F320949
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 210 | 138 | 179 | 384 |
Family's Representative Sequence
| Representative Sequence | 3300053125|Ga0500618_003181|Ga0500618_003181_1556_2860 |
| Length | 434 |
| Sequence | VNSAAGSDLQRAEYDLNVLAPNGLRRGRSTGSCATAAVRAALYLLLGGMRVEQTEVSLPDGLHFLLVPIQGVEAVGDGTVRAEVLKDGGDDPDNTHGATIFVELRPNEIGQLRFFAAQGVGIATLPGLRVAVGEPAINPVPRKMMRQAVSEVLLELLPLQKDADGAAQMAWLEQGFDIAVGCRDGEIIAKKTFNPRLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALADCREAQEGVAYLPGKIGRTFVSSVLGLPDKRSVQIANFLGDALDFTQQALQEQARRLPVLWLAGHPGKLAKVLDGSWDTHSGKSNMAMGGVAEVAAALRDAAGQALFDAATLDAMRAANTVEAIIDQVRAESAERSRALWLEIEQRIAALAQQRLPNVDRVEVRLFDLDGALLGAGSAAAMKLNAXXXXEDAAGTNEEDVE |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2511231003 | Herbaspirillum sp. CF444 | Isolate | Rhizosphere |
| 2 | 2511231026 | Herbaspirillum sp. YR522 | Isolate | Rhizosphere |
| 3 | 2521172590 | Herbaspirillum sp. GW103 | Isolate | Rhizosphere |
| 4 | 2547132103 | Chromobacterium sp. C-61 | Isolate | Rhizosphere |
| 5 | 2548876994 | Herbaspirillum lusitanum P6-12 | Isolate | Nodule |
| 6 | 2551306416 | Herbaspirillum seropedicae Os34 | Isolate | Unclassified |
| 7 | 2765235838 | Herbaspirillum robiniae AA6 | Isolate | Unclassified |
| 8 | 2818991445 | Herbaspirillum hiltneri 3195 | Isolate | Unclassified |
| 9 | 2818991449 | Herbaspirillum huttiense 1147 | Isolate | Unclassified |
| 10 | 2839094727 | Herbaspirillum robiniae HZ10 | Isolate | Nodule |
| 11 | 2843690924 | Chromobacterium rhizoryzae JP2-74 | Isolate | Rhizosphere |
| 12 | 2846033681 | Chromobacterium sinusclupearum MWU13-2610 | Isolate | Rhizosphere |
| 13 | 2846037992 | Chromobacterium alticapitis MWU14-2602 | Isolate | Rhizosphere |
| 14 | 2857553236 | Duganella sp. R-74557 | Isolate | Unclassified |
| 15 | 2884811622 | Herbaspirillum sp. 3C11 | Isolate | Unclassified |
| 16 | 2884836552 | Herbaspirillum sp. 3R-11 | Isolate | Unclassified |
| 17 | 2884852848 | Herbaspirillum sp. 3R11 | Isolate | Unclassified |
| 18 | 2885266251 | Ralstonia sp. SET104 | Isolate | Nodule |
| 19 | 2896154374 | Herbaspirillum sp. 3R-3a1 | Isolate | Nodule |
| 20 | 2904424332 | Duganella sp. 1411 | Isolate | Rhizosphere |
| 21 | 2904439833 | Herbaspirillum sp. 1589 | Isolate | Rhizosphere |
| 22 | 2904530477 | Herbaspirillum huttiense 611 | Isolate | Unclassified |
| 23 | 2904584206 | Herbaspirillum sp. 1050 | Isolate | Unclassified |
| 24 | 2904589729 | Herbaspirillum sp. 1130 | Isolate | Unclassified |
| 25 | 2904601388 | Herbaspirillum sp. 1273 | Isolate | Rhizosphere |
| 26 | 2919046199 | Herbaspirillum frisingense 596 | Isolate | Unclassified |
| 27 | 2919079590 | Herbaspirillum sp. 1173 | Isolate | Unclassified |
| 28 | 2919476304 | Duganella sp. 3397 | Isolate | Unclassified |
| 29 | 2923510766 | Herbaspirillum rubrisubalbicans SLBN-127 | Isolate | Rhizosphere |
| 30 | 2928130867 | Herbaspirillum seropedicae 1977 | Isolate | Unclassified |
| 31 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 32 | 3300002704 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB | Metagenome | Unclassified |
| 33 | 3300002705 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS | Metagenome | Unclassified |
| 34 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 35 | 3300002741 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL | Metagenome | Unclassified |
| 36 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 37 | 3300003575 | Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Rhizosphere |
| 38 | 3300003751 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 | Metagenome | Endosphere |
| 39 | 3300003752 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 | Metagenome | Endosphere |
| 40 | 3300003756 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 | Metagenome | Endosphere |
| 41 | 3300003758 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 | Metagenome | Endosphere |
| 42 | 3300003759 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 | Metagenome | Endosphere |
| 43 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 44 | 3300003841 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 45 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 46 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 47 | 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Metagenome | Rhizosphere |
| 48 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 49 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 50 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 51 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 52 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 53 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 54 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 55 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 56 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 57 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 58 | 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Metagenome | Rhizosphere |
