F319885

General Info

Members Datasets Scaffolds Average Seq Length
210 142 420 243

Family's Representative Sequence

Representative Sequence 3300005289|Ga0065704_10188609|Ga0065704_101886091
Length 241
Sequence MTGANFDLFGQPCFGGVLVVSDHASNCVPEDIDLGIAPDLLTQHVAVDIGVAQVGALMAARPGTAAFQCAASRLVCDVNREDSAPACVPVASDGHAIPGNALDHAAREARIARFHAPYHAALADLLDRVPQALIVSLHSFTPRLASSDEDRPWQVGVLYNADDRAARLAIPLLEAEGLIVGDQQPYSGKVLNYTMNRHAETDGRPYLGIEVRQDQIAAPAGQARYAALLGKVSNEIAFRLA

Samples

Sample ID Description Type Environment
1 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
2 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
20 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
30 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
36 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
71 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
76 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
77 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
80 3300034817 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 Metagenome Rhizosphere
81 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
82 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
83 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
84 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
85 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
86 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
87 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
88 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
89 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
90 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
91 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
92 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
93 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
94 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
95 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
96 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
97 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
98 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
99 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
100 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
103 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
104 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
107 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
108 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
111 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
112 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
113 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
114 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
115 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
116 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
117 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
118 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
120 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
121 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
122 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
123 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
124 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
125 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
126 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
127 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
128 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
129 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
130 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
131 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
132 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
133 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
134 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
135 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
