F317713

General Info

Members Datasets Scaffolds Average Seq Length
208 150 203 432

Family's Representative Sequence

Representative Sequence 3300009094|Ga0111539_10029800|Ga0111539_100298006
Length 483
Sequence MLAEQETQFVETAVLRETTARSSYRSLRGDVFSNGAHGASVGIKARMTPVELIQKKRDGRPLSAEEIRSFVDRFVAREIADYQMSAMLMAMFLRGMSDAETGALMGAMLHSGKVLTLPSVPGPKVDKHSTGGVGDKVSICLAPLVAACGVFVPMVSGRGLGHTGGTVDKLESIPGFRTDLDEHAFERIVRDVGACLIGQTAEIAPADKRIYALRDVTATVESIPLIVASILSKKLAEGIDGLVLDVKVGRGAFMKDAKSARKLAQALVRVGTRAGKRVVALLTSMQSPLGRCVGNALEIREAIDVVRGEGPADLVENTLALGREMLLLGRASKTRGEADAKLRAALRDGSAARTMERMIAAQGGDARVVADTRRLPAAPVIAEARAAKGGYVTNIDALEIGHCAVEMGAGRLRAEDKIDPAVGIEILAKPGDAVARGEPLARLHLRGDNPELGHRVAKAFAIGPRRPRAAPLVIARITANSRG

Samples

Sample ID Description Type Environment
1 2690315857 Rheinheimera sp. EpRS3 Isolate Unclassified
2 2831905167 Ammoniphilus oxalaticus RAOx-1 Isolate Rhizosphere
3 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
4 2919688452 Pararheinheimera soli 4138 Isolate Unclassified
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
12 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
35 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
36 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
37 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
47 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
48 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
72 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
73 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
74 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
75 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
76 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
77 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
78 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
79 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
80 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
81 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
85 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
86 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
87 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
88 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
89 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
90 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
91 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
92 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
95 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
96 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
97 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
98 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
99 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
100 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
103 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
104 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
105 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
106 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
107 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
108 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
109 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
110 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
111 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
112 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
113 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
114 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
115 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
116 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
117 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
118 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
119 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
120 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
121 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
122 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
123 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
124 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
125 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
126 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
127 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
128 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
129 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
130 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
131 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
135 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
136 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
137 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
138 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
139 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
140 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
141 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
142 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
143 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
144 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
145 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
146 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
147 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
148 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
149 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
150 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.6
Metatranscriptomes 0
Isolates 2.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.44
Nodule 0
Rhizoplane 6.73
Rhizosphere 75.96
Stem 0
Stem Tuber 0
Unclassified 15.87

