F319044

General Info

Members Datasets Scaffolds Average Seq Length
209 154 197 360

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10085804|Ga0105248_100858043
Length 389
Sequence LEDLVVGMSLFDIYRNLDVFITGHTGFKGAWLALWLSELGARVHGFSLDPPTRPNLFDEAHVRERLASHHLGDVRDYDSLANAIRSVKPEIVLHLAAQALVRKSYHHPRETYETNVMGTVNLLESIRGVNSVRVCEVVTSDKCYDNKEWVYPYRESEPMGGADPYSNSKGCAELVVSAYRRSFFPPENIKSHGVSLSSARAGNVIGGGDWAEDRIIPDCIRALSKKESIPVRNPNAIRPWQHVLEPISGYLHLVAMQLSRPVEFADAWNFGPTTTGHLTVQEVVEEVIRCWGEGKWNVVASAAPAVSARTGSFHEATFLKLDIAKAVSCLCWRPVHTASEAMSETVKWYREQYLQSNRFSAQKMCLEQIQTYTNLAAQRRIAWADGSMK

Samples

Sample ID Description Type Environment
1 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
2 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
3 2818991446 Variovorax sp. 1180 Isolate Unclassified
4 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
5 2885198086 Variovorax sp. 679 Isolate Unclassified
6 2885211737 Variovorax sp. 553 Isolate Unclassified
7 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
8 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
9 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
10 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
11 3007395558 Pseudomonas chlororaphis PCL1601 Isolate Rhizosphere
12 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
13 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
14 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
15 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
16 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
20 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
21 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
22 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
23 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
24 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
25 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
26 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
27 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
28 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
29 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
30 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
31 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
32 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
33 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
40 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
41 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
42 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
43 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
44 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
45 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
46 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
47 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
48 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
56 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
57 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
58 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
59 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
60 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
61 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
62 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
63 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
64 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
65 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
66 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
67 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
68 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
69 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
70 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
71 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
72 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
95 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
96 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
97 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
98 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
99 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
100 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
101 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
102 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
103 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
104 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
105 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
106 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
107 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
108 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
109 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
110 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
111 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
112 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
113 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
114 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
115 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
116 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
117 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
118 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
119 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
120 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
121 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
122 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
123 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
124 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
125 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
126 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