136 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
137 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
138 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
139 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified
140 2739367664 Novosphingobium sp. GV002 Isolate Unclassified
141 2739367865 Novosphingobium sp. GV013 Isolate Unclassified
142 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.62
Metatranscriptomes 0
Isolates 2.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.33
Nodule 1.43
Rhizoplane 1.9
Rhizosphere 60
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065704_10188609 3300005289 Bacteria 1200
2 Ga0055530_10004193 3300003791 Bacteria 7592
3 Ga0070658_10015382 3300005327 Bacteria 6123
4 Ga0070658_10030627 3300005327 Bacteria 4322
5 Ga0070658_10071573 3300005327 Bacteria 2840
6 Ga0070666_10293589 3300005335 Bacteria 1157
7 Ga0070682_100118656 3300005337 Bacteria 1773
8 Ga0070660_100045771 3300005339 Bacteria 3351
9 Ga0070660_100069843 3300005339 Bacteria 2740
10 Ga0070661_100013077 3300005344 Bacteria 5822
11 Ga0070668_100024966 3300005347 Bacteria 4530
12 Ga0070669_100012362 3300005353 Bacteria 6057
13 Ga0070669_100570433 3300005353 Bacteria 945
14 Ga0070671_100011348 3300005355 Bacteria 7162
15 Ga0070667_100101332 3300005367 Bacteria 2487
16 Ga0070662_100003070 3300005457 Bacteria 10367
17 Ga0070662_100023257 3300005457 Bacteria 4255
18 Ga0070681_10051813 3300005458 Bacteria 4093
19 Ga0070679_100019861 3300005530 Bacteria 6541
20 Ga0070679_100087303 3300005530 Bacteria 3106
21 Ga0070679_100921425 3300005530 Bacteria 817
22 Ga0070684_100127835 3300005535 Bacteria 2290
23 Ga0068853_100022557 3300005539 Bacteria 5258
24 Ga0068853_100426727 3300005539 Bacteria 1244
25 Ga0068853_100440905 3300005539 Bacteria 1224
26 Ga0070665_100000558 3300005548 Bacteria 51892
27 Ga0070665_100006055 3300005548 Bacteria 12363
28 Ga0068855_100037095 3300005563 Bacteria 5799
29 Ga0068855_100047490 3300005563 Bacteria 5072
30 Ga0068855_100268295 3300005563 Bacteria 1899
31 Ga0070664_100004679 3300005564 Bacteria 10982
32 Ga0068857_100040417 3300005577 Bacteria 4135
33 Ga0068854_100187358 3300005578 Bacteria 1620
34 Ga0068856_100061239 3300005614 Bacteria 3717
35 Ga0068864_100063157 3300005618 Bacteria 3209
36 Ga0068863_100000072 3300005841 Bacteria 113996
37 Ga0068863_100025521 3300005841 Bacteria 5634
38 Ga0068860_100000247 3300005843 Bacteria 81527
39 Ga0068860_100064468 3300005843 Bacteria 3480
40 Ga0068862_100003121 3300005844 Bacteria 14433
41 Ga0075368_10017066 3300006042 Bacteria 2713
42 Ga0075363_100055320 3300006048 Bacteria 2125
43 Ga0075432_10002671 3300006058 Bacteria 5949
44 Ga0075362_10014458 3300006177 Bacteria 3187
45 Ga0075362_10073506 3300006177 Bacteria 1565
46 Ga0075367_10019168 3300006178 Bacteria 3790
47 Ga0075367_10212370 3300006178 Bacteria 1210
48 Ga0075366_10012632 3300006195 Bacteria 4795
49 Ga0075366_10050918 3300006195 Bacteria 2460
50 Ga0097621_100345345 3300006237 Bacteria 1322
51 Ga0075370_10000056 3300006353 Bacteria 33386
52 Ga0075370_10076229 3300006353 Bacteria 1923
53 Ga0075370_10198543 3300006353 Bacteria 1183
54 Ga0079104_1011592 3300006946 Bacteria 2824
55 Ga0079104_1039172 3300006946 Bacteria 1119
56 Ga0105251_10002779 3300009011 Bacteria 13307
57 Ga0105241_10024478 3300009174 Bacteria 4483
58 Ga0105246_10000124 3300011119 Bacteria 35447
59 Ga0157373_10004044 3300013100 Bacteria 11053
60 Ga0157373_10044794 3300013100 Bacteria 3159
61 Ga0157371_10001205 3300013102 Bacteria 27626
62 Ga0157371_10224112 3300013102 Bacteria 1350
63 Ga0157370_10041998 3300013104 Bacteria 4408
64 Ga0157369_10001195 3300013105 Bacteria 32360
65 Ga0157372_10003911 3300013307 Bacteria 16008
66 Ga0157372_10492974 3300013307 Bacteria 1429
67 Ga0157375_10754407 3300013308 Bacteria 1124
68 Ga0157380_10212592 3300014326 Bacteria 1724
69 Ga0209050_1000265 3300025298 Bacteria 112618