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065704_10079342 3300005289 Bacteria 4190
2 Ga0070658_10008656 3300005327 Bacteria 8174
3 Ga0070676_10014987 3300005328 Bacteria 4268
4 Ga0070683_100074997 3300005329 Bacteria 3160
5 Ga0070680_100079819 3300005336 Bacteria 2697
6 Ga0070689_100009113 3300005340 Bacteria 7026
7 Ga0070691_10016961 3300005341 Bacteria 3350
8 Ga0070674_100066864 3300005356 Bacteria 2527
9 Ga0070688_100005068 3300005365 Bacteria 6906
10 Ga0070703_10009104 3300005406 Bacteria 2800
11 Ga0070708_100034769 3300005445 Bacteria 4386
12 Ga0070678_100075117 3300005456 Bacteria 2542
13 Ga0068867_100028303 3300005459 Bacteria 4035
14 Ga0068867_100160007 3300005459 Bacteria 1775
15 Ga0070706_100002709 3300005467 Bacteria 17729
16 Ga0070707_100000649 3300005468 Bacteria 34773
17 Ga0070698_100027441 3300005471 Bacteria 5922
18 Ga0070699_100005643 3300005518 Bacteria 10962
19 Ga0070699_100007274 3300005518 Bacteria 9636
20 Ga0070697_100019468 3300005536 Bacteria 5362
21 Ga0070697_100027804 3300005536 Bacteria 4526
22 Ga0070696_100022129 3300005546 Bacteria 4317
23 Ga0070665_100002327 3300005548 Bacteria 21088
24 Ga0070704_100021571 3300005549 Bacteria 4179
25 Ga0068855_100000584 3300005563 Bacteria 44856
26 Ga0068855_100006333 3300005563 Bacteria 14423
27 Ga0068854_100000001 3300005578 Bacteria 608908
28 Ga0068856_100012427 3300005614 Bacteria 8243
29 Ga0068864_100007404 3300005618 Bacteria 9035
30 Ga0068866_10022398 3300005718 Bacteria 2924
31 Ga0068861_100045520 3300005719 Bacteria 3304
32 Ga0068863_100096693 3300005841 Bacteria 2804
33 Ga0068858_100032163 3300005842 Bacteria 4873
34 Ga0081538_10000178 3300005981 Bacteria 69139
35 Ga0081539_10000814 3300005985 Bacteria 60530
36 Ga0070717_10011752 3300006028 Bacteria 6662
37 Ga0070716_100056486 3300006173 Bacteria 2251
38 Ga0075428_100003192 3300006844 Bacteria 17928
39 Ga0075428_100019527 3300006844 Bacteria 7499
40 Ga0075428_100105205 3300006844 Bacteria 3078
41 Ga0075428_100245778 3300006844 Bacteria 1929
42 Ga0075430_100027364 3300006846 Bacteria 4845
43 Ga0075430_100133046 3300006846 Bacteria 2073
44 Ga0075431_100112668 3300006847 Bacteria 2807
45 Ga0075429_100086121 3300006880 Bacteria 2739
46 Ga0105240_10236114 3300009093 Bacteria 2122
47 Ga0111539_10001112 3300009094 Bacteria 35521
48 Ga0111539_10025005 3300009094 Bacteria 7318
49 Ga0111539_10029800 3300009094 Bacteria 6642
50 Ga0105245_10017529 3300009098 Bacteria 6250
51 Ga0114129_10152732 3300009147 Bacteria 3159
52 Ga0105243_10033279 3300009148 Bacteria 3986
53 Ga0105242_10001929 3300009176 Bacteria 16307
54 Ga0105248_10080351 3300009177 Bacteria 3664
55 Ga0163163_10003346 3300014325 Bacteria 13602
56 Ga0163163_10322987 3300014325 Bacteria 1597
57 Ga0157376_10030031 3300014969 Bacteria 4334
58 Ga0213876_10000282 3300021384 Bacteria 46388
59 Ga0213876_10001157 3300021384 Bacteria 16666
60 Ga0213876_10034480 3300021384 Bacteria 2669
61 Ga0207645_10023108 3300025907 Bacteria 4041
62 Ga0207684_10003206 3300025910 Bacteria 16059
63 Ga0207695_10115545 3300025913 Bacteria 2658
64 Ga0207649_10084838 3300025920 Bacteria 2060
65 Ga0207646_10003904 3300025922 Bacteria 16550
66 Ga0207646_10054192 3300025922 Bacteria 3588
67 Ga0207687_10012209 3300025927 Bacteria 5618
