F319042

General Info

Members Datasets Scaffolds Average Seq Length
209 138 418 315

Family's Representative Sequence

Representative Sequence 3300009177|Ga0105248_10006990|Ga0105248_100069904
Length 344
Sequence MTGQSASSLPASLPLRPRLPPGRSLLAADAADLRWLEAAARLATRGVPLSRPNPAVGAILVRDGRLVGRGWTAAGGRPHAEAVALAQAGEAARGATLYVTLEPCAHASERGPACAELTAAAGLARVVVGCGDPDPRTAGRGIARLRDSGTEVDLVASAACALSLAGYLTRARLRRPHVTLKLALSVDGCIALASGESQWITGAPARAHTHALRARADAILVGGGTLRVDTPRLDVRSPARWVLTRGAAPAGWTALPSPEAIADYPDVQYLFVEGGAQTAAAFLAADLVDRLAIYRAPIVIGGGRPGVADLGLTSLAEAHGRWALAERRTLGSDSLEVYERRRAT

Samples

Sample ID Description Type Environment
1 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
28 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
29 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
30 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
33 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
67 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
68 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
69 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
70 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
71 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
72 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
73 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
74 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
75 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
76 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
77 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
78 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
79 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
80 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
81 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
82 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
83 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
84 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
85 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
86 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
87 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
88 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
89 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
92 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
93 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
94 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
95 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
96 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
99 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
100 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
101 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
102 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
103 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
104 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
105 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
106 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
107 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
108 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
109 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
110 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
111 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
113 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
114 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
115 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
116 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
117 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
118 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
119 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
120 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
121 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
122 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
123 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
124 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