127 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
128 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
129 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
130 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
131 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
132 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
133 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
134 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
135 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
136 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
137 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
138 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
139 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
140 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
141 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
142 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
143 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
144 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
145 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
146 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
147 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
148 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
149 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
150 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
151 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
152 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
153 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
154 8057132660 Paracoccus rhizosphaerae LMG 21293 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.3
Metatranscriptomes 0.96
Isolates 5.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.18
Nodule 0
Rhizoplane 1.91
Rhizosphere 80.38
Stem 0
Stem Tuber 0
Unclassified 10.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10000054 3300001989 Bacteria 31944
2 JGI24739J22299_10010873 3300001989 Bacteria 3368
3 JGI25165J46597_1000013 3300003214 Bacteria 402100
4 rootH2_10015599 3300003320 Bacteria 13469
5 rootH2_10058130 3300003320 Bacteria 3342
6 rootH2_10101240 3300003320 Bacteria 8978
7 rootH2_10151598 3300003320 Bacteria 3586
8 rootH1_10016403 3300003323 Bacteria 11335
9 Ga0055540_1000622 3300003792 Bacteria 25228
10 Ga0070658_10008693 3300005327 Bacteria 8156
11 Ga0070658_10116695 3300005327 Bacteria 2215
12 Ga0070658_10159079 3300005327 Bacteria 1894
13 Ga0070683_100044095 3300005329 Bacteria 4111
14 Ga0070680_100000454 3300005336 Bacteria 27845
15 Ga0068868_100011780 3300005338 Bacteria 6374
16 Ga0070660_100012524 3300005339 Bacteria 6059
17 Ga0070691_10112710 3300005341 Bacteria 1362
18 Ga0070661_100125224 3300005344 Unclassified 1927
19 Ga0070659_100004612 3300005366 Bacteria 9844
20 Ga0070659_100010149 3300005366 Bacteria 6930
21 Ga0070713_100002079 3300005436 Bacteria 12939
22 Ga0070711_100000653 3300005439 Bacteria 18090
23 Ga0070681_10009157 3300005458 Bacteria 9728
24 Ga0070706_100000164 3300005467 Bacteria 84577
25 Ga0070707_100000658 3300005468 Bacteria 34404
26 Ga0070679_100096561 3300005530 Bacteria 2943
27 Ga0070679_100098738 3300005530 Bacteria 2907
28 Ga0070684_100055127 3300005535 Bacteria 3464
29 Ga0068853_100063672 3300005539 Bacteria 3194
30 Ga0070704_100029675 3300005549 Bacteria 3655
31 Ga0068855_100000984 3300005563 Bacteria 35494
32 Ga0068855_100006146 3300005563 Bacteria 14639
33 Ga0068855_100010501 3300005563 Bacteria 11170
34 Ga0068855_100019530 3300005563 Bacteria 8141
35 Ga0068855_100032632 3300005563 Bacteria 6217
36 Ga0068855_100066070 3300005563 Bacteria 4216
37 Ga0068854_100014452 3300005578 Bacteria 5205
38 Ga0068856_100041878 3300005614 Bacteria 4503
39 Ga0068852_100029646 3300005616 Unclassified 4498
40 Ga0068852_100039003 3300005616 Bacteria 3996
41 Ga0068859_100002746 3300005617 Bacteria 17844
42 Ga0068851_10012200 3300005834 Bacteria 4047
43 Ga0068858_100289420 3300005842 Bacteria 1561
44 Ga0081540_1008950 3300005983 Bacteria 6933
45 Ga0070717_10018241 3300006028 Bacteria 5476
46 Ga0075364_10009855 3300006051 Bacteria 5747
47 Ga0075366_10000259 3300006195 Bacteria 23293
48 Ga0075428_100049574 3300006844 Bacteria 4607
49 Ga0075428_100265462 3300006844 Bacteria 1848
50 Ga0075431_100024843 3300006847 Bacteria 6143
51 Ga0097620_100002746 3300006931 Bacteria 17844
52 Ga0099794_10036717 3300007265 Bacteria 2318
53 Ga0105240_10000449 3300009093 Bacteria 75827
54 Ga0105240_10008069 3300009093 Bacteria 15135
55 Ga0105240_10009006 3300009093 Bacteria 14182
56 Ga0105240_10074197 3300009093 Bacteria 4199
57 Ga0105240_10317768 3300009093 Bacteria 1776
58 Ga0111539_10429407 3300009094 Bacteria 1538
59 Ga0105245_10025879 3300009098 Bacteria 5161
60 Ga0105241_10015449 3300009174 Bacteria 5592
61 Ga0105241_10016239 3300009174 Bacteria 5456
62 Ga0105242_10161960 3300009176 Bacteria 1959
63 Ga0105248_10030428 3300009177 Bacteria 6027
64 Ga0105248_10085804 3300009177 Bacteria 3542
65 Ga0105237_10365202 3300009545 Bacteria 1448
66 Ga0105238_10000791 3300009551 Bacteria 32803
67 Ga0105238_10003004 3300009551 Bacteria 16850
68 Ga0105238_10028868 3300009551 Bacteria 5650
69 Ga0105239_10002308 3300010375 Bacteria 24354
70 Ga0105239_10017168 3300010375 Bacteria 7999
71 Ga0157373_10087464 3300013100 Bacteria 2196
72 Ga0157371_10002969 3300013102 Bacteria 15746
73 Ga0157370_10014211 3300013104 Bacteria 8159
74 Ga0157369_10011588 3300013105 Bacteria 10010
75 Ga0157374_10002762 3300013296 Bacteria 14730
76 Ga0157374_10010674 3300013296 Bacteria 7911
77 Ga0157374_10044567 3300013296 Bacteria 4100
78 Ga0157378_10186157 3300013297 Bacteria 1956
79 Ga0163162_10466083 3300013306 Bacteria 1395