68 Ga0207670_10034015 3300025936 Bacteria 3289
69 Ga0207665_10115760 3300025939 Bacteria 1889
70 Ga0207711_10117698 3300025941 Bacteria 2370
71 Ga0207667_10000239 3300025949 Bacteria 76776
72 Ga0207667_10003140 3300025949 Bacteria 20452
73 Ga0207640_10000003 3300025981 Bacteria 505282
74 Ga0207703_10001320 3300026035 Bacteria 22784
75 Ga0207641_10167574 3300026088 Bacteria 2002
76 Ga0207648_10008077 3300026089 Bacteria 10252
77 Ga0207676_10115847 3300026095 Bacteria 2251
78 Ga0207683_10009892 3300026121 Bacteria 8130
79 Ga0207428_10001673 3300027907 Bacteria 22926
80 Ga0207428_10050054 3300027907 Bacteria 3343
81 Ga0268266_10000398 3300028379 Bacteria 65855
82 Ga0268264_10110033 3300028381 Bacteria 2412
83 Ga0265334_10000407 3300028573 Bacteria 22621
84 Ga0265338_10013182 3300028800 Bacteria 9356
85 Ga0265339_10001093 3300031249 Bacteria 20571
86 Ga0265327_10003046 3300031251 Bacteria 16584
87 Ga0265316_10002906 3300031344 Bacteria 17531
88 Ga0307513_10015270 3300031456 Bacteria 9317
89 Ga0265314_10000001 3300031711 Bacteria 3792860
90 Ga0316576_10006434 3300031727 Bacteria 7313
91 Ga0316576_10010741 3300031727 Bacteria 5964
92 Ga0316576_10066860 3300031727 Bacteria 2645
93 Ga0316578_10008053 3300031728 Bacteria 5332
94 Ga0316578_10008736 3300031728 Bacteria 5173
95 Ga0316578_10087399 3300031728 Bacteria 1859
96 Ga0307406_10006247 3300031901 Bacteria 6563
97 Ga0307406_10025638 3300031901 Bacteria 3531
98 Ga0307412_10001972 3300031911 Bacteria 11368
99 Ga0307412_10049189 3300031911 Bacteria 2777
100 Ga0307409_100031861 3300031995 Bacteria 3813
101 Ga0307416_100221718 3300032002 Bacteria 1814
102 Ga0307416_100259841 3300032002 Bacteria 1696
103 Ga0307415_100024567 3300032126 Bacteria 3764
104 Ga0307415_100200675 3300032126 Bacteria 1582
105 Ga0307507_10056132 3300033179 Bacteria 3725
106 Ga0373954_0003541 3300035118 Bacteria 6637
107 Ga0373956_0000114 3300035119 Bacteria 27793
108 Ga0373931_0109307 3300035691 Bacteria 1566
109 Ga0373927_0000101 3300035695 Bacteria 64704
110 Ga0373933_0000526 3300035724 Bacteria 23866
111 Ga0373933_0003648 3300035724 Bacteria 8528
112 Ga0316584_0109075 3300036712 Bacteria 2071
113 Ga0373925_0160342 3300037068 Bacteria 1771
114 Ga0395900_0085530 3300037418 Bacteria 3241
115 Ga0395905_0139542 3300037471 Bacteria 2281
116 Ga0400489_09279 3300039093 Bacteria 2262
117 Ga0400489_58973 3300039093 Bacteria 12234
118 Ga0436365_0523412 3300039437 Bacteria 11380
119 Ga0436365_0740107 3300039437 Bacteria 83165
120 Ga0436365_1009534 3300039437 Bacteria 67843
121 Ga0466966_0070872 3300044684 Bacteria 2184
122 Ga0466963_0009860 3300044694 Bacteria 5765
123 Ga0466963_0038917 3300044694 Bacteria 3112
124 Ga0466963_0149973 3300044694 Bacteria 1618
125 Ga0466957_0110405 3300044842 Bacteria 1743
126 Ga0466959_0094283 3300045049 Bacteria 2147
127 Ga0451576_0133088 3300045051 Bacteria 2592
128 Ga0466958_0017657 3300045836 Bacteria 4130
129 Ga0466967_0003061 3300045976 Bacteria 10734
130 Ga0466967_0185016 3300045976 Bacteria 1967
131 Ga0495629_0099145 3300046459 Bacteria 2033
132 Ga0495641_0032789 3300046461 Bacteria 2470
133 Ga0495651_0035723 3300046462 Bacteria 3869
134 Ga0495582_0003060 3300046473 Bacteria 9370
135 Ga0495596_0024267 3300046500 Bacteria 2457