125 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
126 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
127 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
128 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
129 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
130 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
131 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
132 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
133 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
134 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
135 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
136 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
137 3000865235 Altericroceibacterium indicum DSM 18604 Isolate Rhizosphere
138 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.78
Metatranscriptomes 0
Isolates 6.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.53
Nodule 0
Rhizoplane 7.66
Rhizosphere 68.42
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105248_10006990 3300009177 Bacteria 12364
2 SwRhRL2b_contig_307682 2162886007 Bacteria 29333
3 SwRhRL2b_contig_652619 2162886007 Bacteria 5923
4 JGI24751J29686_10000251 3300002459 Bacteria 21182
5 Ga0065704_10000192 3300005289 Bacteria 216848
6 Ga0065704_10070419 3300005289 Bacteria 25724
7 Ga0065704_10164637 3300005289 Bacteria 1331
8 Ga0070658_10000449 3300005327 Bacteria 35666
9 Ga0070690_100022177 3300005330 Bacteria 3884
10 Ga0070670_100058451 3300005331 Bacteria 3310
11 Ga0070666_10004056 3300005335 Bacteria 8889
12 Ga0070682_100068182 3300005337 Bacteria 2268
13 Ga0070668_100041974 3300005347 Bacteria 3505
14 Ga0070668_100047071 3300005347 Bacteria 3315
15 Ga0070668_100138742 3300005347 Bacteria 1958
16 Ga0070668_100372739 3300005347 Bacteria 1213
17 Ga0070669_100000473 3300005353 Bacteria 30554
18 Ga0070669_100000799 3300005353 Bacteria 22862
19 Ga0070671_100000003 3300005355 Bacteria 270186
20 Ga0070671_100014802 3300005355 Bacteria 6302
21 Ga0070671_100061596 3300005355 Bacteria 3125
22 Ga0070671_100110503 3300005355 Bacteria 2309
23 Ga0070671_100184501 3300005355 Bacteria 1767
24 Ga0070667_100001211 3300005367 Bacteria 23494
25 Ga0070667_100199679 3300005367 Bacteria 1774
26 Ga0070667_100230192 3300005367 Bacteria 1652
27 Ga0070679_100081288 3300005530 Bacteria 3229
28 Ga0068853_100102210 3300005539 Bacteria 2536
29 Ga0070665_100002800 3300005548 Bacteria 18903
30 Ga0070665_100009162 3300005548 Bacteria 10025
31 Ga0070665_100103101 3300005548 Bacteria 2856
32 Ga0068855_100001523 3300005563 Bacteria 29042
33 Ga0068855_100024316 3300005563 Bacteria 7251
34 Ga0068855_100030870 3300005563 Bacteria 6406
35 Ga0068857_100062580 3300005577 Bacteria 3308
36 Ga0068854_100016529 3300005578 Bacteria 4921
37 Ga0068856_100005766 3300005614 Bacteria 12205
38 Ga0068852_100000431 3300005616 Bacteria 27867
39 Ga0068852_100363599 3300005616 Bacteria 1416
40 Ga0068864_100018440 3300005618 Bacteria 5831
41 Ga0068863_100000006 3300005841 Bacteria 265379
42 Ga0068863_100041657 3300005841 Bacteria 4366
43 Ga0068863_100160124 3300005841 Bacteria 2156
44 Ga0068858_100038361 3300005842 Bacteria 4444
45 Ga0068858_100047021 3300005842 Bacteria 4001
46 Ga0068860_100000105 3300005843 Bacteria 134520
47 Ga0068860_100025797 3300005843 Bacteria 5669
48 Ga0068860_100034941 3300005843 Bacteria 4823
49 Ga0068860_100038951 3300005843 Bacteria 4547
50 Ga0068862_100001900 3300005844 Bacteria 18964
51 Ga0068862_100039479 3300005844 Bacteria 4009
52 Ga0068862_100119039 3300005844 Bacteria 2326
53 Ga0075368_10006084 3300006042 Bacteria 4195
54 Ga0075363_100010352 3300006048 Bacteria 4424
55 Ga0075432_10003521 3300006058 Bacteria 5306
56 Ga0075362_10001684 3300006177 Bacteria 7165
57 Ga0075367_10001545 3300006178 Bacteria 9957
58 Ga0075370_10003375 3300006353 Bacteria 7587
59 Ga0105251_10000917 3300009011 Bacteria 26406
60 Ga0105240_10011761 3300009093 Bacteria 12160
