F318182

General Info

Members Datasets Scaffolds Average Seq Length
208 144 416 194

Family's Representative Sequence

Representative Sequence 3300045049|Ga0466959_0098485|Ga0466959_0098485_854_1486
Length 210
Sequence MRPTAMISPHRRPLRHLLRSWAADCHGVAATEFAFIVPLMLVLFFGMVEFCSAIAVDRKVTLMARTLSDLTSQSTQVGDADIAGFFLVANKIIWPYQAAAPNPYFTDPVSGTISELFVDPTTKQARVIWSKGTEARTPDTYVTTVPAALLVGGSYLIFSEVKYTYKPTVGYVMAKAGITLSDYAYTRPRQSSCVFWSNSSSKVTGSCPTT

Samples

Sample ID Description Type Environment
1 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
9 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
17 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
20 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
21 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
24 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
27 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
36 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
39 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
40 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
41 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
42 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
45 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
48 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
49 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
50 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
51 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
52 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
53 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
54 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
55 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
56 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
57 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
58 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
59 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
60 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
63 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
64 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
65 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
66 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
67 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
68 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
69 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
70 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
71 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
72 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
104 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
105 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
106 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
107 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
109 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
110 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
111 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
112 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
113 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
114 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
115 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
116 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
117 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
118 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
119 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
120 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
121 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
122 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
123 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
124 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
125 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
126 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
127 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
131 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