136 Ga0495652_0093252 3300046529 Bacteria 2459
137 Ga0495634_0059155 3300046642 Bacteria 2553
138 Ga0495599_0016394 3300046678 Bacteria 4600
139 Ga0496102_0193175 3300048905 Bacteria 1918
140 Ga0496102_0298771 3300048905 Bacteria 1517
141 Ga0496104_0152525 3300048907 Bacteria 2217
142 Ga0496105_0018437 3300048908 Bacteria 5609
143 Ga0496108_0017341 3300048911 Bacteria 5889
144 Ga0496109_0006289 3300048912 Bacteria 9994
145 Ga0496109_0028826 3300048912 Bacteria 4969
146 Ga0496109_0181798 3300048912 Bacteria 1975
147 Ga0496111_0017746 3300048914 Bacteria 4921
148 Ga0496112_0009989 3300048915 Bacteria 8590
149 Ga0496113_0031005 3300048916 Bacteria 3875
150 Ga0496113_0038999 3300048916 Bacteria 3495
151 Ga0496114_0062547 3300048917 Bacteria 3115
152 Ga0496115_0005883 3300048918 Bacteria 8941
153 Ga0496116_0049907 3300048919 Bacteria 2793
154 Ga0496117_0001272 3300048920 Bacteria 37412
155 Ga0496118_0012903 3300048921 Bacteria 7960
156 Ga0496118_0099637 3300048921 Bacteria 1968
157 Ga0496119_0000003 3300048922 Bacteria 550563
158 Ga0496119_0007946 3300048922 Bacteria 9439
159 Ga0496119_0011402 3300048922 Bacteria 7364
160 Ga0496120_0000001 3300048923 Bacteria 630849
161 Ga0496120_0000312 3300048923 Bacteria 80729
162 Ga0496120_0045133 3300048923 Bacteria 2555
163 Ga0496122_0000015 3300048925 Bacteria 489028
164 Ga0496122_0001514 3300048925 Bacteria 37045
165 Ga0496122_0007165 3300048925 Bacteria 12494
166 Ga0496123_0001290 3300048926 Bacteria 35743
167 Ga0496123_0026165 3300048926 Bacteria 4379
168 Ga0496125_0000057 3300048928 Bacteria 266453
169 Ga0496126_0000008 3300048929 Bacteria 781752
170 Ga0496126_0000194 3300048929 Bacteria 136093
171 Ga0496126_0034167 3300048929 Bacteria 4778
172 Ga0496126_0164172 3300048929 Bacteria 1896
173 Ga0501034_0166508 3300049571 Bacteria 2173
174 Ga0501041_0039028 3300049577 Bacteria 2881
175 Ga0501041_0093523 3300049577 Bacteria 1857
176 Ga0501048_0073328 3300049582 Bacteria 2416
177 Ga0501072_0012383 3300049588 Bacteria 6517
178 Ga0501073_0030958 3300049589 Bacteria 3819
179 Ga0501073_0076796 3300049589 Bacteria 2324
180 Ga0501074_0019244 3300049590 Bacteria 4959
181 Ga0501075_0027672 3300049591 Bacteria 4180
182 Ga0501075_0081552 3300049591 Bacteria 2449
183 Ga0501075_0116733 3300049591 Bacteria 2029
184 Ga0501076_0083247 3300049592 Bacteria 2569
185 Ga0501076_0091906 3300049592 Bacteria 2441
186 Ga0501076_0093735 3300049592 Bacteria 2417
187 Ga0501080_0058681 3300049742 Bacteria 3582
188 Ga0501080_0085617 3300049742 Bacteria 2929
189 Ga0501080_0116992 3300049742 Bacteria 2471
190 Ga0501083_0037457 3300049744 Bacteria 3303
191 Ga0501045_0011401 3300049824 Bacteria 6243
192 nmdc:mga0qj67_22115_c1 3300050509 Bacteria 4881
193 nmdc:mga08y16_1924_c1 3300050511 Bacteria 21183
194 nmdc:mga08y16_80869_c1 3300050511 Bacteria 3388
195 nmdc:mga08y16_83448_c1 3300050511 Bacteria 3330
196 Ga0500643_000442 3300053087 Bacteria 31035
197 Ga0500618_002970 3300053125 Bacteria 6054
198 Ga0500636_0016105 3300053177 Bacteria 4406
199 Ga0501084_0000598 3300054114 Bacteria 27559
200 Ga0501084_0019370 3300054114 Bacteria 5669
201 Ga0501084_0174739 3300054114 Bacteria 1813
202 Ga0590075_009408 3300059424 Bacteria 2341
203 Ga0501082_0045242 3300060353 Bacteria 3796