80 Ga0157372_10007908 3300013307 Bacteria 11302
81 Ga0157372_10085719 3300013307 Bacteria 3573
82 Ga0157375_10116470 3300013308 Unclassified 2777
83 Ga0183362_10005 3300015683 Bacteria 437616
84 Ga0163161_10030363 3300017792 Bacteria 3846
85 Ga0206351_10274222 3300020077 Bacteria 1508
86 Ga0209233_1000013 3300025261 Bacteria 1013785
87 Ga0209676_1001174 3300025292 Bacteria 28334
88 Ga0209051_1000924 3300025303 Bacteria 29157
89 Ga0207656_10101767 3300025321 Bacteria 1318
90 Ga0207705_10043772 3300025909 Bacteria 3216
91 Ga0207705_10175738 3300025909 Bacteria 1614
92 Ga0207684_10000452 3300025910 Bacteria 53994
93 Ga0207695_10000096 3300025913 Bacteria 265048
94 Ga0207695_10000565 3300025913 Bacteria 75825
95 Ga0207695_10062625 3300025913 Bacteria 3839
96 Ga0207671_10291450 3300025914 Bacteria 1288
97 Ga0207663_10000496 3300025916 Bacteria 17189
98 Ga0207660_10019015 3300025917 Bacteria 4589
99 Ga0207657_10011562 3300025919 Bacteria 8757
100 Ga0207657_10034178 3300025919 Bacteria 4575
101 Ga0207649_10076741 3300025920 Unclassified 2151
102 Ga0207652_10003777 3300025921 Bacteria 12402
103 Ga0207646_10002163 3300025922 Bacteria 23479
104 Ga0207694_10001702 3300025924 Bacteria 18400
105 Ga0207687_10016793 3300025927 Unclassified 4811
106 Ga0207700_10027416 3300025928 Bacteria 3989
107 Ga0207690_10000131 3300025932 Bacteria 60630
108 Ga0207690_10027805 3300025932 Bacteria 3577
109 Ga0207667_10017349 3300025949 Bacteria 8105
110 Ga0207667_10045110 3300025949 Bacteria 4669
111 Ga0207667_10093008 3300025949 Bacteria 3114
112 Ga0207667_10115384 3300025949 Bacteria 2768
113 Ga0207667_10130082 3300025949 Bacteria 2593
114 Ga0207667_10160058 3300025949 Bacteria 2316
115 Ga0207667_10255993 3300025949 Bacteria 1790
116 Ga0207677_10018152 3300026023 Unclassified 4216
117 Ga0207678_10156856 3300026067 Bacteria 1943
118 Ga0207674_10278018 3300026116 Bacteria 1622
119 Ga0207674_10457429 3300026116 Bacteria 1233
120 Ga0207698_10072782 3300026142 Unclassified 2733
121 Ga0207698_10162960 3300026142 Bacteria 1953
122 Ga0268266_10007204 3300028379 Bacteria 10065
123 Ga0265319_1003176 3300028563 Bacteria 8653
124 Ga0265318_10005238 3300028577 Bacteria 6108
125 Ga0307515_10011414 3300028794 Bacteria 16861
126 Ga0307515_10126470 3300028794 Bacteria 2851
127 Ga0265760_10004032 3300031090 Bacteria 4234
128 Ga0265320_10007529 3300031240 Bacteria 6753
129 Ga0265339_10125971 3300031249 Bacteria 1313
130 Ga0265327_10032583 3300031251 Bacteria 2915
131 Ga0265316_10088265 3300031344 Bacteria 2368
132 Ga0307408_100030019 3300031548 Bacteria 3772
133 Ga0307410_10051725 3300031852 Bacteria 2770
134 Ga0307406_10025314 3300031901 Bacteria 3552
135 Ga0307409_100042497 3300031995 Bacteria 3405
136 Ga0307416_100018000 3300032002 Bacteria 4963
137 Ga0307411_10005140 3300032005 Bacteria 6390
138 Ga0307415_100226618 3300032126 Bacteria 1502
139 Ga0316583_10000480 3300032133 Bacteria 11873
140 Ga0373953_0012425 3300035117 Bacteria 3016
141 Ga0373957_0026551 3300035120 Bacteria 2096
142 Ga0373955_0014028 3300035172 Bacteria 3890
143 Ga0373937_0009910 3300036401 Bacteria 8307
144 Ga0373925_0049805 3300037068 Bacteria 3123
145 Ga0400484_29014 3300038725 Unclassified 1924
146 Ga0400490_21657 3300038726 Bacteria 7849
147 Ga0400483_078897 3300039062 Unclassified 1745
148 Ga0436360_1107336 3300039438 Bacteria 3553
149 Ga0436361_0606170 3300039447 Bacteria 2274
150 Ga0436362_0687219 3300039453 Bacteria 1910
151 Ga0439463_000134 3300042016 Bacteria 18645
152 Ga0439464_0002454 3300042439 Bacteria 4560
153 Ga0451577_0393409 3300042876 Bacteria 1258
154 Ga0453683_0000382 3300044673 Bacteria 52943
155 Ga0453683_0001464 3300044673 Bacteria 20324
156 Ga0453683_0010890 3300044673 Bacteria 6013
157 Ga0453684_0000264 3300044712 Bacteria 225672
158 Ga0453684_0029982 3300044712 Bacteria 7701
159 Ga0453684_0200451 3300044712 Bacteria 2327
160 Ga0451576_0000691 3300045051 Bacteria 68432
161 Ga0451576_0067543 3300045051 Bacteria 3722
162 Ga0451576_0096225 3300045051 Bacteria 3080
163 Ga0495627_015082 3300046453 Bacteria 2675
164 Ga0495650_0000007 3300046471 Bacteria 718072
165 Ga0495650_0055383 3300046471 Bacteria 1614
166 Ga0495606_0014696 3300046507 Bacteria 6087
167 Ga0495620_0001167 3300046515 Bacteria 16094
168 Ga0495637_0002082 3300046520 Bacteria 11257
169 Ga0495637_0004602 3300046520 Bacteria 7127
170 Ga0495648_0006102 3300046524 Bacteria 9880
171 Ga0495654_0000054 3300046530 Bacteria 144303
172 Ga0495625_0003907 3300046660 Bacteria 14363
173 Ga0495625_0020913 3300046660 Bacteria 5044
174 Ga0495625_0251515 3300046660 Bacteria 1147
175 Ga0495599_0056900 3300046678 Unclassified 2447
176 Ga0495671_0008172 3300046692 Bacteria 5904
177 Ga0495589_0019750 3300046794 Bacteria 3449
178 Ga0496114_0343259 3300048917 Bacteria 1320
179 Ga0496115_0001904 3300048918 Bacteria 14908
180 Ga0496115_0027039 3300048918 Bacteria 4484
181 Ga0496118_0015795 3300048921 Bacteria 6964
182 Ga0496121_0085981 3300048924 Bacteria 2473
183 Ga0496125_0015028 3300048928 Bacteria 7518
184 Ga0501044_0079640 3300049823 Bacteria 3319
185 nmdc:mga00v17_5621_c1 3300050491 Bacteria 6611
186 nmdc:mga0k408_763_c1 3300050493 Bacteria 10815
187 nmdc:mga05p37_547485_c1 3300050507 Bacteria 1318
188 nmdc:mga0qj67_67681_c1 3300050509 Archaea 2845
189 nmdc:mga06r32_10375_c1 3300050510 Bacteria 8404
190 nmdc:mga06r32_5719_c1 3300050510 Bacteria 11198
191 nmdc:mga06r32_94952_c1 3300050510 Bacteria 2918
192 Ga0500556_0000755 3300053104 Bacteria 19303
193 Ga0500607_000706 3300053121 Bacteria 32099
194 Ga0500616_0067288 3300053153 Bacteria 1837
195 Ga0500627_0002950 3300053158 Bacteria 5161
196 Ga0500627_0029225 3300053158 Bacteria 2297
197 Ga0500645_000761 3300053730 Bacteria 19659