132 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
133 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
134 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
136 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
137 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
138 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
139 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
140 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
141 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
142 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
143 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
144 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.77
Nodule 2.4
Rhizoplane 1.92
Rhizosphere 82.69
Stem 0
Stem Tuber 0
Unclassified 2.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466959_0098485 3300045049 Bacteria 2095
2 JGI24740J21852_10002895 3300001979 Bacteria 7667
3 JGI24739J22299_10001088 3300001989 Bacteria 10112
4 JGI24737J22298_10001015 3300001990 Bacteria 9949
5 JGI24735J21928_10020961 3300002067 Bacteria 1999
6 JGI24735J21928_10036588 3300002067 Unclassified 1440
7 JGI24738J21930_10007685 3300002075 Bacteria 2476
8 rootH2_10291195 3300003320 Bacteria 1841
9 rootH1_10068788 3300003323 Bacteria 2199
10 JGI25404J52841_10009090 3300003659 Bacteria 2125
11 JGI25404J52841_10034402 3300003659 Bacteria 1079
12 Ga0070680_100241876 3300005336 Bacteria 1525
13 Ga0068868_100438690 3300005338 Bacteria 1134
14 Ga0068868_100668030 3300005338 Bacteria 927
15 Ga0070661_100310380 3300005344 Bacteria 1230
16 Ga0070674_100488161 3300005356 Bacteria 1024
17 Ga0070659_100200698 3300005366 Bacteria 1642
18 Ga0070667_100144319 3300005367 Bacteria 2087
19 Ga0070667_100658600 3300005367 Bacteria 967
20 Ga0070709_10035902 3300005434 Bacteria 3015
21 Ga0070714_100121441 3300005435 Bacteria 2325
22 Ga0070713_100003931 3300005436 Bacteria 9866
23 Ga0070710_10011233 3300005437 Bacteria 4421
24 Ga0070711_100368501 3300005439 Bacteria 1159
25 Ga0070711_100388942 3300005439 Bacteria 1129
26 Ga0070663_100087049 3300005455 Bacteria 2308
27 Ga0070678_100131916 3300005456 Bacteria 1986
28 Ga0070678_100190354 3300005456 Bacteria 1686
29 Ga0070678_100206150 3300005456 Bacteria 1626
30 Ga0070678_100529602 3300005456 Bacteria 1043
31 Ga0070678_100615067 3300005456 Bacteria 971
32 Ga0070678_100622178 3300005456 Bacteria 966
33 Ga0070681_10014949 3300005458 Bacteria 7717
34 Ga0070706_100297912 3300005467 Bacteria 1505
35 Ga0070679_100075690 3300005530 Bacteria 3355
36 Ga0068853_100017070 3300005539 Bacteria 5987
37 Ga0068853_100023162 3300005539 Bacteria 5196
38 Ga0070672_101033801 3300005543 Bacteria 729
39 Ga0068855_100879762 3300005563 Bacteria 947
40 Ga0070664_100811470 3300005564 Unclassified 875
41 Ga0068857_100003445 3300005577 Bacteria 13196
42 Ga0068857_100308129 3300005577 Bacteria 1461
43 Ga0068857_100451790 3300005577 Bacteria 1201
44 Ga0068854_100024076 3300005578 Bacteria 4165
45 Ga0068854_100068248 3300005578 Bacteria 2592
46 Ga0068856_100001074 3300005614 Bacteria 28942
47 Ga0068852_100083743 3300005616 Bacteria 2836
48 Ga0068852_100096845 3300005616 Bacteria 2653
49 Ga0068864_100146864 3300005618 Bacteria 2133
50 Ga0068851_10000772 3300005834 Bacteria 13788
51 Ga0068858_100533514 3300005842 Bacteria 1135
52 Ga0081455_10128955 3300005937 Bacteria 1981
53 Ga0081455_10153655 3300005937 Bacteria 1772
54 Ga0081540_1005664 3300005983 Bacteria 9286
55 Ga0081540_1013588 3300005983 Bacteria 5281
56 Ga0081540_1017786 3300005983 Bacteria 4389
57 Ga0081540_1032972 3300005983 Bacteria 2820
58 Ga0081540_1060272 3300005983 Bacteria 1817
59 Ga0075368_10048596 3300006042 Bacteria 1681
60 Ga0075363_100110973 3300006048 Bacteria 1524
61 Ga0075367_10296101 3300006178 Bacteria 1018
62 Ga0075366_10124779 3300006195 Bacteria 1552
63 Ga0075366_10160957 3300006195 Bacteria 1360
64 Ga0097621_100144489 3300006237 Bacteria 2035
