F317572

General Info

Members Datasets Scaffolds Average Seq Length
208 143 417 216

Family's Representative Sequence

Representative Sequence 3300005618|Ga0068864_100215929|Ga0068864_1002159293
Length 217
Sequence MRIIVTGVTGMVGEGVLLQCLESPDVEKVLAVSRKPVNQSHPKLEQLQVADFQKLGDVEAQLTGYDGCFYCAGVSSVGMSEADYTAISYDTPLAFATTLARLNPNLVLTYVTGSHTDENGKRMWQRVKGRAESALAKLPLKGVYNFRPGLMTPKRGQKHLKTGYKIALVFAPLLKLFFPALTLEQVGKAMLQCVKVGAPKTIVEIPDIRELAAAYKG

Samples

Sample ID Description Type Environment
1 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
21 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
34 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
38 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
45 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
46 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
89 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
90 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
91 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
92 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
93 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
94 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
95 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
96 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
97 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
100 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
101 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
102 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
103 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
104 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
105 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
106 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
107 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
108 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
111 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
112 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
113 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
114 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
115 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
116 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
117 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
118 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
119 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
120 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
122 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
123 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
124 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
125 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
126 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
127 3300049851 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought Metagenome Rhizosphere
128 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
131 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
132 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
133 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
134 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
135 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
136 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
137 2772190705 Chryseobacterium contaminans C-26 Isolate Rhizosphere
138 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
139 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
140 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
141 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
142 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
143 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.71
Metatranscriptomes 0
Isolates 5.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.92
Nodule 0
Rhizoplane 2.88
Rhizosphere 88.46
Stem 0
Stem Tuber 0