70 Ga0207713_1003924 3300025735 Bacteria 9897
71 Ga0207705_10002842 3300025909 Bacteria 13242
72 Ga0207705_10009626 3300025909 Bacteria 7027
73 Ga0207705_10049216 3300025909 Bacteria 3034
74 Ga0207707_10047647 3300025912 Bacteria 3732
75 Ga0207657_10000104 3300025919 Bacteria 81832
76 Ga0207657_10008267 3300025919 Bacteria 10592
77 Ga0207657_10035436 3300025919 Bacteria 4475
78 Ga0207657_10219040 3300025919 Bacteria 1525
79 Ga0207657_10296521 3300025919 Bacteria 1281
80 Ga0207649_10017293 3300025920 Bacteria 4087
81 Ga0207652_10015345 3300025921 Bacteria 6220
82 Ga0207652_10042888 3300025921 Bacteria 3852
83 Ga0207652_10057290 3300025921 Bacteria 3355
84 Ga0207681_10002809 3300025923 Bacteria 11019
85 Ga0207681_10548478 3300025923 Bacteria 951
86 Ga0207650_10108105 3300025925 Bacteria 2149
87 Ga0207644_10007180 3300025931 Bacteria 7252
88 Ga0207690_10003145 3300025932 Bacteria 9908
89 Ga0207690_10054689 3300025932 Bacteria 2685
90 Ga0207706_10001100 3300025933 Bacteria 27513
91 Ga0207706_10010096 3300025933 Bacteria 8647
92 Ga0207661_10173419 3300025944 Bacteria 1879
93 Ga0207679_10008953 3300025945 Bacteria 6394
94 Ga0207667_10010149 3300025949 Bacteria 11030
95 Ga0207667_10016469 3300025949 Bacteria 8353
96 Ga0207668_10008505 3300025972 Bacteria 6121
97 Ga0207640_10184639 3300025981 Bacteria 1567
98 Ga0207658_10002889 3300025986 Bacteria 12318
99 Ga0207658_10012111 3300025986 Bacteria 5882
100 Ga0207639_10009440 3300026041 Bacteria 6732
101 Ga0207639_10402129 3300026041 Bacteria 1234
102 Ga0207678_10529820 3300026067 Bacteria 1029
103 Ga0207702_10083351 3300026078 Bacteria 2782
104 Ga0207641_10000084 3300026088 Bacteria 133555
105 Ga0207641_10014671 3300026088 Bacteria 6424
106 Ga0207676_10067368 3300026095 Bacteria 2859
107 Ga0207683_10102877 3300026121 Bacteria 2551
108 Ga0209281_1033117 3300027111 Bacteria 910
109 Ga0209813_10006774 3300027866 Bacteria 2839
110 Ga0268266_10001483 3300028379 Bacteria 27834
111 Ga0268265_10002095 3300028380 Bacteria 15531
112 Ga0268265_10023201 3300028380 Bacteria 4371
113 Ga0268265_10408580 3300028380 Bacteria 1257
114 Ga0268264_10000253 3300028381 Bacteria 98587
115 Ga0268264_10012697 3300028381 Bacteria 6932
116 Ga0268264_10037380 3300028381 Bacteria 4003
117 Ga0265327_10065845 3300031251 Bacteria 1831
118 Ga0307410_10435862 3300031852 Bacteria 1066
119 Ga0307412_10335950 3300031911 Bacteria 1207
120 Ga0307414_10068836 3300032004 Bacteria 2542
121 Ga0307414_10216120 3300032004 Bacteria 1571
122 Ga0307415_100219523 3300032126 Bacteria 1523
123 Ga0373948_0005945 3300034817 Bacteria 1998
124 Ga0451853_2899291 3300041512 Bacteria 1655
125 Ga0439462_0017552 3300042015 Bacteria 1854
126 Ga0495638_0279660 3300046460 Bacteria 907
127 Ga0495639_0260240 3300046475 Bacteria 859
128 Ga0495596_0000823 3300046500 Bacteria 18771
129 Ga0495606_0277682 3300046507 Bacteria 917
130 Ga0495610_0014531 3300046512 Bacteria 4620
131 Ga0495643_0112514 3300046522 Bacteria 1382
132 Ga0495598_0007464 3300046537 Bacteria 2511
133 Ga0495609_0020513 3300046538 Bacteria 3054
134 Ga0495668_0211409 3300046616 Bacteria 1062
135 Ga0495625_0035489 3300046660 Bacteria 3675
136 Ga0495625_0072457 3300046660 Bacteria 2416
137 Ga0495626_0001039 3300048091 Bacteria 23761
138 Ga0496101_0507556 3300048904 Bacteria 953
139 Ga0496102_0111913 3300048905 Bacteria 2546
140 Ga0496104_0131800 3300048907 Bacteria 2401
141 Ga0496105_0030218 3300048908 Bacteria 4440
142 Ga0496116_0000017 3300048919 Bacteria 554463
143 Ga0496117_0031279 3300048920 Bacteria 4067
144 Ga0496117_0051784 3300048920 Bacteria 2899
145 Ga0496117_0160056 3300048920 Bacteria 1320
146 Ga0496118_0013499 3300048921 Bacteria 7719
147 Ga0496118_0043780 3300048921 Bacteria 3514
148 Ga0496118_0076649 3300048921 Bacteria 2376
149 Ga0496118_0173343 3300048921 Bacteria 1314
150 Ga0496119_0046494 3300048922 Bacteria 2710