65 Ga0097621_100620303 3300006237 Bacteria 990
66 Ga0068871_100098640 3300006358 Bacteria 2444
67 Ga0068871_100461143 3300006358 Bacteria 1140
68 Ga0068871_100529823 3300006358 Bacteria 1065
69 Ga0075428_100444972 3300006844 Bacteria 1388
70 Ga0075434_100297621 3300006871 Bacteria 1634
71 Ga0099824_1030917 3300006942 Bacteria 2093
72 Ga0099822_1008751 3300006943 Bacteria 12906
73 Ga0099794_10049966 3300007265 Bacteria 2011
74 Ga0099795_10036324 3300007788 Bacteria 1728
75 Ga0099795_10156295 3300007788 Bacteria 938
76 Ga0105240_10006068 3300009093 Bacteria 17849
77 Ga0105240_10011879 3300009093 Bacteria 12083
78 Ga0105245_10089943 3300009098 Bacteria 2823
79 Ga0105245_10320968 3300009098 Bacteria 1526
80 Ga0105247_10447406 3300009101 Bacteria 931
81 Ga0105247_10707490 3300009101 Bacteria 759
82 Ga0105243_10329627 3300009148 Bacteria 1394
83 Ga0105243_10740952 3300009148 Bacteria 962
84 Ga0105241_10005490 3300009174 Bacteria 9378
85 Ga0105248_10323153 3300009177 Bacteria 1738
86 Ga0105248_10359994 3300009177 Bacteria 1638
87 Ga0105237_10075543 3300009545 Bacteria 3361
88 Ga0105237_10201437 3300009545 Bacteria 1991
89 Ga0105237_10568656 3300009545 Bacteria 1140
90 Ga0105238_10002249 3300009551 Bacteria 19487
91 Ga0105238_10043599 3300009551 Bacteria 4539
92 Ga0105238_10052177 3300009551 Bacteria 4112
93 Ga0105238_10097634 3300009551 Bacteria 2923
94 Ga0105238_10505402 3300009551 Bacteria 1210
95 Ga0099796_10007596 3300010159 Bacteria 2843
96 Ga0105239_10012149 3300010375 Bacteria 9601
97 Ga0105239_10051500 3300010375 Bacteria 4513
98 Ga0105239_10465658 3300010375 Bacteria 1435
99 Ga0105239_10829962 3300010375 Bacteria 1060
100 Ga0105246_10035359 3300011119 Bacteria 3338
101 Ga0105246_10064102 3300011119 Bacteria 2566
102 Ga0105246_10448952 3300011119 Bacteria 1083
103 Ga0157370_10755057 3300013104 Bacteria 886
104 Ga0157374_10233929 3300013296 Bacteria 1806
105 Ga0157378_10007897 3300013297 Bacteria 9284
106 Ga0157378_10190658 3300013297 Bacteria 1933
107 Ga0157378_10831614 3300013297 Bacteria 951
108 Ga0157378_11787053 3300013297 Unclassified 663
109 Ga0157375_10695579 3300013308 Bacteria 1170
110 Ga0163163_10497971 3300014325 Bacteria 1280
111 Ga0157380_10432952 3300014326 Bacteria 1258
112 Ga0157379_10329398 3300014968 Bacteria 1395
113 Ga0157376_10131360 3300014969 Bacteria 2235
114 Ga0157376_11470656 3300014969 Bacteria 714
115 Ga0213874_10081644 3300021377 Bacteria 1048
116 Ga0213876_10041509 3300021384 Bacteria 2431
117 Ga0207656_10182248 3300025321 Bacteria 1008
118 Ga0207692_10336336 3300025898 Bacteria 927
119 Ga0207647_10000764 3300025904 Bacteria 25126
120 Ga0207699_10008865 3300025906 Bacteria 4984
121 Ga0207684_10074414 3300025910 Bacteria 2886
122 Ga0207654_10000201 3300025911 Bacteria 36898
123 Ga0207707_10242336 3300025912 Bacteria 1567
124 Ga0207695_10000343 3300025913 Bacteria 107739
125 Ga0207695_10078542 3300025913 Bacteria 3348
126 Ga0207671_10133750 3300025914 Bacteria 1905
127 Ga0207693_10007559 3300025915 Bacteria 8930
128 Ga0207663_10005449 3300025916 Bacteria 6410
129 Ga0207652_10161173 3300025921 Bacteria 2011
130 Ga0207694_10000339 3300025924 Bacteria 44198
131 Ga0207694_10069553 3300025924 Bacteria 2750
132 Ga0207687_10061198 3300025927 Bacteria 2658
133 Ga0207700_10074066 3300025928 Bacteria 2632
134 Ga0207700_10843226 3300025928 Bacteria 820
135 Ga0207690_10584157 3300025932 Unclassified 911
136 Ga0207709_10195999 3300025935 Bacteria 1439
137 Ga0207711_10978961 3300025941 Bacteria 785
138 Ga0207679_10747676 3300025945 Unclassified 889
139 Ga0207667_10017028 3300025949 Bacteria 8198
140 Ga0207640_10002807 3300025981 Bacteria 9335
141 Ga0207640_10049076 3300025981 Bacteria 2731
142 Ga0207640_10107720 3300025981 Bacteria 1968
143 Ga0207677_10301606 3300026023 Bacteria 1324
144 Ga0207677_10446748 3300026023 Bacteria 1107
145 Ga0207703_10617246 3300026035 Bacteria 1027
146 Ga0207703_10643266 3300026035 Bacteria 1005