| 59 | 3300006946 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG | Metagenome | Nodule |
| 60 | 3300009036 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG | Metagenome | Rhizosphere |
| 61 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 62 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 63 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 64 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 65 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 66 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 67 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 68 | 3300014497 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG | Metagenome | Rhizosphere |
| 69 | 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Metagenome | Rhizosphere |
| 70 | 3300015262 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG | Metagenome | Rhizosphere |
| 71 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 72 | 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Metagenome | Rhizosphere |
| 73 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 74 | 3300025206 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) | Metagenome | Unclassified |
| 75 | 3300025224 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 76 | 3300025225 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 77 | 3300025226 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 78 | 3300025229 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 79 | 3300025230 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 80 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 81 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 82 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 83 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 84 | 3300025253 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 85 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 86 | 3300025256 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) | Metagenome | Unclassified |
| 87 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 92 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 96 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 97 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 98 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 99 | 3300027111 | Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) | Metagenome | Nodule |
| 100 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 101 | 3300030521 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM | Metagenome | Unclassified |
| 102 | 3300030744 | Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 | Metagenome | Rhizosphere |
| 103 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 104 | 3300031838 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM | Metagenome | Unclassified |
| 105 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 106 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 107 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 108 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 109 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 110 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 111 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 112 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 113 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 114 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 115 | 3300046453 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046538 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300046690 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300046809 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300046810 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300047320 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300047470 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere | Metagenome | Rhizosphere |
| 127 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 128 | 3300048906 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 | Metagenome | Rhizoplane |
| 129 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 130 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 131 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 132 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 133 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 134 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 135 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 136 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 137 | 3300049766 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought | Metagenome | Rhizosphere |