61 Ga0105243_10138611 3300009148 Bacteria 2072
62 Ga0105248_10012116 3300009177 Bacteria 9513
63 Ga0105248_10255816 3300009177 Bacteria 1971
64 Ga0105248_10544760 3300009177 Bacteria 1309
65 Ga0105238_10092486 3300009551 Bacteria 3012
66 Ga0157373_10073719 3300013100 Bacteria 2408
67 Ga0163162_10041062 3300013306 Bacteria 4628
68 Ga0157372_10068679 3300013307 Bacteria 3984
69 Ga0209050_1000874 3300025298 Bacteria 40602
70 Ga0207697_10065850 3300025315 Bacteria 1512
71 Ga0207713_1005773 3300025735 Bacteria 7664
72 Ga0207713_1033793 3300025735 Bacteria 2229
73 Ga0207705_10000073 3300025909 Bacteria 124226
74 Ga0207695_10004371 3300025913 Bacteria 19347
75 Ga0207652_10073352 3300025921 Bacteria 2977
76 Ga0207681_10000476 3300025923 Bacteria 28033
77 Ga0207681_10002416 3300025923 Bacteria 11860
78 Ga0207681_10002525 3300025923 Bacteria 11631
79 Ga0207650_10127522 3300025925 Bacteria 1988
80 Ga0207644_10000004 3300025931 Bacteria 566613
81 Ga0207644_10003989 3300025931 Bacteria 9587
82 Ga0207644_10114532 3300025931 Bacteria 2043
83 Ga0207709_10069371 3300025935 Bacteria 2231
84 Ga0207711_10049419 3300025941 Bacteria 3601
85 Ga0207711_10168306 3300025941 Bacteria 1987
86 Ga0207667_10002020 3300025949 Bacteria 25462
87 Ga0207667_10043308 3300025949 Bacteria 4778
88 Ga0207667_10172851 3300025949 Bacteria 2221
89 Ga0207668_10012535 3300025972 Bacteria 5192
90 Ga0207668_10048442 3300025972 Bacteria 2916
91 Ga0207668_10133329 3300025972 Bacteria 1900
92 Ga0207668_10170295 3300025972 Bacteria 1707
93 Ga0207640_10000467 3300025981 Bacteria 24746
94 Ga0207658_10000864 3300025986 Bacteria 25336
95 Ga0207658_10001158 3300025986 Bacteria 21115
96 Ga0207658_10001723 3300025986 Bacteria 16516
97 Ga0207703_10002074 3300026035 Bacteria 17625
98 Ga0207703_10155013 3300026035 Bacteria 2001
99 Ga0207678_10049200 3300026067 Bacteria 3643
100 Ga0207702_10006315 3300026078 Bacteria 10238
101 Ga0207641_10000271 3300026088 Bacteria 65831
102 Ga0207641_10169874 3300026088 Bacteria 1989
103 Ga0207676_10016383 3300026095 Bacteria 5365
104 Ga0207674_10150933 3300026116 Bacteria 2281
105 Ga0207698_10000049 3300026142 Bacteria 90098
106 Ga0207698_10033501 3300026142 Bacteria 3734
107 Ga0209813_10000257 3300027866 Bacteria 15404
108 Ga0268266_10003567 3300028379 Bacteria 15419
109 Ga0268266_10019129 3300028379 Bacteria 5832
110 Ga0268265_10011797 3300028380 Bacteria 5908
111 Ga0268265_10036921 3300028380 Bacteria 3582
112 Ga0268265_10069572 3300028380 Bacteria 2734
113 Ga0268264_10000067 3300028381 Bacteria 284445
114 Ga0268264_10003040 3300028381 Bacteria 14544
115 Ga0268264_10010027 3300028381 Bacteria 7842
116 Ga0265327_10024788 3300031251 Bacteria 3513
117 Ga0307405_10061228 3300031731 Bacteria 2378
118 Ga0307405_10113147 3300031731 Bacteria 1842
119 Ga0307413_10031730 3300031824 Bacteria 2985
120 Ga0307413_10215750 3300031824 Bacteria 1397
121 Ga0307412_10030761 3300031911 Bacteria 3384
122 Ga0307414_10016307 3300032004 Bacteria 4513
123 Ga0307411_10042109 3300032005 Bacteria 2911
124 Ga0307411_10058731 3300032005 Bacteria 2547
125 Ga0439462_0000635 3300042015 Bacteria 7061
126 Ga0495627_000400 3300046453 Bacteria 38943
127 Ga0495638_0041422 3300046460 Bacteria 2914
128 Ga0495650_0001798 3300046471 Bacteria 19349
129 Ga0495650_0068773 3300046471 Bacteria 1396
130 Ga0495596_0000406 3300046500 Bacteria 27499
131 Ga0495606_0017428 3300046507 Bacteria 5432
132 Ga0495610_0000061 3300046512 Bacteria 130986
133 Ga0495610_0002332 3300046512 Bacteria 16046
134 Ga0495620_0008609 3300046515 Bacteria 5471
135 Ga0495632_0004452 3300046519 Bacteria 9518
136 Ga0495643_0000039 3300046522 Bacteria 235175
137 Ga0495643_0011273 3300046522 Bacteria 5455
138 Ga0495609_0011113 3300046538 Bacteria 4297
139 Ga0495633_0062873 3300046558 Bacteria 1738
140 Ga0495625_0036256 3300046660 Bacteria 3626
141 Ga0495681_0000389 3300047470 Bacteria 34341
142 Ga0495615_0000136 3300048090 Bacteria 18482
143 Ga0495626_0002596 3300048091 Bacteria 12353