Unclassified 12.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068864_100215929 3300005618 Unclassified 1768
2 rootH2_10030671 3300003320 Bacteria 4714
3 rootL2_10011419 3300003322 Bacteria 9963
4 rootH1_10003484 3300003316 Bacteria 3193
5 rootH1_10003484 3300003323 Bacteria 16671
6 rootH1_10078183 3300003323 Bacteria 9630
7 rootH1_10153178 3300003323 Bacteria 3142
8 Ga0065712_10121645 3300005290 Bacteria 1662
9 Ga0070658_10085589 3300005327 Bacteria 2593
10 Ga0070683_100070549 3300005329 Bacteria 3259
11 Ga0070683_100110287 3300005329 Bacteria 2595
12 Ga0070670_100338437 3300005331 Bacteria 1320
13 Ga0068869_100199562 3300005334 Unclassified 1577
14 Ga0070680_100003917 3300005336 Bacteria 11128
15 Ga0070680_100055492 3300005336 Bacteria 3238
16 Ga0070680_100083394 3300005336 Bacteria 2640
17 Ga0070682_100009743 3300005337 Bacteria 5440
18 Ga0070660_100053640 3300005339 Bacteria 3110
19 Ga0070689_100031177 3300005340 Bacteria 4051
20 Ga0070668_100040885 3300005347 Bacteria 3550
21 Ga0070671_100222025 3300005355 Bacteria 1603
22 Ga0070659_100007129 3300005366 Bacteria 8109
23 Ga0070678_100000444 3300005456 Bacteria 19607
24 Ga0070678_100617560 3300005456 Bacteria 969
25 Ga0070681_10084750 3300005458 Bacteria 3121
26 Ga0070681_10086812 3300005458 Bacteria 3082
27 Ga0070681_10108664 3300005458 Bacteria 2714
28 Ga0068867_100143781 3300005459 Unclassified 1867
29 Ga0070679_100010922 3300005530 Bacteria 8629
30 Ga0070679_100033600 3300005530 Bacteria 5079
31 Ga0070679_100039443 3300005530 Bacteria 4693
32 Ga0070679_100205595 3300005530 Bacteria 1933
33 Ga0070684_100024422 3300005535 Bacteria 5071
34 Ga0070684_100165361 3300005535 Bacteria 2008
35 Ga0070684_100218824 3300005535 Bacteria 1737
36 Ga0070697_100722794 3300005536 Unclassified 879
37 Ga0068853_100007934 3300005539 Bacteria 8512
38 Ga0068853_100043853 3300005539 Bacteria 3827
39 Ga0070672_100001018 3300005543 Bacteria 17020
40 Ga0070665_100182240 3300005548 Bacteria 2101
41 Ga0070665_100335135 3300005548 Bacteria 1517
42 Ga0070665_100714749 3300005548 Bacteria 1015
43 Ga0068855_100002367 3300005563 Bacteria 23245
44 Ga0068855_100146661 3300005563 Bacteria 2686
45 Ga0068855_100250953 3300005563 Bacteria 1974
46 Ga0068855_100300887 3300005563 Bacteria 1776
47 Ga0068854_100105747 3300005578 Bacteria 2116
48 Ga0068854_100311707 3300005578 Unclassified 1276
49 Ga0068856_100159507 3300005614 Bacteria 2266
50 Ga0068856_100207780 3300005614 Unclassified 1972
51 Ga0068856_100209605 3300005614 Bacteria 1964
52 Ga0070702_100443895 3300005615 Unclassified 939
53 Ga0068852_100669206 3300005616 Bacteria 1047
54 Ga0068864_100065860 3300005618 Bacteria 3143
55 Ga0068861_100029278 3300005719 Bacteria 4028
56 Ga0081539_10001239 3300005985 Bacteria 45441
57 Ga0075366_10095107 3300006195 Unclassified 1786
58 Ga0068871_100626135 3300006358 Bacteria 980
59 Ga0068865_100020236 3300006881 Bacteria 4316
60 Ga0068865_100120134 3300006881 Bacteria 1952
61 Ga0068865_100592780 3300006881 Unclassified 936
62 Ga0075435_100031337 3300007076 Bacteria 4187
63 Ga0105240_10194175 3300009093 Bacteria 2385
64 Ga0111539_10501963 3300009094 Bacteria 1413
65 Ga0105245_10000009 3300009098 Bacteria 279713
66 Ga0105245_10031553 3300009098 Bacteria 4689
67 Ga0105248_10327166 3300009177 Bacteria 1726
68 Ga0105237_10018604 3300009545 Bacteria 7188
69 Ga0105249_10239932 3300009553 Bacteria 1792
70 Ga0105239_10001435 3300010375 Bacteria 31777
71 Ga0105239_10032250 3300010375 Bacteria 5758
72 Ga0157373_10047281 3300013100 Bacteria 3069
73 Ga0157371_10199403 3300013102 Bacteria 1434
74 Ga0157370_10167884 3300013104 Bacteria 2040
75 Ga0157374_10017087 3300013296 Bacteria 6387
76 Ga0157374_10027774 3300013296 Bacteria 5109
77 Ga0157374_10962478 3300013296 Bacteria 872
78 Ga0157378_10463161 3300013297 Bacteria 1260
79 Ga0157372_10193556 3300013307 Bacteria 2355
80 Ga0157372_10267079 3300013307 Bacteria 1987
81 Ga0157372_10303814 3300013307 Bacteria 1856