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048917 Ga0496114_0343259 Ga0496114_0343259_89_991 286
2 3300013102 Ga0157371_10002969 Ga0157371_1000296911 334
3 3300044673 Ga0453683_0010890 Ga0453683_0010890_3747_4796 338
4 3300044712 Ga0453684_0029982 Ga0453684_0029982_1357_2406 338
5 3300032133 Ga0316583_10000480 Ga0316583_100004803 339
6 3300046520 Ga0495637_0004602 Ga0495637_0004602_2144_3229 339
7 3300046660 Ga0495625_0251515 Ga0495625_0251515_28_1113 339
8 3300031548 Ga0307408_100030019 Ga0307408_1000300193 341
9 3300031852 Ga0307410_10051725 Ga0307410_100517253 341
10 3300032005 Ga0307411_10005140 Ga0307411_100051403 341
11 3300053153 Ga0500616_0067288 Ga0500616_0067288_619_1680 341
12 iso_pu_bacteria 2837678835 2837682198 341
13 3300005439 Ga0070711_100000653 Ga0070711_10000065317 342
14 3300025916 Ga0207663_10000496 Ga0207663_1000049615 342
15 3300005563 Ga0068855_100019530 Ga0068855_1000195302 343
16 3300025949 Ga0207667_10255993 Ga0207667_102559932 343
17 3300048918 Ga0496115_0027039 Ga0496115_0027039_2208_3245 343
18 3300038726 Ga0400490_21657 Ga0400490_21657_223_1305 345
19 3300042439 Ga0439464_0002454 Ga0439464_0002454_1604_2671 345
20 3300009093 Ga0105240_10317768 Ga0105240_103177682 347
21 3300015683 Ga0183362_10005 Ga0183362_1000566 347
22 3300025949 Ga0207667_10160058 Ga0207667_101600582 347
23 3300044673 Ga0453683_0001464 Ga0453683_0001464_8131_9180 347
24 3300045051 Ga0451576_0096225 Ga0451576_0096225_208_1257 347
25 3300037068 Ga0373925_0049805 Ga0373925_0049805_1901_2959 348
26 3300039447 Ga0436361_0606170 Ga0436361_0606170_16_1092 348
27 3300039453 Ga0436362_0687219 Ga0436362_0687219_181_1257 348
28 3300001989 JGI24739J22299_10010873 JGI24739J22299_100108733 349
29 3300003320 rootH2_10058130 rootH2_100581303 349
30 3300003323 rootH1_10016403 rootH1_100164039 349
31 3300003792 Ga0055540_1000622 Ga0055540_10006224 349
32 3300005327 Ga0070658_10116695 Ga0070658_101166952 349
33 3300005336 Ga0070680_100000454 Ga0070680_1000004548 349
34 3300005339 Ga0070660_100012524 Ga0070660_1000125244 349
35 3300005366 Ga0070659_100004612 Ga0070659_1000046124 349
36 3300005366 Ga0070659_100010149 Ga0070659_1000101494 349
37 3300005458 Ga0070681_10009157 Ga0070681_100091573 349
38 3300005530 Ga0070679_100098738 Ga0070679_1000987382 349
39 3300005539 Ga0068853_100063672 Ga0068853_1000636722 349
40 3300005563 Ga0068855_100006146 Ga0068855_10000614614 349
41 3300005834 Ga0068851_10012200 Ga0068851_100122002 349
42 3300009093 Ga0105240_10000449 Ga0105240_1000044932 349
43 3300009551 Ga0105238_10003004 Ga0105238_100030046 349
44 3300025292 Ga0209676_1001174 Ga0209676_100117420 349
45 3300025303 Ga0209051_1000924 Ga0209051_100092421 349
46 3300025321 Ga0207656_10101767 Ga0207656_101017671 349
47 3300025909 Ga0207705_10043772 Ga0207705_100437724 349
48 3300025913 Ga0207695_10000565 Ga0207695_1000056539 349
49 3300025917 Ga0207660_10019015 Ga0207660_100190153 349
50 3300025919 Ga0207657_10011562 Ga0207657_100115626 349
51 3300025919 Ga0207657_10034178 Ga0207657_100341784 349
52 3300025921 Ga0207652_10003777 Ga0207652_1000377712 349