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 8046991243 8046998849 351
2 3300026088 Ga0207641_10167574 Ga0207641_101675742 358
3 3300044694 Ga0466963_0149973 Ga0466963_0149973_386_1540 359
4 3300049592 Ga0501076_0083247 Ga0501076_0083247_13_1134 371
5 3300031911 Ga0307412_10001972 Ga0307412_100019729 386
6 3300045836 Ga0466958_0017657 Ga0466958_0017657_1869_3212 386
7 3300046459 Ga0495629_0099145 Ga0495629_0099145_482_1720 389
8 3300031727 Ga0316576_10066860 Ga0316576_100668602 391
9 3300031728 Ga0316578_10008736 Ga0316578_100087365 391
10 3300035691 Ga0373931_0109307 Ga0373931_0109307_14_1210 391
11 3300036712 Ga0316584_0109075 Ga0316584_0109075_85_1401 391
12 3300031728 Ga0316578_10087399 Ga0316578_100873992 392
13 3300049589 Ga0501073_0076796 Ga0501073_0076796_25_1221 396
14 3300006844 Ga0075428_100245778 Ga0075428_1002457782 398
15 3300014325 Ga0163163_10322987 Ga0163163_103229871 398
16 3300046462 Ga0495651_0035723 Ga0495651_0035723_32_1240 398
17 3300006846 Ga0075430_100133046 Ga0075430_1001330461 402
18 3300053125 Ga0500618_002970 Ga0500618_002970_639_1946 402
19 3300005518 Ga0070699_100007274 Ga0070699_1000072745 403
20 3300044694 Ga0466963_0038917 Ga0466963_0038917_709_2016 403
21 3300005329 Ga0070683_100074997 Ga0070683_1000749972 406
22 3300005563 Ga0068855_100000584 Ga0068855_10000058429 406
23 3300005563 Ga0068855_100006333 Ga0068855_1000063332 406
24 3300005578 Ga0068854_100000001 Ga0068854_100000001551 406
25 3300005614 Ga0068856_100012427 Ga0068856_1000124274 406
26 3300009093 Ga0105240_10236114 Ga0105240_102361142 406
27 3300025913 Ga0207695_10115545 Ga0207695_101155451 406
28 3300025920 Ga0207649_10084838 Ga0207649_100848381 406
29 3300025949 Ga0207667_10000239 Ga0207667_1000023932 406
30 3300025949 Ga0207667_10003140 Ga0207667_100031406 406
31 3300025981 Ga0207640_10000003 Ga0207640_10000003322 406
32 3300031901 Ga0307406_10025638 Ga0307406_100256382 406
33 3300031911 Ga0307412_10049189 Ga0307412_100491892 406
34 3300032002 Ga0307416_100259841 Ga0307416_1002598412 406
35 3300032126 Ga0307415_100024567 Ga0307415_1000245674 406
36 3300049744 Ga0501083_0037457 Ga0501083_0037457_1395_2687 410
37 3300054114 Ga0501084_0174739 Ga0501084_0174739_213_1505 410
38 3300039093 Ga0400489_58973 Ga0400489_58973_5823_7160 411
39 3300044694 Ga0466963_0009860 Ga0466963_0009860_3901_5208 411
40 3300028800 Ga0265338_10013182 Ga0265338_100131822 412
41 3300032002 Ga0307416_100221718 Ga0307416_1002217182 414
42 3300032126 Ga0307415_100200675 Ga0307415_1002006752 414
43 3300035695 Ga0373927_0000101 Ga0373927_0000101_8091_9398 415
44 3300046461 Ga0495641_0032789 Ga0495641_0032789_570_1838 416
45 3300046642 Ga0495634_0059155 Ga0495634_0059155_466_1734 416
46 3300006844 Ga0075428_100105205 Ga0075428_1001052052 417
47 3300046500 Ga0495596_0024267 Ga0495596_0024267_994_2313 417
48 3300005327 Ga0070658_10008656 Ga0070658_100086567 420
49 3300005328 Ga0070676_10014987 Ga0070676_100149872 420
50 3300005548 Ga0070665_100002327 Ga0070665_1000023273 420
51 3300006173 Ga0070716_100056486 Ga0070716_1000564862 420
52 3300025907 Ga0207645_10023108 Ga0207645_100231084 420
53 3300025939 Ga0207665_10115760 Ga0207665_101157602 420
54 3300028379 Ga0268266_10000398 Ga0268266_1000039819 420
55 3300048925 Ga0496122_0007165 Ga0496122_0007165_9152_10528 420
56 3300031251 Ga0265327_10003046 Ga0265327_100030464 422
57 iso_pu_bacteria 2690315857 2691332796 424
58 iso_pu_bacteria 2919534386 2919537923 424
59 3300028573 Ga0265334_10000407 Ga0265334_100004074 425
60 3300031995 Ga0307409_100031861 Ga0307409_1000318614 425
61 3300046529 Ga0495652_0093252 Ga0495652_0093252_564_1877 425
62 3300053177 Ga0500636_0016105 Ga0500636_0016105_2613_3923 425
63 3300054114 Ga0501084_0000598 Ga0501084_0000598_20448_21737 425
64 iso_pu_bacteria 2831905167 2831905233 425
65 3300005340 Ga0070689_100009113 Ga0070689_1000091137 426
66 3300005365 Ga0070688_100005068 Ga0070688_1000050682 426
67 3300005459 Ga0068867_100160007 Ga0068867_1001600072 426
68 3300005471 Ga0070698_100027441 Ga0070698_1000274412 426
69 3300005618 Ga0068864_100007404 Ga0068864_1000074046 426
70 3300005719 Ga0068861_100045520 Ga0068861_1000455202 426
71 3300005842 Ga0068858_100032163 Ga0068858_1000321634 426
72 3300009177 Ga0105248_10080351 Ga0105248_100803512 426