82 Ga0163163_10011907 3300014325 Bacteria 7913
83 Ga0157376_10010327 3300014969 Bacteria 6823
84 Ga0157376_10035688 3300014969 Bacteria 4023
85 Ga0157376_10183176 3300014969 Bacteria 1916
86 Ga0157376_10383340 3300014969 Bacteria 1355
87 Ga0163161_10112099 3300017792 Bacteria 2040
88 Ga0163161_10118694 3300017792 Bacteria 1985
89 Ga0207656_10000250 3300025321 Bacteria 18780
90 Ga0207647_10090808 3300025904 Bacteria 1821
91 Ga0207705_10217934 3300025909 Bacteria 1449
92 Ga0207707_10060209 3300025912 Bacteria 3304
93 Ga0207707_10085531 3300025912 Bacteria 2755
94 Ga0207695_10192459 3300025913 Bacteria 1957
95 Ga0207671_10002593 3300025914 Bacteria 19092
96 Ga0207671_10364497 3300025914 Unclassified 1147
97 Ga0207660_10057028 3300025917 Bacteria 2797
98 Ga0207660_10173676 3300025917 Bacteria 1669
99 Ga0207660_10275672 3300025917 Bacteria 1333
100 Ga0207662_10167194 3300025918 Unclassified 1409
101 Ga0207657_10012327 3300025919 Bacteria 8448
102 Ga0207652_10010345 3300025921 Bacteria 7515
103 Ga0207652_10034173 3300025921 Bacteria 4284
104 Ga0207652_10156020 3300025921 Bacteria 2045
105 Ga0207652_10317605 3300025921 Bacteria 1406
106 Ga0207652_10584087 3300025921 Bacteria 1003
107 Ga0207650_10006976 3300025925 Bacteria 7702
108 Ga0207659_10316833 3300025926 Bacteria 1285
109 Ga0207687_10000045 3300025927 Bacteria 99967
110 Ga0207687_10121976 3300025927 Bacteria 1950
111 Ga0207644_10640587 3300025931 Unclassified 884
112 Ga0207690_10214528 3300025932 Bacteria 1469
113 Ga0207670_10012426 3300025936 Bacteria 4983
114 Ga0207704_10027296 3300025938 Bacteria 3148
115 Ga0207691_10003275 3300025940 Bacteria 15770
116 Ga0207691_10582015 3300025940 Unclassified 948
117 Ga0207689_10009528 3300025942 Bacteria 8381
118 Ga0207661_10025835 3300025944 Bacteria 4469
119 Ga0207667_10008067 3300025949 Bacteria 12548
120 Ga0207667_10064960 3300025949 Bacteria 3807
121 Ga0207667_10128578 3300025949 Bacteria 2609
122 Ga0207667_10218368 3300025949 Bacteria 1953
123 Ga0207712_10165693 3300025961 Bacteria 1722
124 Ga0207668_10167642 3300025972 Unclassified 1719
125 Ga0207640_10110032 3300025981 Bacteria 1951
126 Ga0207640_10369076 3300025981 Bacteria 1159
127 Ga0207639_10000662 3300026041 Bacteria 23754
128 Ga0207639_10401797 3300026041 Unclassified 1234
129 Ga0207708_10414758 3300026075 Bacteria 1116
130 Ga0207702_10119723 3300026078 Bacteria 2354
131 Ga0207702_10126268 3300026078 Bacteria 2297
132 Ga0207702_10284571 3300026078 Bacteria 1564
133 Ga0207641_10460916 3300026088 Bacteria 1230
134 Ga0207648_10506114 3300026089 Bacteria 1105
135 Ga0207648_10854825 3300026089 Unclassified 849
136 Ga0207676_10059377 3300026095 Bacteria 3020
137 Ga0207676_10816073 3300026095 Bacteria 911
138 Ga0207674_10125514 3300026116 Bacteria 2532
139 Ga0207674_10291111 3300026116 Unclassified 1582
140 Ga0207674_10316703 3300026116 Bacteria 1509
141 Ga0207674_10390146 3300026116 Bacteria 1346
142 Ga0207675_100007820 3300026118 Bacteria 10089
143 Ga0207675_100356396 3300026118 Bacteria 1434
144 Ga0207683_10069894 3300026121 Bacteria 3101
145 Ga0207683_10104196 3300026121 Bacteria 2535
146 Ga0207698_10186668 3300026142 Bacteria 1842
147 Ga0207698_10416074 3300026142 Bacteria 1289
148 Ga0268266_10552225 3300028379 Bacteria 1104
149 Ga0265332_10048775 3300031238 Bacteria 1821
150 Ga0265340_10174923 3300031247 Bacteria 972
151 Ga0307513_10047283 3300031456 Unclassified 4682
152 Ga0307513_10589016 3300031456 Bacteria 822
153 Ga0307509_10036181 3300031507 Bacteria 5410
154 Ga0307509_10046741 3300031507 Bacteria 4659
155 Ga0265342_10308675 3300031712 Bacteria 831
156 Ga0307412_10015562 3300031911 Bacteria 4514
157 Ga0307414_10065417 3300032004 Bacteria 2594
158 Ga0373943_0175741 3300035170 Unclassified 1174
159 Ga0373931_0306648 3300035691 Unclassified 982
160 Ga0373925_0488654 3300037068 Unclassified 1010
161 Ga0395905_0782818 3300037471 Bacteria 857