147 Ga0207639_10023609 3300026041 Bacteria 4441
148 Ga0207639_10315329 3300026041 Bacteria 1387
149 Ga0207678_10138239 3300026067 Bacteria 2079
150 Ga0207678_10727570 3300026067 Bacteria 874
151 Ga0207702_10000006 3300026078 Bacteria 346370
152 Ga0207702_10245464 3300026078 Bacteria 1679
153 Ga0207676_10167693 3300026095 Bacteria 1910
154 Ga0207674_10002334 3300026116 Bacteria 24007
155 Ga0207674_10003146 3300026116 Bacteria 20343
156 Ga0207674_10264899 3300026116 Bacteria 1666
157 Ga0207675_100349639 3300026118 Bacteria 1449
158 Ga0207683_10131179 3300026121 Bacteria 2254
159 Ga0207683_10235964 3300026121 Bacteria 1668
160 Ga0207683_10239771 3300026121 Bacteria 1654
161 Ga0207683_10261878 3300026121 Bacteria 1579
162 Ga0207683_10376432 3300026121 Bacteria 1305
163 Ga0207698_10132407 3300026142 Bacteria 2133
164 Ga0207698_10455450 3300026142 Bacteria 1236
165 Ga0209589_1000055 3300027357 Bacteria 111890
166 Ga0209489_100128 3300027361 Bacteria 111890
167 Ga0209700_100137 3300027363 Bacteria 111890
168 Ga0209813_10154391 3300027866 Bacteria 824
169 Ga0268266_10594559 3300028379 Bacteria 1063
170 Ga0307517_10002317 3300028786 Bacteria 30737
171 Ga0307513_10431836 3300031456 Bacteria 1045
172 Ga0307408_100095283 3300031548 Bacteria 2256
173 Ga0307516_10459171 3300031730 Bacteria 929
174 Ga0307406_10122522 3300031901 Bacteria 1811
175 Ga0373936_0078380 3300035113 Bacteria 1372
176 Ga0373956_0003162 3300035119 Bacteria 6657
177 Ga0373943_0136711 3300035170 Bacteria 1317
178 Ga0373927_0164401 3300035695 Bacteria 1454
179 Ga0436365_0652649 3300039437 Bacteria 2917
180 Ga0436363_0067851 3300039450 Bacteria 2693
181 Ga0466963_0101432 3300044694 Bacteria 1970
182 Ga0466970_0154730 3300044765 Bacteria 1267
183 Ga0466967_0347323 3300045976 Bacteria 1435
184 Ga0495625_0238735 3300046660 Bacteria 1184
185 Ga0495600_0222524 3300046809 Bacteria 1207
186 Ga0495674_0649123 3300047319 Bacteria 832
187 Ga0495686_0146611 3300047472 Bacteria 1389
188 Ga0496101_0842162 3300048904 Bacteria 723
189 Ga0496112_1199373 3300048915 Bacteria 676
190 Ga0496114_0482647 3300048917 Bacteria 1097
191 Ga0496114_0552820 3300048917 Bacteria 1017
192 Ga0496121_0094714 3300048924 Bacteria 2322
193 Ga0496121_0247881 3300048924 Bacteria 1237
194 Ga0496122_0144541 3300048925 Bacteria 1481
195 Ga0496124_0013092 3300048927 Bacteria 8124
196 Ga0496125_0043837 3300048928 Bacteria 3791
197 Ga0496126_0031303 3300048929 Bacteria 5029
198 Ga0501036_0383481 3300049572 Bacteria 1173
199 Ga0501067_0581785 3300049583 Unclassified 627
200 Ga0501073_0292454 3300049589 Bacteria 1124
201 Ga0501076_0721317 3300049592 Bacteria 823
202 nmdc:mga03n38_73051_c1 3300050490 Bacteria 1592
203 nmdc:mga0yw44_423280_c1 3300050492 Bacteria 902
204 nmdc:mga0k408_590337_c1 3300050493 Bacteria 655
205 nmdc:mga04h51_179005_c1 3300050495 Bacteria 824
206 nmdc:mga07m45_562376_c1 3300050496 Bacteria 659
207 nmdc:mga0n895_361327_c1 3300050512 Bacteria 1470
208 Ga0500620_042955 3300053155 Bacteria 1491
209 Ga0466959_0098485
210 JGI24740J21852_10002895
211 JGI24739J22299_10001088
212 JGI24737J22298_10001015
213 JGI24735J21928_10020961
214 JGI24735J21928_10036588
215 JGI24738J21930_10007685
216 rootH2_10291195
217 rootH1_10068788
218 JGI25404J52841_10009090
219 JGI25404J52841_10034402
220 Ga0070680_100241876
221 Ga0068868_100438690
222 Ga0068868_100668030
223 Ga0070661_100310380
224 Ga0070674_100488161
225 Ga0070659_100200698
226 Ga0070667_100144319
227 Ga0070667_100658600
228 Ga0070709_10035902
229 Ga0070714_100121441
230 Ga0070713_100003931
231 Ga0070710_10011233
232 Ga0070711_100368501
233 Ga0070711_100388942
234 Ga0070663_100087049
235 Ga0070678_100131916
236 Ga0070678_100190354
237 Ga0070678_100206150
238 Ga0070678_100529602
239 Ga0070678_100615067
240 Ga0070678_100622178
241 Ga0070681_10014949
242 Ga0070706_100297912
243 Ga0070679_100075690
244 Ga0068853_100017070
245 Ga0068853_100023162
246 Ga0070672_101033801