151 Ga0496119_0065895 3300048922 Bacteria 2143
152 Ga0496121_0000136 3300048924 Bacteria 165350
153 Ga0496121_0007195 3300048924 Bacteria 13479
154 Ga0496122_0002119 3300048925 Bacteria 29307
155 Ga0496122_0092030 3300048925 Bacteria 2063
156 Ga0496123_0012971 3300048926 Bacteria 7042
157 Ga0496124_0002485 3300048927 Bacteria 24031
158 Ga0496124_0013962 3300048927 Bacteria 7800
159 Ga0496124_0035056 3300048927 Bacteria 4394
160 Ga0496125_0032457 3300048928 Bacteria 4638
161 Ga0496125_0035895 3300048928 Bacteria 4338
162 Ga0496125_0096315 3300048928 Bacteria 2197
163 Ga0496126_0000359 3300048929 Bacteria 94946
164 Ga0496126_0042176 3300048929 Bacteria 4215
165 Ga0501036_0236320 3300049572 Bacteria 1533
166 Ga0501047_0175582 3300049581 Bacteria 2010
167 Ga0501249_030407 3300049679 Bacteria 1202
168 Ga0501044_0000346 3300049823 Bacteria 58137
169 Ga0501044_0528434 3300049823 Bacteria 1079
170 nmdc:mga03683_6917_c1 3300050489 Bacteria 3910
171 nmdc:mga00v17_16141_c1 3300050491 Bacteria 4207
172 nmdc:mga0yw44_9689_c1 3300050492 Bacteria 4889
173 nmdc:mga0k408_200488_c1 3300050493 Bacteria 1191
174 nmdc:mga0k408_2554_c1 3300050493 Bacteria 9672
175 nmdc:mga0k408_30283_c2 3300050493 Bacteria 1924
176 nmdc:mga0k408_38356_c2 3300050493 Bacteria 1242
177 nmdc:mga0k408_83785_c1 3300050493 Bacteria 1870
178 nmdc:mga06z11_1105_c1 3300050494 Bacteria 9850
179 nmdc:mga04h51_4402_c1 3300050495 Bacteria 3503
180 nmdc:mga07m45_246350_c1 3300050496 Bacteria 1040
181 nmdc:mga07m45_3_c1 3300050496 Bacteria 421414
182 nmdc:mga07m45_5_c2 3300050496 Bacteria 297012
183 nmdc:mga07m45_64550_c1 3300050496 Bacteria 2078
184 nmdc:mga08y16_581618_c1 3300050511 Bacteria 1130
185 nmdc:mga0sz30_878_c1 3300050516 Bacteria 10826
186 Ga0500643_016597 3300053087 Bacteria 2490
187 Ga0500647_0048054 3300053091 Bacteria 2052
188 Ga0500566_0083892 3300053094 Bacteria 1769
189 Ga0500562_129299 3300053108 Bacteria 688
190 Ga0500607_000048 3300053121 Bacteria 82363
191 Ga0500607_002276 3300053121 Bacteria 15819
192 Ga0500608_002538 3300053122 Bacteria 6662
193 Ga0500618_022984 3300053125 Bacteria 1512
194 Ga0500559_0000897 3300053136 Bacteria 18990
195 Ga0500559_0007620 3300053136 Bacteria 4779
196 Ga0500564_001663 3300053138 Bacteria 7826
197 Ga0500573_0049741 3300053140 Bacteria 2412
198 Ga0500590_023379 3300053148 Bacteria 3209
199 Ga0500604_0024515 3300053151 Bacteria 1728
200 Ga0500622_0000491 3300053156 Bacteria 36964
201 Ga0500630_102432 3300053159 Bacteria 1302
202 Ga0500637_0003927 3300053178 Bacteria 6948
203 Ga0500625_000010 3300053729 Bacteria 154401
204 Ga0500645_003123 3300053730 Bacteria 6905
205 Ga0500645_010401 3300053730 Bacteria 3079
206 2511127161 2510917021 Bacteria 5705459
207 2643949469 2643221588 Bacteria 3692460
208 2739649780 2739367664 Bacteria 4114334
209 2740028253 2739367865 Bacteria 4114482
210 2819550821 2818991438 Bacteria 5793701
211 Ga0065704_10188609
212 Ga0055530_10004193
213 Ga0070658_10015382
214 Ga0070658_10030627
215 Ga0070658_10071573
216 Ga0070666_10293589
217 Ga0070682_100118656
218 Ga0070660_100045771
219 Ga0070660_100069843
220 Ga0070661_100013077
221 Ga0070668_100024966
222 Ga0070669_100012362
223 Ga0070669_100570433
224 Ga0070671_100011348
225 Ga0070667_100101332
226 Ga0070662_100003070
227 Ga0070662_100023257
228 Ga0070681_10051813
229 Ga0070679_100019861
230 Ga0070679_100087303
231 Ga0070679_100921425
232 Ga0070684_100127835
233 Ga0068853_100022557
234 Ga0068853_100426727
235 Ga0068853_100440905
236 Ga0070665_100000558
237 Ga0070665_100006055
238 Ga0068855_100037095
239 Ga0068855_100047490
240 Ga0068855_100268295
241 Ga0070664_100004679
242 Ga0068857_100040417
243 Ga0068854_100187358
244 Ga0068856_100061239
245 Ga0068864_100063157
246 Ga0068863_100000072
247 Ga0068863_100025521
248 Ga0068860_100000247
249 Ga0068860_100064468
250 Ga0068862_100003121