162 Ga0436363_1124965 3300039450 Bacteria 1398
163 Ga0439465_0000842 3300041413 Bacteria 9660
164 Ga0451807_0668973 3300041486 Unclassified 1012
165 Ga0466959_0283349 3300045049 Bacteria 1137
166 Ga0495650_0083967 3300046471 Unclassified 1223
167 Ga0495632_0004912 3300046519 Bacteria 8963
168 Ga0495643_0226800 3300046522 Bacteria 883
169 Ga0495663_0000037 3300046525 Bacteria 70080
170 Ga0495609_0000452 3300046538 Bacteria 33477
171 Ga0495633_0004583 3300046558 Bacteria 8717
172 Ga0495625_0000825 3300046660 Bacteria 42700
173 Ga0495613_0013368 3300046689 Bacteria 6097
174 Ga0495581_0111622 3300047315 Bacteria 1590
175 Ga0495604_0457466 3300047317 Unclassified 833
176 Ga0495680_0091318 3300047322 Bacteria 2283
177 Ga0495686_0000079 3300047472 Bacteria 202668
178 Ga0495686_0001625 3300047472 Bacteria 23521
179 Ga0495602_0302518 3300048088 Bacteria 1170
180 Ga0496105_0044399 3300048908 Bacteria 3666
181 Ga0496105_0476303 3300048908 Bacteria 983
182 Ga0496114_0339362 3300048917 Bacteria 1328
183 Ga0496115_0055831 3300048918 Bacteria 3173
184 Ga0496115_0126561 3300048918 Bacteria 2105
185 Ga0495682_0003571 3300049460 Bacteria 6873
186 Ga0501032_0008811 3300049569 Bacteria 7339
187 Ga0501070_0235290 3300049586 Bacteria 1500
188 Ga0501073_0042115 3300049589 Bacteria 3224
189 Ga0501242_000052 3300049674 Bacteria 7216
190 Ga0501241_000018 3300049758 Bacteria 95195
191 Ga0501266_006551 3300049763 Bacteria 1448
192 Ga0501269_000014 3300049766 Bacteria 59850
193 Ga0501212_020044 3300049851 Bacteria 1028
194 nmdc:mga0k408_90381_c1 3300050493 Unclassified 1798
195 nmdc:mga0rr50_250576_c1 3300050513 Bacteria 1471
196 Ga0500644_0052277 3300053088 Bacteria 1406
197 Ga0500622_0028629 3300053156 Bacteria 2932
198 Ga0501082_0451867 3300060353 Unclassified 1123
199 2588233041 2585428187 Bacteria 4629388
200 2590612080 2588254257 Bacteria 5436094
201 2729199894 2728369107 Bacteria 5082720
202 2740058920 2739367874 Bacteria 4872888
203 2772604753 2772190705 Bacteria 4666226
204 2775672064 2775506739 Bacteria 3855222
205 2842725585 2842722452 Bacteria 6263924
206 2852630472 2852627209 Bacteria 5896285
207 2919098500 2919097161 Bacteria 3860339
208 2945926119 2945924605 Bacteria 4296724
209 2965322879 2965320100 Bacteria 3975600
210 Ga0068864_100215929
211 rootH2_10030671
212 rootL2_10011419
213 rootH1_10003484
214 rootH1_10078183
215 rootH1_10153178
216 Ga0065712_10121645
217 Ga0070658_10085589
218 Ga0070683_100070549
219 Ga0070683_100110287
220 Ga0070670_100338437
221 Ga0068869_100199562
222 Ga0070680_100003917
223 Ga0070680_100055492
224 Ga0070680_100083394
225 Ga0070682_100009743
226 Ga0070660_100053640
227 Ga0070689_100031177
228 Ga0070668_100040885
229 Ga0070671_100222025
230 Ga0070659_100007129
231 Ga0070678_100000444
232 Ga0070678_100617560
233 Ga0070681_10084750
234 Ga0070681_10086812
235 Ga0070681_10108664
236 Ga0068867_100143781
237 Ga0070679_100010922
238 Ga0070679_100033600
239 Ga0070679_100039443
240 Ga0070679_100205595
241 Ga0070684_100024422
242 Ga0070684_100165361
243 Ga0070684_100218824
244 Ga0070697_100722794
245 Ga0068853_100007934
246 Ga0068853_100043853
247 Ga0070672_100001018
248 Ga0070665_100182240
249 Ga0070665_100335135
250 Ga0070665_100714749
251 Ga0068855_100002367
252 Ga0068855_100146661
253 Ga0068855_100250953
254 Ga0068855_100300887
255 Ga0068854_100105747
256 Ga0068854_100311707
257 Ga0068856_100159507
258 Ga0068856_100207780
259 Ga0068856_100209605
260 Ga0070702_100443895
261 Ga0068852_100669206
262 Ga0068864_100065860
263 Ga0068861_100029278
264 Ga0081539_10001239
265 Ga0075366_10095107
266 Ga0068871_100626135
267 Ga0068865_100020236
268 Ga0068865_100120134
269 Ga0068865_100592780
270 Ga0075435_100031337
271 Ga0105240_10194175
272 Ga0111539_10501963
273 Ga0105245_10000009
274 Ga0105245_10031553
275 Ga0105248_10327166
276 Ga0105237_10018604
277 Ga0105249_10239932