| 138 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 84.76 |
| Metatranscriptomes | 0.48 |
| Isolates | 14.76 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 10.95 |
| Nodule | 3.81 |
| Rhizoplane | 0.48 |
| Rhizosphere | 59.52 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 25.24 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI24740J21852_10000221 | 3300001979 | Bacteria | 24094 |
| 2 | JGI25155J39150_1000116 | 3300002704 | Bacteria | 39494 |
| 3 | JGI25155J39150_1000296 | 3300002704 | Bacteria | 17018 |
| 4 | JGI25156J39149_1000032 | 3300002705 | Bacteria | 118609 |
| 5 | JGI25156J39149_1009288 | 3300002705 | Bacteria | 2402 |
| 6 | JGI25154J39366_1000218 | 3300002738 | Bacteria | 39523 |
| 7 | JGI25154J39366_1000506 | 3300002738 | Bacteria | 19861 |
| 8 | JGI25154J39366_1000517 | 3300002738 | Bacteria | 19527 |
| 9 | JGI25157J39369_1000212 | 3300002741 | Bacteria | 48259 |
| 10 | rootH1_10160939 | 3300003323 | Bacteria | 2675 |
| 11 | Ga0007409J51694_1100021 | 3300003575 | Bacteria | 2309 |
| 12 | Ga0055538_1000020 | 3300003751 | Bacteria | 264193 |
| 13 | Ga0055539_1000025 | 3300003752 | Bacteria | 264193 |
| 14 | Ga0055533_1000034 | 3300003756 | Bacteria | 264193 |
| 15 | Ga0055533_1000442 | 3300003756 | Bacteria | 15755 |
| 16 | Ga0055532_1000083 | 3300003758 | Bacteria | 118609 |
| 17 | Ga0055525_1000044 | 3300003759 | Bacteria | 264193 |
| 18 | Ga0055542_1000983 | 3300003762 | Bacteria | 18498 |
| 19 | Ga0055541_1000019 | 3300003841 | Bacteria | 264193 |
| 20 | Ga0055541_1000782 | 3300003841 | Bacteria | 7965 |
| 21 | Ga0070659_100002067 | 3300005366 | Bacteria | 14323 |
| 22 | Ga0070714_100036425 | 3300005435 | Unclassified | 4127 |
| 23 | Ga0070713_100011225 | 3300005436 | Bacteria | 6514 |
| 24 | Ga0070713_100049066 | 3300005436 | Bacteria | 3481 |
| 25 | Ga0070708_100071950 | 3300005445 | Bacteria | 3114 |
| 26 | Ga0070681_10039081 | 3300005458 | Unclassified | 4757 |
| 27 | Ga0070706_100026566 | 3300005467 | Bacteria | 5326 |
| 28 | Ga0070706_100078697 | 3300005467 | Bacteria | 3052 |
| 29 | Ga0070699_100279048 | 3300005518 | Unclassified | 1496 |
| 30 | Ga0070697_100038659 | 3300005536 | Bacteria | 3857 |
| 31 | Ga0070665_100069174 | 3300005548 | Bacteria | 3538 |
| 32 | Ga0068855_100000197 | 3300005563 | Bacteria | 78127 |
| 33 | Ga0068855_100005371 | 3300005563 | Bacteria | 15630 |
| 34 | Ga0068855_100008882 | 3300005563 | Bacteria | 12148 |
| 35 | Ga0068855_100109787 | 3300005563 | Bacteria | 3167 |
| 36 | Ga0068856_100104230 | 3300005614 | Bacteria | 2830 |
| 37 | Ga0068852_100112655 | 3300005616 | Bacteria | 2476 |
| 38 | Ga0070717_10051063 | 3300006028 | Bacteria | 3402 |
| 39 | Ga0070712_100270352 | 3300006175 | Bacteria | 1365 |
| 40 | Ga0079104_1005078 | 3300006946 | Bacteria | 5364 |
| 41 | Ga0079104_1009679 | 3300006946 | Bacteria | 3246 |
| 42 | Ga0105244_10030987 | 3300009036 | Bacteria | 2841 |
| 43 | Ga0105240_10001798 | 3300009093 | Bacteria | 36105 |
| 44 | Ga0105240_10022872 | 3300009093 | Bacteria | 8282 |
| 45 | Ga0105240_10035343 | 3300009093 | Bacteria | 6441 |
| 46 | Ga0105240_10067929 | 3300009093 | Bacteria | 4416 |
| 47 | Ga0105240_10204574 | 3300009093 | Unclassified | 2312 |
| 48 | Ga0105237_10017509 | 3300009545 | Bacteria | 7426 |
| 49 | Ga0105237_10048982 | 3300009545 | Unclassified | 4248 |
| 50 | Ga0105237_10080098 | 3300009545 | Unclassified | 3256 |
| 51 | Ga0105237_10208584 | 3300009545 | Bacteria | 1954 |
| 52 | Ga0105238_10000104 | 3300009551 | Bacteria | 94726 |
| 53 | Ga0105238_10025966 | 3300009551 | Bacteria | 5971 |
| 54 | Ga0105238_10214030 | 3300009551 | Bacteria | 1903 |
| 55 | Ga0105239_10059943 | 3300010375 | Bacteria | 4176 |
| 56 | Ga0105239_10506035 | 3300010375 | Bacteria | 1373 |
| 57 | Ga0157369_10017114 | 3300013105 | Bacteria | 8146 |
| 58 | Ga0163162_10182666 | 3300013306 | Bacteria | 2224 |
| 59 | Ga0163163_10149116 | 3300014325 | Unclassified | 2383 |
| 60 | Ga0182008_10008802 | 3300014497 | Bacteria | 5484 |
| 61 | Ga0182008_10036503 | 3300014497 | Bacteria | 2459 |
| 62 | Ga0182006_1000008 | 3300015261 | Bacteria | 449652 |
| 63 | Ga0182006_1000800 | 3300015261 | Bacteria | 21152 |
| 64 | Ga0182006_1015196 | 3300015261 | Bacteria | 3302 |
| 65 | Ga0182007_10025337 | 3300015262 | Bacteria | 2067 |
| 66 | Ga0182005_1000022 | 3300015265 | Bacteria | 266181 |
| 67 | Ga0213872_10000615 | 3300021361 | Bacteria | 26974 |
| 68 | Ga0213872_10001653 | 3300021361 | Bacteria | 14045 |