247 Ga0068855_100879762
248 Ga0070664_100811470
249 Ga0068857_100003445
250 Ga0068857_100308129
251 Ga0068857_100451790
252 Ga0068854_100024076
253 Ga0068854_100068248
254 Ga0068856_100001074
255 Ga0068852_100083743
256 Ga0068852_100096845
257 Ga0068864_100146864
258 Ga0068851_10000772
259 Ga0068858_100533514
260 Ga0081455_10128955
261 Ga0081455_10153655
262 Ga0081540_1005664
263 Ga0081540_1013588
264 Ga0081540_1017786
265 Ga0081540_1032972
266 Ga0081540_1060272
267 Ga0075368_10048596
268 Ga0075363_100110973
269 Ga0075367_10296101
270 Ga0075366_10124779
271 Ga0075366_10160957
272 Ga0097621_100144489
273 Ga0097621_100620303
274 Ga0068871_100098640
275 Ga0068871_100461143
276 Ga0068871_100529823
277 Ga0075428_100444972
278 Ga0075434_100297621
279 Ga0099824_1030917
280 Ga0099822_1008751
281 Ga0099794_10049966
282 Ga0099795_10036324
283 Ga0099795_10156295
284 Ga0105240_10006068
285 Ga0105240_10011879
286 Ga0105245_10089943
287 Ga0105245_10320968
288 Ga0105247_10447406
289 Ga0105247_10707490
290 Ga0105243_10329627
291 Ga0105243_10740952
292 Ga0105241_10005490
293 Ga0105248_10323153
294 Ga0105248_10359994
295 Ga0105237_10075543
296 Ga0105237_10201437
297 Ga0105237_10568656
298 Ga0105238_10002249
299 Ga0105238_10043599
300 Ga0105238_10052177
301 Ga0105238_10097634
302 Ga0105238_10505402
303 Ga0099796_10007596
304 Ga0105239_10012149
305 Ga0105239_10051500
306 Ga0105239_10465658
307 Ga0105239_10829962
308 Ga0105246_10035359
309 Ga0105246_10064102
310 Ga0105246_10448952
311 Ga0157370_10755057
312 Ga0157374_10233929
313 Ga0157378_10007897
314 Ga0157378_10190658
315 Ga0157378_10831614
316 Ga0157378_11787053
317 Ga0157375_10695579
318 Ga0163163_10497971
319 Ga0157380_10432952
320 Ga0157379_10329398
321 Ga0157376_10131360
322 Ga0157376_11470656
323 Ga0213874_10081644
324 Ga0213876_10041509
325 Ga0207656_10182248
326 Ga0207692_10336336
327 Ga0207647_10000764
328 Ga0207699_10008865
329 Ga0207684_10074414
330 Ga0207654_10000201
331 Ga0207707_10242336
332 Ga0207695_10000343
333 Ga0207695_10078542
334 Ga0207671_10133750
335 Ga0207693_10007559
336 Ga0207663_10005449
337 Ga0207652_10161173
338 Ga0207694_10000339
339 Ga0207694_10069553
340 Ga0207687_10061198
341 Ga0207700_10074066
342 Ga0207700_10843226
343 Ga0207690_10584157
344 Ga0207709_10195999
345 Ga0207711_10978961
346 Ga0207679_10747676
347 Ga0207667_10017028
348 Ga0207640_10002807
349 Ga0207640_10049076
350 Ga0207640_10107720
351 Ga0207677_10301606
352 Ga0207677_10446748
353 Ga0207703_10617246
354 Ga0207703_10643266
355 Ga0207639_10023609
356 Ga0207639_10315329
357 Ga0207678_10138239
358 Ga0207678_10727570
359 Ga0207702_10000006
360 Ga0207702_10245464
361 Ga0207676_10167693
362 Ga0207674_10002334
363 Ga0207674_10003146
364 Ga0207674_10264899
365 Ga0207675_100349639
366 Ga0207683_10131179
367 Ga0207683_10235964
368 Ga0207683_10239771
369 Ga0207683_10261878
370 Ga0207683_10376432
371 Ga0207698_10132407
372 Ga0207698_10455450
373 Ga0209589_1000055
374 Ga0209489_100128
375 Ga0209700_100137
376 Ga0209813_10154391
377 Ga0268266_10594559
378 Ga0307517_10002317
379 Ga0307513_10431836
380 Ga0307408_100095283
381 Ga0307516_10459171
382 Ga0307406_10122522
383 Ga0373936_0078380
384 Ga0373956_0003162
385 Ga0373943_0136711
386 Ga0373927_0164401
387 Ga0436365_0652649
388 Ga0436363_0067851
389 Ga0466963_0101432
390 Ga0466970_0154730
391 Ga0466967_0347323
392 Ga0495625_0238735
393 Ga0495600_0222524
394 Ga0495674_0649123
395 Ga0495686_0146611
396 Ga0496101_0842162
397 Ga0496112_1199373
398 Ga0496114_0482647
399 Ga0496114_0552820
400 Ga0496121_0094714
401 Ga0496121_0247881
402 Ga0496122_0144541
403 Ga0496124_0013092
404 Ga0496125_0043837
405 Ga0496126_0031303
406 Ga0501036_0383481
407 Ga0501067_0581785
408 Ga0501073_0292454
409 Ga0501076_0721317
410 nmdc:mga03n38_73051_c1
411 nmdc:mga0yw44_423280_c1
412 nmdc:mga0k408_590337_c1
413 nmdc:mga04h51_179005_c1
414 nmdc:mga07m45_562376_c1
415 nmdc:mga0n895_361327_c1
416 Ga0500620_042955