73 3300025936 Ga0207670_10034015 Ga0207670_100340152 426
74 3300025941 Ga0207711_10117698 Ga0207711_101176983 426
75 3300026035 Ga0207703_10001320 Ga0207703_1000132012 426
76 3300045976 Ga0466967_0003061 Ga0466967_0003061_1507_2814 426
77 3300045976 Ga0466967_0185016 Ga0466967_0185016_448_1755 426
78 iso_pu_bacteria 2919688452 2919691038 426
79 3300005981 Ga0081538_10000178 Ga0081538_1000017816 427
80 3300006844 Ga0075428_100019527 Ga0075428_1000195276 427
81 3300009147 Ga0114129_10152732 Ga0114129_101527323 427
82 3300049590 Ga0501074_0019244 Ga0501074_0019244_138_1433 427
83 3300006844 Ga0075428_100003192 Ga0075428_1000031929 428
84 3300009094 Ga0111539_10025005 Ga0111539_100250054 428
85 3300027907 Ga0207428_10050054 Ga0207428_100500542 428
86 3300031249 Ga0265339_10001093 Ga0265339_1000109316 428
87 3300031344 Ga0265316_10002906 Ga0265316_100029063 428
88 3300031711 Ga0265314_10000001 Ga0265314_100000011077 428
89 3300031901 Ga0307406_10006247 Ga0307406_100062477 428
90 3300033179 Ga0307507_10056132 Ga0307507_100561322 428
91 3300045051 Ga0451576_0133088 Ga0451576_0133088_1140_2447 428
92 3300046473 Ga0495582_0003060 Ga0495582_0003060_6947_8254 428
93 3300048907 Ga0496104_0152525 Ga0496104_0152525_110_1414 428
94 3300048912 Ga0496109_0181798 Ga0496109_0181798_159_1463 428
95 3300049577 Ga0501041_0093523 Ga0501041_0093523_431_1735 428
96 3300049589 Ga0501073_0030958 Ga0501073_0030958_732_2165 428
97 3300049591 Ga0501075_0081552 Ga0501075_0081552_623_1927 428
98 3300049591 Ga0501075_0116733 Ga0501075_0116733_263_1567 428
99 3300049592 Ga0501076_0093735 Ga0501076_0093735_664_2097 428
100 3300049742 Ga0501080_0085617 Ga0501080_0085617_182_1612 428
101 3300049742 Ga0501080_0116992 Ga0501080_0116992_796_2100 428
102 3300050511 nmdc:mga08y16_80869_c1 nmdc:mga08y16_80869_c1_833_2152 428
103 3300054114 Ga0501084_0019370 Ga0501084_0019370_3373_4806 428
104 3300005336 Ga0070680_100079819 Ga0070680_1000798193 429
105 3300005341 Ga0070691_10016961 Ga0070691_100169612 429
106 3300005356 Ga0070674_100066864 Ga0070674_1000668641 429
107 3300005456 Ga0070678_100075117 Ga0070678_1000751172 429
108 3300005459 Ga0068867_100028303 Ga0068867_1000283032 429
109 3300005467 Ga0070706_100002709 Ga0070706_1000027095 429
110 3300005468 Ga0070707_100000649 Ga0070707_10000064922 429
111 3300005518 Ga0070699_100005643 Ga0070699_1000056437 429
112 3300005536 Ga0070697_100019468 Ga0070697_1000194684 429
113 3300005546 Ga0070696_100022129 Ga0070696_1000221292 429
114 3300005549 Ga0070704_100021571 Ga0070704_1000215712 429
115 3300005718 Ga0068866_10022398 Ga0068866_100223982 429
116 3300005841 Ga0068863_100096693 Ga0068863_1000966933 429
117 3300006028 Ga0070717_10011752 Ga0070717_100117523 429
118 3300006846 Ga0075430_100027364 Ga0075430_1000273642 429
119 3300009148 Ga0105243_10033279 Ga0105243_100332792 429
120 3300009176 Ga0105242_10001929 Ga0105242_1000192920 429
121 3300025910 Ga0207684_10003206 Ga0207684_100032064 429
122 3300025922 Ga0207646_10003904 Ga0207646_100039044 429
123 3300026089 Ga0207648_10008077 Ga0207648_100080778 429
124 3300026121 Ga0207683_10009892 Ga0207683_100098928 429
125 3300031727 Ga0316576_10010741 Ga0316576_100107414 429
126 3300035118 Ga0373954_0003541 Ga0373954_0003541_543_1850 429
127 3300035119 Ga0373956_0000114 Ga0373956_0000114_17273_18580 429
128 3300035724 Ga0373933_0000526 Ga0373933_0000526_12778_14085 429
129 3300035724 Ga0373933_0003648 Ga0373933_0003648_3953_5260 429
130 3300039093 Ga0400489_09279 Ga0400489_09279_273_1589 429
131 3300044684 Ga0466966_0070872 Ga0466966_0070872_466_1773 429
132 3300044842 Ga0466957_0110405 Ga0466957_0110405_29_1336 429
133 3300045049 Ga0466959_0094283 Ga0466959_0094283_161_1468 429
134 3300048905 Ga0496102_0193175 Ga0496102_0193175_221_1540 429
135 3300048912 Ga0496109_0006289 Ga0496109_0006289_3608_4927 429
136 3300048916 Ga0496113_0038999 Ga0496113_0038999_2119_3438 429
137 3300049577 Ga0501041_0039028 Ga0501041_0039028_510_1817 429
138 3300049582 Ga0501048_0073328 Ga0501048_0073328_882_2189 429
139 3300049588 Ga0501072_0012383 Ga0501072_0012383_1587_2894 429
140 3300049591 Ga0501075_0027672 Ga0501075_0027672_121_1428 429
141 3300049592 Ga0501076_0091906 Ga0501076_0091906_430_1737 429