| 69 | Ga0213872_10007826 | 3300021361 | Bacteria | 5221 |
| 70 | Ga0213872_10062447 | 3300021361 | Bacteria | 1683 |
| 71 | Ga0213876_10002710 | 3300021384 | Bacteria | 10318 |
| 72 | Ga0213876_10027229 | 3300021384 | Bacteria | 3017 |
| 73 | Ga0209435_100013 | 3300025206 | Bacteria | 366789 |
| 74 | Ga0209435_100306 | 3300025206 | Bacteria | 11865 |
| 75 | Ga0209784_100002 | 3300025224 | Bacteria | 1753105 |
| 76 | Ga0209784_100160 | 3300025224 | Bacteria | 60798 |
| 77 | Ga0209566_100003 | 3300025225 | Bacteria | 1753105 |
| 78 | Ga0209566_101338 | 3300025225 | Bacteria | 7845 |
| 79 | Ga0209674_100004 | 3300025226 | Bacteria | 1753105 |
| 80 | Ga0209674_100118 | 3300025226 | Bacteria | 135635 |
| 81 | Ga0209147_100030 | 3300025229 | Bacteria | 366789 |
| 82 | Ga0209563_100006 | 3300025230 | Bacteria | 1753105 |
| 83 | Ga0209437_100275 | 3300025233 | Bacteria | 76419 |
| 84 | Ga0209258_100433 | 3300025242 | Bacteria | 48200 |
| 85 | Ga0209646_1000034 | 3300025246 | Bacteria | 366789 |
| 86 | Ga0209646_1000059 | 3300025246 | Bacteria | 256909 |
| 87 | Ga0209646_1000378 | 3300025246 | Bacteria | 28778 |
| 88 | Ga0209026_1000022 | 3300025250 | Bacteria | 366789 |
| 89 | Ga0209026_1003280 | 3300025250 | Bacteria | 5414 |
| 90 | Ga0209677_100003 | 3300025253 | Bacteria | 1753105 |
| 91 | Ga0209677_104946 | 3300025253 | Bacteria | 3635 |
| 92 | Ga0209148_1000021 | 3300025254 | Bacteria | 714645 |
| 93 | Ga0209759_1000018 | 3300025256 | Bacteria | 366789 |
| 94 | Ga0209759_1000553 | 3300025256 | Bacteria | 38286 |
| 95 | Ga0209759_1008707 | 3300025256 | Bacteria | 3137 |
| 96 | Ga0207684_10032688 | 3300025910 | Bacteria | 4424 |
| 97 | Ga0207695_10001636 | 3300025913 | Bacteria | 36191 |
| 98 | Ga0207695_10003700 | 3300025913 | Bacteria | 21312 |
| 99 | Ga0207695_10022949 | 3300025913 | Bacteria | 7067 |
| 100 | Ga0207695_10113171 | 3300025913 | Bacteria | 2690 |
| 101 | Ga0207695_10136056 | 3300025913 | Bacteria | 2410 |
| 102 | Ga0207671_10011556 | 3300025914 | Bacteria | 7171 |
| 103 | Ga0207657_10099088 | 3300025919 | Bacteria | 2421 |
| 104 | Ga0207694_10000188 | 3300025924 | Bacteria | 62768 |
| 105 | Ga0207694_10226739 | 3300025924 | Bacteria | 1525 |
| 106 | Ga0207700_10012802 | 3300025928 | Bacteria | 5425 |
| 107 | Ga0207690_10006012 | 3300025932 | Bacteria | 7192 |
| 108 | Ga0207665_10116077 | 3300025939 | Unclassified | 1886 |
| 109 | Ga0207667_10000034 | 3300025949 | Bacteria | 304569 |
| 110 | Ga0207667_10003806 | 3300025949 | Bacteria | 18566 |
| 111 | Ga0207667_10006292 | 3300025949 | Bacteria | 14401 |
| 112 | Ga0207667_10219261 | 3300025949 | Bacteria | 1949 |
| 113 | Ga0207667_10251278 | 3300025949 | Bacteria | 1809 |
| 114 | Ga0207640_10028818 | 3300025981 | Bacteria | 3400 |
| 115 | Ga0207702_10076698 | 3300026078 | Bacteria | 2890 |
| 116 | Ga0207698_10034457 | 3300026142 | Bacteria | 3691 |
| 117 | Ga0209281_1008179 | 3300027111 | Bacteria | 2562 |
| 118 | Ga0209281_1010651 | 3300027111 | Bacteria | 2094 |
| 119 | Ga0268266_10012386 | 3300028379 | Bacteria | 7371 |
| 120 | Ga0307511_10000115 | 3300030521 | Bacteria | 72695 |
| 121 | Ga0316181_1134980 | 3300030744 | Bacteria | 3351 |
| 122 | Ga0265331_10014297 | 3300031250 | Bacteria | 4233 |
| 123 | Ga0307518_10068766 | 3300031838 | Bacteria | 2566 |
| 124 | Ga0395901_0036198 | 3300038443 | Bacteria | 5100 |
| 125 | Ga0436365_0703178 | 3300039437 | Bacteria | 17986 |
| 126 | Ga0436365_1416355 | 3300039437 | Bacteria | 117881 |
| 127 | Ga0436365_1557651 | 3300039437 | Bacteria | 2975 |
| 128 | Ga0436365_1863158 | 3300039437 | Bacteria | 9897 |
| 129 | Ga0436360_0425337 | 3300039438 | Bacteria | 1336 |
| 130 | Ga0436360_0524464 | 3300039438 | Bacteria | 8427 |
| 131 | Ga0436361_0085675 | 3300039447 | Bacteria | 2737 |
| 132 | Ga0436361_0191418 | 3300039447 | Unclassified | 3490 |
| 133 | Ga0436361_0527908 | 3300039447 | Bacteria | 2296 |
| 134 | Ga0436361_0573668 | 3300039447 | Bacteria | 8753 |
| 135 | Ga0436361_0872724 | 3300039447 | Bacteria | 57229 |
| 136 | Ga0436361_0901587 | 3300039447 | Bacteria | 3457 |
| 137 | Ga0466969_0011590 | 3300044656 | Bacteria | 4667 |
| 138 | Ga0466969_0014672 | 3300044656 | Bacteria | 4119 |
| 139 | Ga0466965_0034790 | 3300044683 | Bacteria | 2466 |
| 140 | Ga0466961_0003618 | 3300044693 | Bacteria | 9631 |
| 141 | Ga0466970_0068760 | 3300044765 | Unclassified | 1903 |
| 142 | Ga0466959_0008010 | 3300045049 | Bacteria | 7444 |
| 143 | Ga0466959_0015428 | 3300045049 | Bacteria | 5565 |
| 144 | Ga0466959_0057347 | 3300045049 | Bacteria | 2839 |
| 145 | Ga0466959_0062281 | 3300045049 | Bacteria | 2711 |
| 146 | Ga0451576_0311442 | 3300045051 | Bacteria | 1647 |
| 147 | Ga0495627_000001 | 3300046453 | Bacteria | 1104709 |