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07811

TadE

TadE-like protein

27

68

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
5wec-assembly1.cif.gz_A structure of an alternative pilotin from the type ii secretion system of vibrio cholerae 0.5383 96 148
2q57-assembly1.cif.gz_A x-ray structure of cerulean gfp: a tryptophan-based chromophore useful for fluorescence lifetime imaging 0.5035 96 173
1e93-assembly1.cif.gz_A high resolution structure and biochemical properties of a recombinant catalase depleted in iron 0.5006 96 172
3la1-assembly1.cif.gz_A high resolution crystal structure of cypet mutant a167i 0.5004 96 173
1h6n-assembly1.cif.gz_A formation of a tyrosyl radical intermediate in proteus mirabilis catalase by directed mutagenesis and consequences for nucleotide reactivity 0.4997 96 172
ID Description Score Start End Superfamily
af_A5PMK2_44_240_1.20.58.70 Mainly Alpha;Up-down Bundle;Methane Monooxygenase Hydroxylase; Chain G, domain 1; 0.6096 36 88 1.20.58.70
af_I1LHG3_113_220_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.5436 98 130 1.25.40.10
5yfxA01 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);translation initiation factor eif-2b, domain 1 0.5327 52 91 1.20.120.420
af_A4HXI0_482_759_3.40.850.10 Alpha Beta;3-Layer(aba) Sandwich;Kinesin;Kinesin motor domain 0.5044 77 172 3.40.850.10
af_F8W4B3_46_175_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.4993 97 185 2.60.40.10
ID Description Score Start End GO Terms
AF-A0A4Y3WEJ4-F1-model_v4 Flp pilus-assembly TadG-like N-terminal domain-containing protein 0.9445 31 196
AF-A0A163UBR0-F1-model_v4 Flp pilus-assembly TadG-like N-terminal domain-containing protein 0.9437 37 181
AF-A0A135I0Q7-F1-model_v4 Pilus assembly protein 0.9334 28 181
AF-W3RKW8-F1-model_v4 Flp pilus assembly protein TadG 0.9333 19 181 GO:0016020
AF-A0A1Q3JCW4-F1-model_v4 deleted 0.929 36 181

Map