53 3300025932 Ga0207690_10000131 Ga0207690_1000013130 349
54 3300025932 Ga0207690_10027805 Ga0207690_100278053 349
55 3300025949 Ga0207667_10093008 Ga0207667_100930083 349
56 3300026142 Ga0207698_10162960 Ga0207698_101629602 349
57 3300031251 Ga0265327_10032583 Ga0265327_100325832 349
58 3300046453 Ga0495627_015082 Ga0495627_015082_1580_2644 349
59 3300046692 Ga0495671_0008172 Ga0495671_0008172_1095_2159 349
60 3300003320 rootH2_10151598 rootH2_101515982 350
61 3300005842 Ga0068858_100289420 Ga0068858_1002894202 350
62 3300035117 Ga0373953_0012425 Ga0373953_0012425_608_1708 350
63 3300035120 Ga0373957_0026551 Ga0373957_0026551_961_2061 350
64 3300035172 Ga0373955_0014028 Ga0373955_0014028_657_1757 350
65 3300036401 Ga0373937_0009910 Ga0373937_0009910_7020_8120 350
66 3300046471 Ga0495650_0000007 Ga0495650_0000007_320260_321321 350
67 3300046471 Ga0495650_0055383 Ga0495650_0055383_177_1232 350
68 3300046507 Ga0495606_0014696 Ga0495606_0014696_4906_5976 350
69 3300046520 Ga0495637_0002082 Ga0495637_0002082_3098_4159 350
70 3300046524 Ga0495648_0006102 Ga0495648_0006102_7072_8133 350
71 3300046530 Ga0495654_0000054 Ga0495654_0000054_80011_81072 350
72 3300046660 Ga0495625_0003907 Ga0495625_0003907_3267_4328 350
73 3300046660 Ga0495625_0020913 Ga0495625_0020913_1649_2710 350
74 3300046794 Ga0495589_0019750 Ga0495589_0019750_2294_3349 350
75 3300048918 Ga0496115_0001904 Ga0496115_0001904_9426_10520 350
76 3300053104 Ga0500556_0000755 Ga0500556_0000755_1724_2785 350
77 3300053158 Ga0500627_0029225 Ga0500627_0029225_934_1995 350
78 3300053730 Ga0500645_000761 Ga0500645_000761_16287_17348 350
79 iso_pu_bacteria 2571042588 2573038567 350
80 iso_pu_bacteria 2885198086 2885202039 350
81 iso_pu_bacteria 2885211737 2885215251 350
82 iso_pu_bacteria 3007395558 3007400755 350
83 3300003214 JGI25165J46597_1000013 JGI25165J46597_100001319 351
84 3300005436 Ga0070713_100002079 Ga0070713_1000020792 351
85 3300005563 Ga0068855_100032632 Ga0068855_1000326325 351
86 3300006028 Ga0070717_10018241 Ga0070717_100182414 351
87 3300009094 Ga0111539_10429407 Ga0111539_104294072 351
88 3300017792 Ga0163161_10030363 Ga0163161_100303633 351
89 3300025261 Ga0209233_1000013 Ga0209233_1000013274 351
90 3300025928 Ga0207700_10027416 Ga0207700_100274163 351
91 3300025949 Ga0207667_10045110 Ga0207667_100451102 351
92 3300031901 Ga0307406_10025314 Ga0307406_100253143 351
93 3300031995 Ga0307409_100042497 Ga0307409_1000424972 351
94 3300032002 Ga0307416_100018000 Ga0307416_1000180002 351
95 3300032126 Ga0307415_100226618 Ga0307415_1002266182 351
96 3300046515 Ga0495620_0001167 Ga0495620_0001167_11857_12957 351
97 3300048921 Ga0496118_0015795 Ga0496118_0015795_1400_2470 351
98 3300048924 Ga0496121_0085981 Ga0496121_0085981_322_1392 351
99 3300048928 Ga0496125_0015028 Ga0496125_0015028_939_2009 351
100 3300050510 nmdc:mga06r32_5719_c1 nmdc:mga06r32_5719_c1_10014_11102 351
101 3300053121 Ga0500607_000706 Ga0500607_000706_26846_27946 351
102 3300053158 Ga0500627_0002950 Ga0500627_0002950_3469_4569 351
103 iso_pu_bacteria 2818991446 2819602364 351
104 iso_pu_bacteria 2902405164 2902410577 351