| 148 | Ga0495650_0000082 | 3300046471 | Bacteria | 239477 |
| 149 | Ga0495650_0002717 | 3300046471 | Bacteria | 13716 |
| 150 | Ga0495606_0000089 | 3300046507 | Bacteria | 154743 |
| 151 | Ga0495610_0003366 | 3300046512 | Bacteria | 12533 |
| 152 | Ga0495610_0004792 | 3300046512 | Bacteria | 9869 |
| 153 | Ga0495609_0000085 | 3300046538 | Bacteria | 112739 |
| 154 | Ga0495633_0000047 | 3300046558 | Bacteria | 165890 |
| 155 | Ga0495625_0000493 | 3300046660 | Bacteria | 59205 |
| 156 | Ga0495625_0042396 | 3300046660 | Bacteria | 3307 |
| 157 | Ga0495624_0111517 | 3300046690 | Bacteria | 1682 |
| 158 | Ga0495600_0005886 | 3300046809 | Bacteria | 7418 |
| 159 | Ga0495660_0000024 | 3300046810 | Bacteria | 268209 |
| 160 | Ga0495660_0000970 | 3300046810 | Bacteria | 20959 |
| 161 | Ga0495672_0000022 | 3300047320 | Bacteria | 420632 |
| 162 | Ga0495681_0007450 | 3300047470 | Bacteria | 6992 |
| 163 | Ga0495686_0000321 | 3300047472 | Bacteria | 79813 |
| 164 | Ga0496103_0016139 | 3300048906 | Bacteria | 4457 |
| 165 | Ga0496116_0007969 | 3300048919 | Bacteria | 9279 |
| 166 | Ga0496116_0035181 | 3300048919 | Bacteria | 3521 |
| 167 | Ga0496118_0107877 | 3300048921 | Bacteria | 1858 |
| 168 | Ga0496121_0002913 | 3300048924 | Bacteria | 25104 |
| 169 | Ga0496121_0052417 | 3300048924 | Bacteria | 3427 |
| 170 | Ga0496121_0061403 | 3300048924 | Bacteria | 3084 |
| 171 | Ga0496122_0000134 | 3300048925 | Bacteria | 171080 |
| 172 | Ga0496123_0000307 | 3300048926 | Bacteria | 95174 |
| 173 | Ga0496124_0012504 | 3300048927 | Bacteria | 8371 |
| 174 | Ga0496125_0000433 | 3300048928 | Bacteria | 76686 |
| 175 | Ga0495678_000002 | 3300049459 | Bacteria | 999613 |
| 176 | Ga0495678_005232 | 3300049459 | Bacteria | 7234 |
| 177 | Ga0495678_009025 | 3300049459 | Bacteria | 4978 |
| 178 | Ga0501269_000100 | 3300049766 | Bacteria | 26901 |
| 179 | Ga0500618_003181 | 3300053125 | Bacteria | 5761 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300044765 | Ga0466970_0068760 | Ga0466970_0068760_496_1524 | 324 |
| 2 | iso_pu_bacteria | 2884811622 | 2884815278 | 327 |
| 3 | iso_pu_bacteria | 2884811622 | 2884815314 | 327 |
| 4 | 3300039447 | Ga0436361_0085675 | Ga0436361_0085675_52_1149 | 328 |
| 5 | 3300009551 | Ga0105238_10214030 | Ga0105238_102140302 | 340 |
| 6 | 3300049459 | Ga0495678_005232 | Ga0495678_005232_1830_2858 | 340 |
| 7 | 3300039438 | Ga0436360_0425337 | Ga0436360_0425337_263_1312 | 346 |
| 8 | 3300039437 | Ga0436365_1557651 | Ga0436365_1557651_124_1251 | 354 |
| 9 | 3300005548 | Ga0070665_100069174 | Ga0070665_1000691744 | 356 |
| 10 | 3300009545 | Ga0105237_10080098 | Ga0105237_100800982 | 356 |
| 11 | 3300014325 | Ga0163163_10149116 | Ga0163163_101491162 | 356 |
| 12 | 3300028379 | Ga0268266_10012386 | Ga0268266_100123864 | 356 |
| 13 | 3300009093 | Ga0105240_10067929 | Ga0105240_100679293 | 360 |
| 14 | 3300003323 | rootH1_10160939 | rootH1_101609392 | 364 |
| 15 | 3300047472 | Ga0495686_0000321 | Ga0495686_0000321_6760_7902 | 366 |
| 16 | 3300009545 | Ga0105237_10048982 | Ga0105237_100489821 | 368 |
| 17 | 3300025914 | Ga0207671_10011556 | Ga0207671_100115561 | 368 |
| 18 | 3300046809 | Ga0495600_0005886 | Ga0495600_0005886_6153_7367 | 368 |
| 19 | iso_pu_bacteria | 2511231003 | 2511250342 | 368 |
| 20 | iso_pu_bacteria | 2548876994 | 2550695472 | 368 |
| 21 | iso_pu_bacteria | 2818991445 | 2819591803 | 368 |
| 22 | iso_pu_bacteria | 2884836552 | 2884837606 | 368 |
| 23 | iso_pu_bacteria | 2884852848 | 2884853897 | 368 |
| 24 | iso_pu_bacteria | 2896154374 | 2896154986 | 368 |
| 25 | iso_pu_bacteria | 2857553236 | 2857555332 | 369 |
| 26 | 3300031838 | Ga0307518_10068766 | Ga0307518_100687662 | 370 |
| 27 | 3300044656 | Ga0466969_0014672 | Ga0466969_0014672_952_2088 | 370 |
| 28 | 3300045049 | Ga0466959_0008010 | Ga0466959_0008010_972_2108 | 370 |
| 29 | iso_pu_bacteria | 2547132103 | 2547373927 | 370 |
| 30 | iso_pu_bacteria | 2843690924 | 2843693175 | 370 |
| 31 | iso_pu_bacteria | 2919476304 | 2919477692 | 370 |
| 32 | 3300021384 | Ga0213876_10002710 | Ga0213876_100027104 | 371 |
| 33 | 3300039437 | Ga0436365_1416355 | Ga0436365_1416355_19348_20481 | 371 |
| 34 | 3300048924 | Ga0496121_0002913 | Ga0496121_0002913_15000_16178 | 371 |
| 35 | 3300002704 | JGI25155J39150_1000116 | JGI25155J39150_100011622 | 372 |
| 36 | 3300002704 | JGI25155J39150_1000296 | JGI25155J39150_10002968 | 372 |
| 37 | 3300002705 | JGI25156J39149_1000032 | JGI25156J39149_100003296 | 372 |
| 38 | 3300002738 | JGI25154J39366_1000218 | JGI25154J39366_100021817 | 372 |
| 39 | 3300002738 | JGI25154J39366_1000506 | JGI25154J39366_10005069 | 372 |
| 40 | 3300002741 | JGI25157J39369_1000212 | JGI25157J39369_100021217 | 372 |