251 Ga0075368_10017066
252 Ga0075363_100055320
253 Ga0075432_10002671
254 Ga0075362_10014458
255 Ga0075362_10073506
256 Ga0075367_10019168
257 Ga0075367_10212370
258 Ga0075366_10012632
259 Ga0075366_10050918
260 Ga0097621_100345345
261 Ga0075370_10000056
262 Ga0075370_10076229
263 Ga0075370_10198543
264 Ga0079104_1011592
265 Ga0079104_1039172
266 Ga0105251_10002779
267 Ga0105241_10024478
268 Ga0105246_10000124
269 Ga0157373_10004044
270 Ga0157373_10044794
271 Ga0157371_10001205
272 Ga0157371_10224112
273 Ga0157370_10041998
274 Ga0157369_10001195
275 Ga0157372_10003911
276 Ga0157372_10492974
277 Ga0157375_10754407
278 Ga0157380_10212592
279 Ga0209050_1000265
280 Ga0207713_1003924
281 Ga0207705_10002842
282 Ga0207705_10009626
283 Ga0207705_10049216
284 Ga0207707_10047647
285 Ga0207657_10000104
286 Ga0207657_10008267
287 Ga0207657_10035436
288 Ga0207657_10219040
289 Ga0207657_10296521
290 Ga0207649_10017293
291 Ga0207652_10015345
292 Ga0207652_10042888
293 Ga0207652_10057290
294 Ga0207681_10002809
295 Ga0207681_10548478
296 Ga0207650_10108105
297 Ga0207644_10007180
298 Ga0207690_10003145
299 Ga0207690_10054689
300 Ga0207706_10001100
301 Ga0207706_10010096
302 Ga0207661_10173419
303 Ga0207679_10008953
304 Ga0207667_10010149
305 Ga0207667_10016469
306 Ga0207668_10008505
307 Ga0207640_10184639
308 Ga0207658_10002889
309 Ga0207658_10012111
310 Ga0207639_10009440
311 Ga0207639_10402129
312 Ga0207678_10529820
313 Ga0207702_10083351
314 Ga0207641_10000084
315 Ga0207641_10014671
316 Ga0207676_10067368
317 Ga0207683_10102877
318 Ga0209281_1033117
319 Ga0209813_10006774
320 Ga0268266_10001483
321 Ga0268265_10002095
322 Ga0268265_10023201
323 Ga0268265_10408580
324 Ga0268264_10000253
325 Ga0268264_10012697
326 Ga0268264_10037380
327 Ga0265327_10065845
328 Ga0307410_10435862
329 Ga0307412_10335950
330 Ga0307414_10068836
331 Ga0307414_10216120
332 Ga0307415_100219523
333 Ga0373948_0005945
334 Ga0451853_2899291
335 Ga0439462_0017552
336 Ga0495638_0279660
337 Ga0495639_0260240
338 Ga0495596_0000823
339 Ga0495606_0277682
340 Ga0495610_0014531
341 Ga0495643_0112514
342 Ga0495598_0007464
343 Ga0495609_0020513
344 Ga0495668_0211409
345 Ga0495625_0035489
346 Ga0495625_0072457
347 Ga0495626_0001039
348 Ga0496101_0507556
349 Ga0496102_0111913
350 Ga0496104_0131800
351 Ga0496105_0030218
352 Ga0496116_0000017
353 Ga0496117_0031279
354 Ga0496117_0051784
355 Ga0496117_0160056
356 Ga0496118_0013499
357 Ga0496118_0043780
358 Ga0496118_0076649
359 Ga0496118_0173343
360 Ga0496119_0046494
361 Ga0496119_0065895
362 Ga0496121_0000136
363 Ga0496121_0007195
364 Ga0496122_0002119
365 Ga0496122_0092030
366 Ga0496123_0012971
367 Ga0496124_0002485
368 Ga0496124_0013962
369 Ga0496124_0035056
370 Ga0496125_0032457
371 Ga0496125_0035895
372 Ga0496125_0096315
373 Ga0496126_0000359
374 Ga0496126_0042176
375 Ga0501036_0236320
376 Ga0501047_0175582
377 Ga0501249_030407
378 Ga0501044_0000346
379 Ga0501044_0528434
380 nmdc:mga03683_6917_c1
381 nmdc:mga00v17_16141_c1
382 nmdc:mga0yw44_9689_c1
383 nmdc:mga0k408_200488_c1
384 nmdc:mga0k408_2554_c1
385 nmdc:mga0k408_30283_c2
386 nmdc:mga0k408_38356_c2
387 nmdc:mga0k408_83785_c1
388 nmdc:mga06z11_1105_c1
389 nmdc:mga04h51_4402_c1
390 nmdc:mga07m45_246350_c1
391 nmdc:mga07m45_3_c1
392 nmdc:mga07m45_5_c2
393 nmdc:mga07m45_64550_c1
394 nmdc:mga08y16_581618_c1
395 nmdc:mga0sz30_878_c1
396 Ga0500643_016597
397 Ga0500647_0048054
398 Ga0500566_0083892
399 Ga0500562_129299
400 Ga0500607_000048
401 Ga0500607_002276
402 Ga0500608_002538
403 Ga0500618_022984
404 Ga0500559_0000897
405 Ga0500559_0007620
406 Ga0500564_001663
407 Ga0500573_0049741
408 Ga0500590_023379
409 Ga0500604_0024515
410 Ga0500622_0000491
411 Ga0500630_102432
412 Ga0500637_0003927
413 Ga0500625_000010
414 Ga0500645_003123
415 Ga0500645_010401
416 2511127161
417 2643949469
418 2739649780
419 2740028253
420 2819550821