105 3300003320 rootH2_10015599 rootH2_1001559912 352
106 3300005467 Ga0070706_100000164 Ga0070706_10000016482 352
107 3300005468 Ga0070707_100000658 Ga0070707_10000065817 352
108 3300025910 Ga0207684_10000452 Ga0207684_100004522 352
109 3300025922 Ga0207646_10002163 Ga0207646_1000216316 352
110 3300028794 Ga0307515_10011414 Ga0307515_1001141413 352
111 3300049823 Ga0501044_0079640 Ga0501044_0079640_1681_2772 352
112 3300005617 Ga0068859_100002746 Ga0068859_1000027467 353
113 3300006051 Ga0075364_10009855 Ga0075364_100098553 353
114 3300006931 Ga0097620_100002746 Ga0097620_1000027467 353
115 3300007265 Ga0099794_10036717 Ga0099794_100367171 353
116 3300026116 Ga0207674_10457429 Ga0207674_104574291 353
117 3300028563 Ga0265319_1003176 Ga0265319_10031762 353
118 3300028577 Ga0265318_10005238 Ga0265318_100052384 353
119 3300031090 Ga0265760_10004032 Ga0265760_100040323 353
120 3300031240 Ga0265320_10007529 Ga0265320_100075295 353
121 3300038725 Ga0400484_29014 Ga0400484_29014_330_1424 353
122 3300039438 Ga0436360_1107336 Ga0436360_1107336_127_1212 353
123 3300042016 Ga0439463_000134 Ga0439463_000134_3306_4379 353
124 3300042876 Ga0451577_0393409 Ga0451577_0393409_75_1229 353
125 3300050491 nmdc:mga00v17_5621_c1 nmdc:mga00v17_5621_c1_1125_2234 353
126 3300005983 Ga0081540_1008950 Ga0081540_10089506 354
127 3300044673 Ga0453683_0000382 Ga0453683_0000382_33552_34643 354
128 3300050509 nmdc:mga0qj67_67681_c1 nmdc:mga0qj67_67681_c1_347_1426 354
129 3300050510 nmdc:mga06r32_94952_c1 nmdc:mga06r32_94952_c1_521_1609 354
130 iso_pu_bacteria 2599185184 2599479152 354
131 iso_pu_bacteria 2928078545 2928082533 354
132 iso_pu_bacteria 2928147474 2928148879 354
133 3300013104 Ga0157370_10014211 Ga0157370_100142112 355
134 3300025914 Ga0207671_10291450 Ga0207671_102914502 355
135 3300050507 nmdc:mga05p37_547485_c1 nmdc:mga05p37_547485_c1_184_1281 355
136 3300006844 Ga0075428_100265462 Ga0075428_1002654622 356
137 3300028794 Ga0307515_10126470 Ga0307515_101264702 356
138 3300031249 Ga0265339_10125971 Ga0265339_101259712 356
139 3300031344 Ga0265316_10088265 Ga0265316_100882651 356
140 iso_pu_bacteria 2919679072 2919680562 356
141 3300005327 Ga0070658_10008693 Ga0070658_100086932 357
142 3300005327 Ga0070658_10159079 Ga0070658_101590792 357
143 3300005329 Ga0070683_100044095 Ga0070683_1000440953 357
144 3300005338 Ga0068868_100011780 Ga0068868_1000117806 357
145 3300005341 Ga0070691_10112710 Ga0070691_101127101 357
146 3300005344 Ga0070661_100125224 Ga0070661_1001252242 357
147 3300005530 Ga0070679_100096561 Ga0070679_1000965612 357
148 3300005535 Ga0070684_100055127 Ga0070684_1000551272 357
149 3300005549 Ga0070704_100029675 Ga0070704_1000296752 357
150 3300005563 Ga0068855_100000984 Ga0068855_10000098430 357
151 3300005563 Ga0068855_100066070 Ga0068855_1000660702 357
152 3300005578 Ga0068854_100014452 Ga0068854_1000144523 357
153 3300005614 Ga0068856_100041878 Ga0068856_1000418784 357
154 3300005616 Ga0068852_100029646 Ga0068852_1000296462 357
155 3300005616 Ga0068852_100039003 Ga0068852_1000390031 357
156 3300009093 Ga0105240_10008069 Ga0105240_100080693 357
157 3300009093 Ga0105240_10009006 Ga0105240_100090063 357