| 41 | 3300003575 | Ga0007409J51694_1100021 | Ga0007409J51694_11000211 | 372 |
| 42 | 3300003758 | Ga0055532_1000083 | Ga0055532_100008317 | 372 |
| 43 | 3300005563 | Ga0068855_100109787 | Ga0068855_1001097872 | 372 |
| 44 | 3300005614 | Ga0068856_100104230 | Ga0068856_1001042302 | 372 |
| 45 | 3300005616 | Ga0068852_100112655 | Ga0068852_1001126552 | 372 |
| 46 | 3300009036 | Ga0105244_10030987 | Ga0105244_100309872 | 372 |
| 47 | 3300009093 | Ga0105240_10001798 | Ga0105240_1000179814 | 372 |
| 48 | 3300009551 | Ga0105238_10025966 | Ga0105238_100259661 | 372 |
| 49 | 3300014497 | Ga0182008_10036503 | Ga0182008_100365033 | 372 |
| 50 | 3300025206 | Ga0209435_100013 | Ga0209435_10001396 | 372 |
| 51 | 3300025206 | Ga0209435_100306 | Ga0209435_1003069 | 372 |
| 52 | 3300025229 | Ga0209147_100030 | Ga0209147_100030258 | 372 |
| 53 | 3300025233 | Ga0209437_100275 | Ga0209437_10027571 | 372 |
| 54 | 3300025242 | Ga0209258_100433 | Ga0209258_1004334 | 372 |
| 55 | 3300025246 | Ga0209646_1000034 | Ga0209646_100003496 | 372 |
| 56 | 3300025246 | Ga0209646_1000378 | Ga0209646_100037819 | 372 |
| 57 | 3300025250 | Ga0209026_1000022 | Ga0209026_100002296 | 372 |
| 58 | 3300025256 | Ga0209759_1000018 | Ga0209759_100001896 | 372 |
| 59 | 3300025256 | Ga0209759_1000553 | Ga0209759_100055320 | 372 |
| 60 | 3300025913 | Ga0207695_10001636 | Ga0207695_1000163614 | 372 |
| 61 | 3300025924 | Ga0207694_10226739 | Ga0207694_102267391 | 372 |
| 62 | 3300025949 | Ga0207667_10003806 | Ga0207667_1000380618 | 372 |
| 63 | 3300025949 | Ga0207667_10251278 | Ga0207667_102512782 | 372 |
| 64 | 3300026078 | Ga0207702_10076698 | Ga0207702_100766982 | 372 |
| 65 | 3300026142 | Ga0207698_10034457 | Ga0207698_100344574 | 372 |
| 66 | 3300030744 | Ga0316181_1134980 | Ga0316181_11349802 | 372 |
| 67 | 3300039437 | Ga0436365_1863158 | Ga0436365_1863158_4911_6041 | 372 |
| 68 | 3300045051 | Ga0451576_0311442 | Ga0451576_0311442_165_1298 | 372 |
| 69 | 3300046453 | Ga0495627_000001 | Ga0495627_000001_222361_223506 | 372 |
| 70 | 3300046471 | Ga0495650_0000082 | Ga0495650_0000082_206953_208086 | 372 |
| 71 | 3300046471 | Ga0495650_0002717 | Ga0495650_0002717_6215_7345 | 372 |
| 72 | 3300046512 | Ga0495610_0003366 | Ga0495610_0003366_2166_3314 | 372 |
| 73 | 3300046512 | Ga0495610_0004792 | Ga0495610_0004792_5296_6444 | 372 |
| 74 | 3300046538 | Ga0495609_0000085 | Ga0495609_0000085_103991_105136 | 372 |
| 75 | 3300046558 | Ga0495633_0000047 | Ga0495633_0000047_74187_75335 | 372 |
| 76 | 3300046660 | Ga0495625_0000493 | Ga0495625_0000493_18556_19731 | 372 |
| 77 | 3300046660 | Ga0495625_0042396 | Ga0495625_0042396_1790_2950 | 372 |
| 78 | 3300046810 | Ga0495660_0000024 | Ga0495660_0000024_143929_145074 | 372 |
| 79 | 3300046810 | Ga0495660_0000970 | Ga0495660_0000970_15876_17021 | 372 |
| 80 | 3300047470 | Ga0495681_0007450 | Ga0495681_0007450_1424_2569 | 372 |
| 81 | 3300048906 | Ga0496103_0016139 | Ga0496103_0016139_1247_2407 | 372 |
| 82 | 3300048919 | Ga0496116_0007969 | Ga0496116_0007969_6675_7850 | 372 |
| 83 | 3300048921 | Ga0496118_0107877 | Ga0496118_0107877_382_1557 | 372 |
| 84 | 3300048924 | Ga0496121_0052417 | Ga0496121_0052417_1980_3155 | 372 |
| 85 | 3300048925 | Ga0496122_0000134 | Ga0496122_0000134_114420_115595 | 372 |
| 86 | 3300048926 | Ga0496123_0000307 | Ga0496123_0000307_40125_41300 | 372 |
| 87 | 3300048927 | Ga0496124_0012504 | Ga0496124_0012504_7208_8353 | 372 |
| 88 | 3300048928 | Ga0496125_0000433 | Ga0496125_0000433_17995_19170 | 372 |
| 89 | 3300049459 | Ga0495678_000002 | Ga0495678_000002_334025_335170 | 372 |
| 90 | 3300049459 | Ga0495678_009025 | Ga0495678_009025_2122_3252 | 372 |
| 91 | 3300049766 | Ga0501269_000100 | Ga0501269_000100_11960_13108 | 372 |
| 92 | iso_pu_bacteria | 2904424332 | 2904425061 | 372 |
| 93 | 3300030521 | Ga0307511_10000115 | Ga0307511_1000011556 | 373 |
| 94 | iso_pu_bacteria | 2846033681 | 2846036802 | 373 |
| 95 | iso_pu_bacteria | 2846037992 | 2846041445 | 373 |
| 96 | 3300006946 | Ga0079104_1005078 | Ga0079104_10050785 | 374 |
| 97 | 3300015261 | Ga0182006_1000008 | Ga0182006_100000821 | 374 |
| 98 | 3300015262 | Ga0182007_10025337 | Ga0182007_100253372 | 374 |
| 99 | 3300015265 | Ga0182005_1000022 | Ga0182005_100002247 | 374 |
| 100 | 3300027111 | Ga0209281_1010651 | Ga0209281_10106512 | 374 |
| 101 | 3300039438 | Ga0436360_0524464 | Ga0436360_0524464_7241_8377 | 374 |
| 102 | 3300005436 | Ga0070713_100011225 | Ga0070713_1000112255 | 375 |
| 103 | 3300005445 | Ga0070708_100071950 | Ga0070708_1000719503 | 375 |
| 104 | 3300005458 | Ga0070681_10039081 | Ga0070681_100390814 | 375 |
| 105 | 3300005467 | Ga0070706_100078697 | Ga0070706_1000786973 | 375 |