144 Ga0496100_0183510 3300048903 Bacteria 1514
145 Ga0496101_0021120 3300048904 Bacteria 4469
146 Ga0496102_0000570 3300048905 Bacteria 39156
147 Ga0496103_0000180 3300048906 Bacteria 64400
148 Ga0496104_0009397 3300048907 Bacteria 8696
149 Ga0496104_0132918 3300048907 Bacteria 2390
150 Ga0496105_0011921 3300048908 Bacteria 6883
151 Ga0496105_0052671 3300048908 Bacteria 3361
152 Ga0496106_0013289 3300048909 Bacteria 6077
153 Ga0496107_0000885 3300048910 Bacteria 17648
154 Ga0496108_0020154 3300048911 Bacteria 5480
155 Ga0496109_0095001 3300048912 Bacteria 2760
156 Ga0496112_0006540 3300048915 Bacteria 10251
157 Ga0496112_0434097 3300048915 Bacteria 1252
158 Ga0496113_0016055 3300048916 Bacteria 5167
159 Ga0496114_0019475 3300048917 Bacteria 5498
160 Ga0496116_0154083 3300048919 Bacteria 1271
161 Ga0496117_0011499 3300048920 Bacteria 7922
162 Ga0496119_0000114 3300048922 Bacteria 114495
163 Ga0496120_0008237 3300048923 Bacteria 7616
164 Ga0496121_0000024 3300048924 Bacteria 462959
165 Ga0496121_0000620 3300048924 Bacteria 66051
166 Ga0496121_0035733 3300048924 Bacteria 4445
167 Ga0496122_0001060 3300048925 Bacteria 47797
168 Ga0496122_0293796 3300048925 Bacteria 880
169 Ga0496123_0003719 3300048926 Bacteria 16783
170 Ga0496123_0006934 3300048926 Bacteria 10824
171 Ga0496123_0016050 3300048926 Bacteria 6105
172 Ga0496124_0002608 3300048927 Bacteria 23273
173 Ga0496124_0005101 3300048927 Bacteria 14955
174 Ga0496124_0018156 3300048927 Bacteria 6600
175 Ga0496125_0006708 3300048928 Bacteria 12378
176 Ga0496125_0006969 3300048928 Bacteria 12103
177 Ga0496126_0000173 3300048929 Bacteria 146490
178 Ga0496126_0003889 3300048929 Bacteria 18373
179 Ga0496126_0314135 3300048929 Bacteria 1289
180 Ga0501033_0116220 3300049570 Bacteria 1944
181 Ga0501034_0293756 3300049571 Bacteria 1563
182 nmdc:mga03683_291_c1 3300050489 Bacteria 14963
183 nmdc:mga03683_40853_c1 3300050489 Bacteria 1904
184 nmdc:mga03n38_70457_c1 3300050490 Bacteria 1617
185 nmdc:mga00v17_45785_c1 3300050491 Bacteria 2645
186 nmdc:mga0k408_112363_c1 3300050493 Bacteria 1611
187 nmdc:mga06z11_474_c1 3300050494 Bacteria 14851
188 nmdc:mga04h51_451_c1 3300050495 Bacteria 9873
189 nmdc:mga07m45_72_c1 3300050496 Bacteria 38126
190 nmdc:mga07m45_945_c1 3300050496 Bacteria 12726
191 nmdc:mga0sz30_1777_c1 3300050516 Bacteria 7656
192 Ga0500607_001643 3300053121 Bacteria 19653
193 Ga0500618_001427 3300053125 Bacteria 10662
194 Ga0500559_0007610 3300053136 Bacteria 4781
195 Ga0500622_0000136 3300053156 Bacteria 78059
196 Ga0500637_0000314 3300053178 Bacteria 18087
197 2511127365 2510917021 Bacteria 5705459
198 2738711511 2738541275 Bacteria 4830863
199 2738849936 2738541301 Bacteria 4834102
200 2738865665 2738541304 Bacteria 4833665
201 2739298183 2738543022 Bacteria 4835059
202 2739359861 2738543033 Bacteria 4833336
203 2819551864 2818991438 Bacteria 5793701
204 2848298722 2848297114 Bacteria 3608511
205 2882807137 2882806704 Bacteria 3007728
206 2928104128 2928100450 Bacteria 4837635
207 2928961593 2928959182 Bacteria 4725774
208 3000867013 3000865235 Bacteria 3106258
209 8054307495 8054302542 Bacteria 5698134
210 Ga0105248_10006990
211 SwRhRL2b_contig_307682
212 SwRhRL2b_contig_652619
213 JGI24751J29686_10000251
214 Ga0065704_10000192
215 Ga0065704_10070419
216 Ga0065704_10164637
217 Ga0070658_10000449
218 Ga0070690_100022177
219 Ga0070670_100058451
220 Ga0070666_10004056
221 Ga0070682_100068182
222 Ga0070668_100041974
223 Ga0070668_100047071
224 Ga0070668_100138742
225 Ga0070668_100372739
226 Ga0070669_100000473
227 Ga0070669_100000799
228 Ga0070671_100000003
229 Ga0070671_100014802
230 Ga0070671_100061596
231 Ga0070671_100110503
232 Ga0070671_100184501
233 Ga0070667_100001211
234 Ga0070667_100199679
235 Ga0070667_100230192
236 Ga0070679_100081288
237 Ga0068853_100102210
238 Ga0070665_100002800
239 Ga0070665_100009162
240 Ga0070665_100103101
241 Ga0068855_100001523
242 Ga0068855_100024316