158 3300009093 Ga0105240_10074197 Ga0105240_100741973 357
159 3300009098 Ga0105245_10025879 Ga0105245_100258794 357
160 3300009174 Ga0105241_10015449 Ga0105241_100154492 357
161 3300009174 Ga0105241_10016239 Ga0105241_100162395 357
162 3300009176 Ga0105242_10161960 Ga0105242_101619602 357
163 3300009177 Ga0105248_10030428 Ga0105248_100304285 357
164 3300009177 Ga0105248_10085804 Ga0105248_100858043 357
165 3300009545 Ga0105237_10365202 Ga0105237_103652021 357
166 3300009551 Ga0105238_10000791 Ga0105238_1000079129 357
167 3300009551 Ga0105238_10028868 Ga0105238_100288682 357
168 3300010375 Ga0105239_10002308 Ga0105239_1000230813 357
169 3300010375 Ga0105239_10017168 Ga0105239_100171684 357
170 3300013100 Ga0157373_10087464 Ga0157373_100874641 357
171 3300013105 Ga0157369_10011588 Ga0157369_100115883 357
172 3300013296 Ga0157374_10002762 Ga0157374_1000276213 357
173 3300013296 Ga0157374_10010674 Ga0157374_100106743 357
174 3300013296 Ga0157374_10044567 Ga0157374_100445672 357
175 3300013297 Ga0157378_10186157 Ga0157378_101861572 357
176 3300013306 Ga0163162_10466083 Ga0163162_104660832 357
177 3300013307 Ga0157372_10007908 Ga0157372_100079089 357
178 3300013307 Ga0157372_10085719 Ga0157372_100857192 357
179 3300013308 Ga0157375_10116470 Ga0157375_101164702 357
180 3300020077 Ga0206351_10274222 Ga0206351_102742222 357
181 3300025909 Ga0207705_10175738 Ga0207705_101757381 357
182 3300025913 Ga0207695_10000096 Ga0207695_1000009629 357
183 3300025913 Ga0207695_10062625 Ga0207695_100626252 357
184 3300025920 Ga0207649_10076741 Ga0207649_100767412 357
185 3300025924 Ga0207694_10001702 Ga0207694_1000170216 357
186 3300025927 Ga0207687_10016793 Ga0207687_100167934 357
187 3300025949 Ga0207667_10115384 Ga0207667_101153842 357
188 3300025949 Ga0207667_10130082 Ga0207667_101300822 357
189 3300026023 Ga0207677_10018152 Ga0207677_100181522 357
190 3300026067 Ga0207678_10156856 Ga0207678_101568562 357
191 3300026116 Ga0207674_10278018 Ga0207674_102780182 357
192 3300026142 Ga0207698_10072782 Ga0207698_100727822 357
193 3300028379 Ga0268266_10007204 Ga0268266_100072041 357
194 3300039062 Ga0400483_078897 Ga0400483_078897_600_1673 357
195 3300001989 JGI24739J22299_10000054 JGI24739J22299_100000547 358
196 3300003320 rootH2_10101240 rootH2_101012409 358
197 3300005563 Ga0068855_100010501 Ga0068855_1000105015 358
198 3300006195 Ga0075366_10000259 Ga0075366_1000025918 358
199 3300006844 Ga0075428_100049574 Ga0075428_1000495742 358
200 3300006847 Ga0075431_100024843 Ga0075431_1000248433 358
201 3300025949 Ga0207667_10017349 Ga0207667_100173498 358
202 3300044712 Ga0453684_0000264 Ga0453684_0000264_4938_6017 358
203 3300044712 Ga0453684_0200451 Ga0453684_0200451_120_1259 358
204 3300045051 Ga0451576_0000691 Ga0451576_0000691_62388_63467 358
205 3300045051 Ga0451576_0067543 Ga0451576_0067543_2589_3677 358
206 3300046678 Ga0495599_0056900 Ga0495599_0056900_608_1798 358
207 3300050493 nmdc:mga0k408_763_c1 nmdc:mga0k408_763_c1_2405_3481 358
208 3300050510 nmdc:mga06r32_10375_c1 nmdc:mga06r32_10375_c1_5874_6959 358
209 iso_pu_bacteria 8057132660 8057132878 358