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05013

FGase

N-formylglutamate amidohydrolase

15

217

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2odf-assembly3.cif.gz_C the crystal structure of gene product atu2144 from agrobacterium tumefaciens 0.9162 2 238
2odf-assembly2.cif.gz_B the crystal structure of gene product atu2144 from agrobacterium tumefaciens 0.9116 2 240
2odf-assembly2.cif.gz_B the crystal structure of gene product atu2144 from agrobacterium tumefaciens 0.9044 2 240
2odf-assembly3.cif.gz_C the crystal structure of gene product atu2144 from agrobacterium tumefaciens 0.9016 2 238
4zb7-assembly2.cif.gz_C phanerochaete chrysosporium ure2p6 in apo form. 0.76 152 181
ID Description Score Start End Superfamily
2odfB01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn-dependent exopeptidases 0.9122 6 240 3.40.630.40
2odfB01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn-dependent exopeptidases 0.8939 6 240 3.40.630.40
4ke3D01 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.7412 154 182 3.40.30.10
af_F6RWR5_3_78_3.40.30.10 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.7344 154 184 3.40.30.10
6ghbA00 Alpha Beta;3-Layer(aba) Sandwich;Glutaredoxin;Glutaredoxin 0.7327 154 186 3.40.30.10
ID Description Score Start End GO Terms
AF-A0A6H2DI15-F1-model_v4 N-formylglutamate amidohydrolase 0.9789 5 240 GO:0016787
AF-A0A2M7HFH6-F1-model_v4 deleted 0.9761 4 240
AF-A0A258XK62-F1-model_v4 N-formylglutamate amidohydrolase 0.9714 5 203 GO:0016787
AF-A0A2N3B3B5-F1-model_v4 N-formylglutamate amidohydrolase 0.9691 3 240 GO:0016787
AF-A0A848SPX0-F1-model_v4 N-formylglutamate amidohydrolase 0.9689 68 239 GO:0016787

Map