243 Ga0068855_100030870
244 Ga0068857_100062580
245 Ga0068854_100016529
246 Ga0068856_100005766
247 Ga0068852_100000431
248 Ga0068852_100363599
249 Ga0068864_100018440
250 Ga0068863_100000006
251 Ga0068863_100041657
252 Ga0068863_100160124
253 Ga0068858_100038361
254 Ga0068858_100047021
255 Ga0068860_100000105
256 Ga0068860_100025797
257 Ga0068860_100034941
258 Ga0068860_100038951
259 Ga0068862_100001900
260 Ga0068862_100039479
261 Ga0068862_100119039
262 Ga0075368_10006084
263 Ga0075363_100010352
264 Ga0075432_10003521
265 Ga0075362_10001684
266 Ga0075367_10001545
267 Ga0075370_10003375
268 Ga0105251_10000917
269 Ga0105240_10011761
270 Ga0105243_10138611
271 Ga0105248_10012116
272 Ga0105248_10255816
273 Ga0105248_10544760
274 Ga0105238_10092486
275 Ga0157373_10073719
276 Ga0163162_10041062
277 Ga0157372_10068679
278 Ga0209050_1000874
279 Ga0207697_10065850
280 Ga0207713_1005773
281 Ga0207713_1033793
282 Ga0207705_10000073
283 Ga0207695_10004371
284 Ga0207652_10073352
285 Ga0207681_10000476
286 Ga0207681_10002416
287 Ga0207681_10002525
288 Ga0207650_10127522
289 Ga0207644_10000004
290 Ga0207644_10003989
291 Ga0207644_10114532
292 Ga0207709_10069371
293 Ga0207711_10049419
294 Ga0207711_10168306
295 Ga0207667_10002020
296 Ga0207667_10043308
297 Ga0207667_10172851
298 Ga0207668_10012535
299 Ga0207668_10048442
300 Ga0207668_10133329
301 Ga0207668_10170295
302 Ga0207640_10000467
303 Ga0207658_10000864
304 Ga0207658_10001158
305 Ga0207658_10001723
306 Ga0207703_10002074
307 Ga0207703_10155013
308 Ga0207678_10049200
309 Ga0207702_10006315
310 Ga0207641_10000271
311 Ga0207641_10169874
312 Ga0207676_10016383
313 Ga0207674_10150933
314 Ga0207698_10000049
315 Ga0207698_10033501
316 Ga0209813_10000257
317 Ga0268266_10003567
318 Ga0268266_10019129
319 Ga0268265_10011797
320 Ga0268265_10036921
321 Ga0268265_10069572
322 Ga0268264_10000067
323 Ga0268264_10003040
324 Ga0268264_10010027
325 Ga0265327_10024788
326 Ga0307405_10061228
327 Ga0307405_10113147
328 Ga0307413_10031730
329 Ga0307413_10215750
330 Ga0307412_10030761
331 Ga0307414_10016307
332 Ga0307411_10042109
333 Ga0307411_10058731
334 Ga0439462_0000635
335 Ga0495627_000400
336 Ga0495638_0041422
337 Ga0495650_0001798
338 Ga0495650_0068773
339 Ga0495596_0000406
340 Ga0495606_0017428
341 Ga0495610_0000061
342 Ga0495610_0002332
343 Ga0495620_0008609
344 Ga0495632_0004452
345 Ga0495643_0000039
346 Ga0495643_0011273
347 Ga0495609_0011113
348 Ga0495633_0062873
349 Ga0495625_0036256
350 Ga0495681_0000389
351 Ga0495615_0000136
352 Ga0495626_0002596
353 Ga0496100_0183510
354 Ga0496101_0021120
355 Ga0496102_0000570
356 Ga0496103_0000180
357 Ga0496104_0009397
358 Ga0496104_0132918
359 Ga0496105_0011921
360 Ga0496105_0052671
361 Ga0496106_0013289
362 Ga0496107_0000885
363 Ga0496108_0020154
364 Ga0496109_0095001
365 Ga0496112_0006540
366 Ga0496112_0434097
367 Ga0496113_0016055
368 Ga0496114_0019475
369 Ga0496116_0154083
370 Ga0496117_0011499
371 Ga0496119_0000114
372 Ga0496120_0008237
373 Ga0496121_0000024
374 Ga0496121_0000620
375 Ga0496121_0035733
376 Ga0496122_0001060
377 Ga0496122_0293796
378 Ga0496123_0003719
379 Ga0496123_0006934
380 Ga0496123_0016050
381 Ga0496124_0002608
382 Ga0496124_0005101
383 Ga0496124_0018156
384 Ga0496125_0006708
385 Ga0496125_0006969
386 Ga0496126_0000173
387 Ga0496126_0003889
388 Ga0496126_0314135
389 Ga0501033_0116220
390 Ga0501034_0293756
391 nmdc:mga03683_291_c1
392 nmdc:mga03683_40853_c1
393 nmdc:mga03n38_70457_c1
394 nmdc:mga00v17_45785_c1
395 nmdc:mga0k408_112363_c1
396 nmdc:mga06z11_474_c1
397 nmdc:mga04h51_451_c1
398 nmdc:mga07m45_72_c1
399 nmdc:mga07m45_945_c1
400 nmdc:mga0sz30_1777_c1
401 Ga0500607_001643
402 Ga0500618_001427
403 Ga0500559_0007610
404 Ga0500622_0000136
405 Ga0500637_0000314
406 2511127365
407 2738711511
408 2738849936
409 2738865665
410 2739298183
411 2739359861
412 2819551864
413 2848298722
414 2882807137
415 2928104128
416 2928961593
417 3000867013
418 8054307495