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

19

265

0.89

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

20

188

0.76

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

19

260

0.75

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

20

345

0.7

Structural Annotation

Top 5 Hits

ID Description Score Start End
1rkx-assembly1.cif.gz_D crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9935 6 355
1rkx-assembly1.cif.gz_B crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9907 6 355
1wvg-assembly1.cif.gz_A-2 structure of cdp-d-glucose 4,6-dehydratase from salmonella typhi 0.9873 1 358
1rkx-assembly1.cif.gz_A crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9856 6 355
1rkx-assembly1.cif.gz_C crystal structure at 1.8 angstrom of cdp-d-glucose 4,6-dehydratase from yersinia pseudotuberculosis 0.9831 8 355
ID Description Score Start End Superfamily
1rkxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9951 8 194 3.40.50.720
1wvgA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9843 196 358 3.90.25.10
1wvgA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9782 196 358 3.90.25.10
1rkxC02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9645 196 355 3.90.25.10
1rkxC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9643 8 194 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7V2TWI8-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9973 8 134
AF-A0A0S7ZYQ4-F1-model_v4 CDP-glucose 4,6-dehydratase 0.9955 8 244
AF-A0A522FEJ6-F1-model_v4 CDP-glucose 4,6-dehydratase (EC 4.2.1.45) 0.9938 99 355 GO:0047733
AF-A0A1F8Y5M7-F1-model_v4 CDP-glucose 4,6-dehydratase 0.993 8 355 GO:0006355
AF-L1NW91-F1-model_v4 CDP-glucose 4,6-dehydratase 0.9928 8 356

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Predicted Structure (AlphaFold2)

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