| 106 | 3300005518 | Ga0070699_100279048 | Ga0070699_1002790482 | 375 |
| 107 | 3300005563 | Ga0068855_100008882 | Ga0068855_1000088826 | 375 |
| 108 | 3300009093 | Ga0105240_10022872 | Ga0105240_100228725 | 375 |
| 109 | 3300009093 | Ga0105240_10035343 | Ga0105240_100353432 | 375 |
| 110 | 3300009093 | Ga0105240_10204574 | Ga0105240_102045742 | 375 |
| 111 | 3300009545 | Ga0105237_10017509 | Ga0105237_100175092 | 375 |
| 112 | 3300010375 | Ga0105239_10506035 | Ga0105239_105060352 | 375 |
| 113 | 3300013105 | Ga0157369_10017114 | Ga0157369_100171144 | 375 |
| 114 | 3300025913 | Ga0207695_10022949 | Ga0207695_100229495 | 375 |
| 115 | 3300025913 | Ga0207695_10113171 | Ga0207695_101131712 | 375 |
| 116 | 3300025913 | Ga0207695_10136056 | Ga0207695_101360562 | 375 |
| 117 | 3300025949 | Ga0207667_10219261 | Ga0207667_102192612 | 375 |
| 118 | 3300031250 | Ga0265331_10014297 | Ga0265331_100142975 | 375 |
| 119 | 3300045049 | Ga0466959_0062281 | Ga0466959_0062281_652_1809 | 375 |
| 120 | 3300046507 | Ga0495606_0000089 | Ga0495606_0000089_104555_105697 | 375 |
| 121 | iso_pu_bacteria | 2511231026 | 2511385222 | 375 |
| 122 | iso_pu_bacteria | 2885266251 | 2885268358 | 375 |
| 123 | 3300006946 | Ga0079104_1009679 | Ga0079104_10096792 | 376 |
| 124 | 3300021361 | Ga0213872_10000615 | Ga0213872_100006158 | 376 |
| 125 | 3300027111 | Ga0209281_1008179 | Ga0209281_10081793 | 376 |
| 126 | 3300039447 | Ga0436361_0191418 | Ga0436361_0191418_178_1326 | 376 |
| 127 | 3300039447 | Ga0436361_0872724 | Ga0436361_0872724_18631_19761 | 376 |
| 128 | 3300044656 | Ga0466969_0011590 | Ga0466969_0011590_897_2042 | 376 |
| 129 | 3300044683 | Ga0466965_0034790 | Ga0466965_0034790_747_1892 | 376 |
| 130 | 3300044693 | Ga0466961_0003618 | Ga0466961_0003618_2214_3347 | 376 |
| 131 | 3300045049 | Ga0466959_0057347 | Ga0466959_0057347_1069_2214 | 376 |
| 132 | iso_pu_bacteria | 2521172590 | 2521558647 | 376 |
| 133 | iso_pu_bacteria | 2551306416 | 2553004379 | 376 |
| 134 | iso_pu_bacteria | 2765235838 | 2765569755 | 376 |
| 135 | iso_pu_bacteria | 2818991449 | 2819614123 | 376 |
| 136 | iso_pu_bacteria | 2839094727 | 2839097306 | 376 |
| 137 | iso_pu_bacteria | 2919046199 | 2919047082 | 376 |
| 138 | iso_pu_bacteria | 2923510766 | 2923512225 | 376 |
| 139 | iso_pu_bacteria | 2928130867 | 2928131883 | 376 |
| 140 | 3300003751 | Ga0055538_1000020 | Ga0055538_1000020165 | 377 |
| 141 | 3300003752 | Ga0055539_1000025 | Ga0055539_1000025165 | 377 |
| 142 | 3300003756 | Ga0055533_1000034 | Ga0055533_100003479 | 377 |
| 143 | 3300003759 | Ga0055525_1000044 | Ga0055525_1000044165 | 377 |
| 144 | 3300003841 | Ga0055541_1000019 | Ga0055541_1000019165 | 377 |
| 145 | 3300005563 | Ga0068855_100000197 | Ga0068855_10000019720 | 377 |
| 146 | 3300005563 | Ga0068855_100005371 | Ga0068855_10000537114 | 377 |
| 147 | 3300009545 | Ga0105237_10208584 | Ga0105237_102085842 | 377 |
| 148 | 3300009551 | Ga0105238_10000104 | Ga0105238_1000010416 | 377 |
| 149 | 3300010375 | Ga0105239_10059943 | Ga0105239_100599435 | 377 |
| 150 | 3300013306 | Ga0163162_10182666 | Ga0163162_101826663 | 377 |
| 151 | 3300015261 | Ga0182006_1000800 | Ga0182006_10008002 | 377 |
| 152 | 3300021361 | Ga0213872_10001653 | Ga0213872_1000165311 | 377 |
| 153 | 3300021361 | Ga0213872_10007826 | Ga0213872_100078263 | 377 |
| 154 | 3300025224 | Ga0209784_100002 | Ga0209784_100002166 | 377 |
| 155 | 3300025225 | Ga0209566_100003 | Ga0209566_100003166 | 377 |
| 156 | 3300025226 | Ga0209674_100004 | Ga0209674_100004166 | 377 |
| 157 | 3300025230 | Ga0209563_100006 | Ga0209563_100006166 | 377 |
| 158 | 3300025253 | Ga0209677_100003 | Ga0209677_100003166 | 377 |
| 159 | 3300025913 | Ga0207695_10003700 | Ga0207695_100037005 | 377 |
| 160 | 3300025924 | Ga0207694_10000188 | Ga0207694_1000018847 | 377 |
| 161 | 3300025949 | Ga0207667_10000034 | Ga0207667_10000034260 | 377 |
| 162 | 3300025949 | Ga0207667_10006292 | Ga0207667_100062924 | 377 |
| 163 | 3300025981 | Ga0207640_10028818 | Ga0207640_100288182 | 377 |
| 164 | 3300039447 | Ga0436361_0901587 | Ga0436361_0901587_2091_3281 | 377 |
| 165 | 3300048919 | Ga0496116_0035181 | Ga0496116_0035181_1970_3178 | 377 |
| 166 | 3300048924 | Ga0496121_0061403 | Ga0496121_0061403_1019_2227 | 377 |
| 167 | iso_pu_bacteria | 2904439833 | 2904444060 | 377 |
| 168 | iso_pu_bacteria | 2904530477 | 2904534396 | 377 |
| 169 | iso_pu_bacteria | 2904584206 | 2904584287 | 377 |
| 170 | iso_pu_bacteria | 2904589729 | 2904590756 | 377 |
| 171 | iso_pu_bacteria | 2904601388 | 2904603405 | 377 |
| 172 | iso_pu_bacteria | 2919079590 | 2919080591 | 377 |
| 173 | 3300045049 | Ga0466959_0015428 | Ga0466959_0015428_2102_3238 | 378 |