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01872

RibD_C

RibD C-terminal domain

176

245

0.96

PF00383

dCMP_cyt_deam_1

Cytidine and deoxycytidylate deaminase zinc-binding region

30

130

0.91

PF01872

RibD_C

RibD C-terminal domain

261

335

0.84

PF14437

MafB19-deam

MafB19-like deaminase

31

159

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
2hxv-assembly1.cif.gz_A-2 crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828) from thermotoga maritima at 1.80 a resolution 0.8707 4 318
8dq9-assembly1.cif.gz_B crystal structure of gdp bound 3-dehydroquinate dehydratase i from klebsiella oxytoca 0.8469 3 317
3zpc-assembly1.cif.gz_B acinetobacter baumannii ribd, form 1 0.8444 4 318
2hxv-assembly1.cif.gz_A-2 crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828) from thermotoga maritima at 1.80 a resolution 0.8335 4 318
7lrh-assembly1.cif.gz_A c-terminal domain of ribd from brucella abortus (5-amino-6-ribosylamino-2,4(1h,3h)-pyrimidinedione 5'-phosphate reductase) 0.8318 147 319
ID Description Score Start End Superfamily
af_Q8GWP5_63_211_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9472 3 140 3.40.140.10
4g3mB01 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.946 1 126 3.40.140.10
af_Q2FXF9_2_122_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.9382 24 140 3.40.140.10
af_I1N3Z5_29_159_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8962 4 127 3.40.140.10
af_K7WIZ6_44_190_3.40.140.10 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2;Cytidine Deaminase, domain 2 0.8923 2 127 3.40.140.10
ID Description Score Start End GO Terms
AF-A0A4Q5NX58-F1-model_v4 Riboflavin biosynthesis protein RibD 0.9822 4 100 GO:0008270
GO:0008835
AF-A0A2M7ESU7-F1-model_v4 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) 0.9749 10 126 GO:0008270
GO:0008835
GO:0009231
AF-A0A3N5I9C5-F1-model_v4 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) 0.9745 10 126 GO:0008270
GO:0008835
GO:0009231
GO:0016491
AF-A0A6D0ET81-F1-model_v4 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) 0.9719 4 127 GO:0008270
GO:0008835
GO:0009231
GO:0016491
AF-A0A258C7Q3-F1-model_v4 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) 0.9716 1 126 GO:0008270
GO:0008835
GO:0009231

Map