142 3300049742 Ga0501080_0058681 Ga0501080_0058681_2187_3494 429
143 3300049824 Ga0501045_0011401 Ga0501045_0011401_1144_2451 429
144 3300050509 nmdc:mga0qj67_22115_c1 nmdc:mga0qj67_22115_c1_263_1576 429
145 3300053087 Ga0500643_000442 Ga0500643_000442_6932_8254 429
146 3300005406 Ga0070703_10009104 Ga0070703_100091043 430
147 3300005536 Ga0070697_100027804 Ga0070697_1000278044 430
148 3300005985 Ga0081539_10000814 Ga0081539_1000081418 430
149 3300021384 Ga0213876_10000282 Ga0213876_1000028238 430
150 3300021384 Ga0213876_10001157 Ga0213876_1000115714 430
151 3300021384 Ga0213876_10034480 Ga0213876_100344803 430
152 3300028381 Ga0268264_10110033 Ga0268264_101100332 430
153 3300031456 Ga0307513_10015270 Ga0307513_100152708 430
154 3300031727 Ga0316576_10006434 Ga0316576_100064342 430
155 3300031728 Ga0316578_10008053 Ga0316578_100080532 430
156 3300037068 Ga0373925_0160342 Ga0373925_0160342_437_1750 430
157 3300037418 Ga0395900_0085530 Ga0395900_0085530_1297_2619 430
158 3300039437 Ga0436365_0523412 Ga0436365_0523412_7921_9243 430
159 3300039437 Ga0436365_0740107 Ga0436365_0740107_4589_5911 430
160 3300039437 Ga0436365_1009534 Ga0436365_1009534_2270_3592 430
161 3300049571 Ga0501034_0166508 Ga0501034_0166508_252_1565 430
162 3300060353 Ga0501082_0045242 Ga0501082_0045242_1379_2689 430
163 3300009094 Ga0111539_10029800 Ga0111539_100298006 431
164 3300014325 Ga0163163_10003346 Ga0163163_100033469 431
165 3300026095 Ga0207676_10115847 Ga0207676_101158472 431
166 3300048905 Ga0496102_0298771 Ga0496102_0298771_99_1421 431
167 3300048908 Ga0496105_0018437 Ga0496105_0018437_3633_4955 431
168 3300048911 Ga0496108_0017341 Ga0496108_0017341_1652_2974 431
169 3300048912 Ga0496109_0028826 Ga0496109_0028826_734_2056 431
170 3300048914 Ga0496111_0017746 Ga0496111_0017746_655_1977 431
171 3300048915 Ga0496112_0009989 Ga0496112_0009989_655_1977 431
172 3300048916 Ga0496113_0031005 Ga0496113_0031005_1899_3221 431
173 3300048917 Ga0496114_0062547 Ga0496114_0062547_129_1451 431
174 3300048918 Ga0496115_0005883 Ga0496115_0005883_6544_7866 431
175 3300050511 nmdc:mga08y16_83448_c1 nmdc:mga08y16_83448_c1_530_1843 431
176 3300009094 Ga0111539_10001112 Ga0111539_1000111223 432
177 3300025922 Ga0207646_10054192 Ga0207646_100541923 432
178 3300027907 Ga0207428_10001673 Ga0207428_100016736 432
179 3300050511 nmdc:mga08y16_1924_c1 nmdc:mga08y16_1924_c1_1805_3121 432
180 3300006847 Ga0075431_100112668 Ga0075431_1001126682 433
181 3300006880 Ga0075429_100086121 Ga0075429_1000861213 433
182 3300059424 Ga0590075_009408 Ga0590075_009408_422_1744 433
183 3300005445 Ga0070708_100034769 Ga0070708_1000347694 434
184 3300025927 Ga0207687_10012209 Ga0207687_100122093 434
185 3300048919 Ga0496116_0049907 Ga0496116_0049907_810_2135 435
186 3300048920 Ga0496117_0001272 Ga0496117_0001272_26673_27992 435
187 3300048921 Ga0496118_0012903 Ga0496118_0012903_525_1844 435
188 3300048921 Ga0496118_0099637 Ga0496118_0099637_351_1670 435
189 3300048922 Ga0496119_0000003 Ga0496119_0000003_492863_494182 435
190 3300048922 Ga0496119_0007946 Ga0496119_0007946_2573_3892 435
191 3300048922 Ga0496119_0011402 Ga0496119_0011402_4671_5990 435
192 3300048923 Ga0496120_0000001 Ga0496120_0000001_135656_136975 435
193 3300048923 Ga0496120_0000312 Ga0496120_0000312_38888_40207 435
194 3300048923 Ga0496120_0045133 Ga0496120_0045133_591_1910 435
195 3300048925 Ga0496122_0000015 Ga0496122_0000015_137950_139299 435
196 3300048925 Ga0496122_0001514 Ga0496122_0001514_14164_15483 435
197 3300048926 Ga0496123_0001290 Ga0496123_0001290_20485_21804 435
198 3300048926 Ga0496123_0026165 Ga0496123_0026165_1494_2843 435
199 3300048928 Ga0496125_0000057 Ga0496125_0000057_78063_79382 435
200 3300048929 Ga0496126_0000008 Ga0496126_0000008_664817_666166 435
201 3300048929 Ga0496126_0000194 Ga0496126_0000194_62568_63887 435
202 3300048929 Ga0496126_0034167 Ga0496126_0034167_1536_2855 435
203 3300048929 Ga0496126_0164172 Ga0496126_0164172_242_1561 435
204 3300009098 Ga0105245_10017529 Ga0105245_100175292 436
205 3300014969 Ga0157376_10030031 Ga0157376_100300313 436
206 3300037471 Ga0395905_0139542 Ga0395905_0139542_612_1964 436
207 3300046678 Ga0495599_0016394 Ga0495599_0016394_2330_3664 436
208 3300005289 Ga0065704_10079342 Ga0065704_100793422 438