| 174 | 3300046690 | Ga0495624_0111517 | Ga0495624_0111517_388_1602 | 378 |
| 175 | 3300047320 | Ga0495672_0000022 | Ga0495672_0000022_192062_193219 | 378 |
| 176 | 3300053125 | Ga0500618_003181 | Ga0500618_003181_1556_2860 | 378 |
| 177 | 3300001979 | JGI24740J21852_10000221 | JGI24740J21852_1000022114 | 379 |
| 178 | 3300002705 | JGI25156J39149_1009288 | JGI25156J39149_10092882 | 379 |
| 179 | 3300002738 | JGI25154J39366_1000517 | JGI25154J39366_10005175 | 379 |
| 180 | 3300003756 | Ga0055533_1000442 | Ga0055533_10004425 | 379 |
| 181 | 3300003762 | Ga0055542_1000983 | Ga0055542_10009835 | 379 |
| 182 | 3300003841 | Ga0055541_1000782 | Ga0055541_10007825 | 379 |
| 183 | 3300005366 | Ga0070659_100002067 | Ga0070659_1000020677 | 379 |
| 184 | 3300005435 | Ga0070714_100036425 | Ga0070714_1000364253 | 379 |
| 185 | 3300005436 | Ga0070713_100049066 | Ga0070713_1000490661 | 379 |
| 186 | 3300005467 | Ga0070706_100026566 | Ga0070706_1000265663 | 379 |
| 187 | 3300005536 | Ga0070697_100038659 | Ga0070697_1000386591 | 379 |
| 188 | 3300006028 | Ga0070717_10051063 | Ga0070717_100510632 | 379 |
| 189 | 3300006175 | Ga0070712_100270352 | Ga0070712_1002703521 | 379 |
| 190 | 3300014497 | Ga0182008_10008802 | Ga0182008_100088022 | 379 |
| 191 | 3300015261 | Ga0182006_1015196 | Ga0182006_10151964 | 379 |
| 192 | 3300021361 | Ga0213872_10062447 | Ga0213872_100624472 | 379 |
| 193 | 3300021384 | Ga0213876_10027229 | Ga0213876_100272292 | 379 |
| 194 | 3300025224 | Ga0209784_100160 | Ga0209784_10016041 | 379 |
| 195 | 3300025225 | Ga0209566_101338 | Ga0209566_1013383 | 379 |
| 196 | 3300025226 | Ga0209674_100118 | Ga0209674_10011843 | 379 |
| 197 | 3300025246 | Ga0209646_1000059 | Ga0209646_1000059209 | 379 |
| 198 | 3300025250 | Ga0209026_1003280 | Ga0209026_10032802 | 379 |
| 199 | 3300025253 | Ga0209677_104946 | Ga0209677_1049462 | 379 |
| 200 | 3300025254 | Ga0209148_1000021 | Ga0209148_100002191 | 379 |
| 201 | 3300025256 | Ga0209759_1008707 | Ga0209759_10087072 | 379 |
| 202 | 3300025910 | Ga0207684_10032688 | Ga0207684_100326884 | 379 |
| 203 | 3300025919 | Ga0207657_10099088 | Ga0207657_100990882 | 379 |
| 204 | 3300025928 | Ga0207700_10012802 | Ga0207700_100128022 | 379 |
| 205 | 3300025932 | Ga0207690_10006012 | Ga0207690_100060122 | 379 |
| 206 | 3300025939 | Ga0207665_10116077 | Ga0207665_101160772 | 379 |
| 207 | 3300038443 | Ga0395901_0036198 | Ga0395901_0036198_2868_4031 | 379 |
| 208 | 3300039437 | Ga0436365_0703178 | Ga0436365_0703178_3300_4484 | 379 |
| 209 | 3300039447 | Ga0436361_0527908 | Ga0436361_0527908_521_1681 | 379 |
| 210 | 3300039447 | Ga0436361_0573668 | Ga0436361_0573668_3686_4849 | 379 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1e0b-assembly1.cif.gz_B | chromo shadow domain from fission yeast swi6 protein. | 0.6959 | 65 | 82 |
| 3w63-assembly1.cif.gz_A-2 | mamm-ctd 215-293 | 0.6496 | 336 | 369 |
| 6h8d-assembly1.cif.gz_A-2 | mamm ctd d249n - nickel form | 0.6491 | 336 | 369 |
| 4bts-assembly1.cif.gz_AW | the crystal structure of the eukaryotic 40s ribosomal subunit in complex with eif1 and eif1a | 0.6479 | 62 | 99 |
| 6ha2-assembly1.cif.gz_A-2 | mamm ctd d249h-h285d | 0.6365 | 336 | 369 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q60342_11_181_3.30.2110.10 | Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like | 0.9247 | 23 | 195 | 3.30.2110.10 |
| af_Q60342_11_181_3.30.2110.10 | Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like | 0.9143 | 23 | 195 | 3.30.2110.10 |
| 1sr8A02 | Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like | 0.8677 | 23 | 195 | 3.30.2110.10 |
| 1sr8A02 | Alpha Beta;2-Layer Sandwich;CbiD-like;CbiD-like | 0.8571 | 23 | 195 | 3.30.2110.10 |
| af_Q2FVD9_38_137_3.10.450.130 | Alpha Beta;Roll;Nuclear Transport Factor 2; Chain: A,;folded 79 residue fragment of lin0334 like domains | 0.7583 | 65 | 99 | 3.10.450.130 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A7C2FMW0-F1-model_v4 | Cobalt-precorrin-5B (C(1))-methyltransferase | 0.9505 | 20 | 197 |
GO:0008168
GO:0009236 GO:0032259 |
| AF-Q1J3Y4-F1-model_v4 | Cobalt-precorrin-5B C(1)-methyltransferase (EC 2.1.1.195) (Cobalt-precorrin-6A synthase) | 0.9456 | 8 | 376 |
GO:0019251
GO:0032259 GO:0043780 |
| AF-H8GXZ9-F1-model_v4 | Cobalt-precorrin-5B C(1)-methyltransferase (EC 2.1.1.195) (Cobalt-precorrin-6A synthase) | 0.942 | 50 | 376 |
GO:0019251
GO:0032259 GO:0043780 |
| AF-A0A5F0LT28-F1-model_v4 | Cobalt-precorrin-6A synthase | 0.9354 | 2 | 84 |
GO:0008168
GO:0009236 GO:0032259 |
| AF-A0A7C5XDX0-F1-model_v4 | Cobalt-precorrin-5B (C(1))-methyltransferase | 0.9346 | 18 | 220 |
GO:0008168
GO:0009236 GO:0016020 GO:0032259 |
Predicted Structure (AlphaFold2)
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