
1tjl-assembly1.cif.gz_A crystal structure of transcription factor dksa from e. coli 0.7369 1 103
ID Description Score Start End Superfamily
3cyoA00 Mainly Alpha;Orthogonal Bundle;Helix Hairpins; 0.7493 3 67 1.10.287.210
1tjlB00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);DksA, coiled-coil domain 0.7399 1 103 1.20.120.910
4ijjA00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);DksA, coiled-coil domain 0.7175 3 104 1.20.120.910
1tjlB00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);DksA, coiled-coil domain 0.7167 1 103 1.20.120.910
4ijjA00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);DksA, coiled-coil domain 0.6874 3 104 1.20.120.910
ID Description Score Start End GO Terms
AF-A0A538C1Z0-F1-model_v4 TraR/DksA family transcriptional regulator 0.9068 1 104
AF-A0A349QIL0-F1-model_v4 deleted 0.8896 1 97
AF-A0A538ADX7-F1-model_v4 Uncharacterized protein 0.8865 1 103
AF-A0A359M2U8-F1-model_v4 Zinc finger DksA/TraR C4-type domain-containing protein 0.8863 34 102 GO:0008270
AF-A0A538C1Z0-F1-model_v4 TraR/DksA family transcriptional regulator 0.8825 1 104

Map