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00591

Glycos_transf_3

Glycosyl transferase family, a/b domain

121

352

0.98

PF02885

Glycos_trans_3N

Glycosyl transferase family, helical bundle domain

50

112

0.98

PF07831

PYNP_C

Pyrimidine nucleoside phosphorylase C-terminal domain

391

463

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
1brw-assembly1.cif.gz_B the crystal structure of pyrimidine nucleoside phosphorylase in a closed conformation 0.9653 2 428
2wk6-assembly1.cif.gz_B structural features of native human thymidine phosphorylase and in complex with 5-iodouracil 0.9586 3 430
1brw-assembly1.cif.gz_B the crystal structure of pyrimidine nucleoside phosphorylase in a closed conformation 0.9501 2 428
2j0f-assembly1.cif.gz_C structural basis for non-competitive product inhibition in human thymidine phosphorylase: implication for drug design 0.9433 3 431
2wk5-assembly3.cif.gz_C structural features of native human thymidine phosphorylase and in complex with 5-iodouracil 0.9432 3 431
ID Description Score Start End Superfamily
af_P9WFS1_8_72_1.20.970.10 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.9797 1 62 1.20.970.10
2j0fB01 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.9761 3 63 1.20.970.10
af_Q2FWC1_1_67_1.20.970.10 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.9742 2 63 1.20.970.10
1uouA01 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.971 3 63 1.20.970.10
2wk5C01 Mainly Alpha;Up-down Bundle;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3;Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.969 3 63 1.20.970.10
ID Description Score Start End GO Terms
AF-A0A0S7WJ45-F1-model_v4 Thymidine phosphorylase 0.9902 2 327 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032
AF-X0REL3-F1-model_v4 Pyrimidine nucleoside phosphorylase C-terminal domain-containing protein 0.99 233 431 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032
AF-A0A7Y5GG78-F1-model_v4 Thymidine phosphorylase (EC 2.4.2.4) 0.9879 2 430 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032
AF-A0A7Y8LIG3-F1-model_v4 Thymidine phosphorylase (EC 2.4.2.4) 0.9872 2 327 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032
AF-A0A7V4HBZ8-F1-model_v4 Thymidine phosphorylase (EC 2.4.2.4) 0.9856 2 337 GO:0004645
GO:0005829
GO:0006206
GO:0006213
GO:0009032

Feature Viewer

pLDDT pTM Quality
93.44 0.92 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar

Map