278 Ga0105239_10001435
279 Ga0105239_10032250
280 Ga0157373_10047281
281 Ga0157371_10199403
282 Ga0157370_10167884
283 Ga0157374_10017087
284 Ga0157374_10027774
285 Ga0157374_10962478
286 Ga0157378_10463161
287 Ga0157372_10193556
288 Ga0157372_10267079
289 Ga0157372_10303814
290 Ga0163163_10011907
291 Ga0157376_10010327
292 Ga0157376_10035688
293 Ga0157376_10183176
294 Ga0157376_10383340
295 Ga0163161_10112099
296 Ga0163161_10118694
297 Ga0207656_10000250
298 Ga0207647_10090808
299 Ga0207705_10217934
300 Ga0207707_10060209
301 Ga0207707_10085531
302 Ga0207695_10192459
303 Ga0207671_10002593
304 Ga0207671_10364497
305 Ga0207660_10057028
306 Ga0207660_10173676
307 Ga0207660_10275672
308 Ga0207662_10167194
309 Ga0207657_10012327
310 Ga0207652_10010345
311 Ga0207652_10034173
312 Ga0207652_10156020
313 Ga0207652_10317605
314 Ga0207652_10584087
315 Ga0207650_10006976
316 Ga0207659_10316833
317 Ga0207687_10000045
318 Ga0207687_10121976
319 Ga0207644_10640587
320 Ga0207690_10214528
321 Ga0207670_10012426
322 Ga0207704_10027296
323 Ga0207691_10003275
324 Ga0207691_10582015
325 Ga0207689_10009528
326 Ga0207661_10025835
327 Ga0207667_10008067
328 Ga0207667_10064960
329 Ga0207667_10128578
330 Ga0207667_10218368
331 Ga0207712_10165693
332 Ga0207668_10167642
333 Ga0207640_10110032
334 Ga0207640_10369076
335 Ga0207639_10000662
336 Ga0207639_10401797
337 Ga0207708_10414758
338 Ga0207702_10119723
339 Ga0207702_10126268
340 Ga0207702_10284571
341 Ga0207641_10460916
342 Ga0207648_10506114
343 Ga0207648_10854825
344 Ga0207676_10059377
345 Ga0207676_10816073
346 Ga0207674_10125514
347 Ga0207674_10291111
348 Ga0207674_10316703
349 Ga0207674_10390146
350 Ga0207675_100007820
351 Ga0207675_100356396
352 Ga0207683_10069894
353 Ga0207683_10104196
354 Ga0207698_10186668
355 Ga0207698_10416074
356 Ga0268266_10552225
357 Ga0265332_10048775
358 Ga0265340_10174923
359 Ga0307513_10047283
360 Ga0307513_10589016
361 Ga0307509_10036181
362 Ga0307509_10046741
363 Ga0265342_10308675
364 Ga0307412_10015562
365 Ga0307414_10065417
366 Ga0373943_0175741
367 Ga0373931_0306648
368 Ga0373925_0488654
369 Ga0395905_0782818
370 Ga0436363_1124965
371 Ga0439465_0000842
372 Ga0451807_0668973
373 Ga0466959_0283349
374 Ga0495650_0083967
375 Ga0495632_0004912
376 Ga0495643_0226800
377 Ga0495663_0000037
378 Ga0495609_0000452
379 Ga0495633_0004583
380 Ga0495625_0000825
381 Ga0495613_0013368
382 Ga0495581_0111622
383 Ga0495604_0457466
384 Ga0495680_0091318
385 Ga0495686_0000079
386 Ga0495686_0001625
387 Ga0495602_0302518
388 Ga0496105_0044399
389 Ga0496105_0476303
390 Ga0496114_0339362
391 Ga0496115_0055831
392 Ga0496115_0126561
393 Ga0495682_0003571
394 Ga0501032_0008811
395 Ga0501070_0235290
396 Ga0501073_0042115
397 Ga0501242_000052
398 Ga0501241_000018
399 Ga0501266_006551
400 Ga0501269_000014
401 Ga0501212_020044
402 nmdc:mga0k408_90381_c1
403 nmdc:mga0rr50_250576_c1
404 Ga0500644_0052277
405 Ga0500622_0028629
406 Ga0501082_0451867
407 2588233041
408 2590612080
409 2729199894
410 2740058920
411 2772604753
412 2775672064
413 2842725585
414 2852630472
415 2919098500
416 2945926119
417 2965322879

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

3

119

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
2fmu-assembly1.cif.gz_A crystal structure of a tat-interacting protein homologue (htatip2, aw111545, cc3, tip30) from mus musculus at 2.30 a resolution 0.8159 3 216
2gvc-assembly1.cif.gz_B crystal structure of flavin-containing monooxygenase (fmo)from s.pombe and substrate (methimazole) complex 0.7695 2 40
4ivm-assembly1.cif.gz_B structure of human protoporphyrinogen ix oxidase(r59g) 0.7678 3 35
1mld-assembly3.cif.gz_B refined structure of mitochondrial malate dehydrogenase from porcine heart and the consensus structure for dicarboxylic acid oxidoreductases 0.7675 5 115
2bka-assembly1.cif.gz_A-2 cc3(tip30)crystal structure 0.7669 3 216
ID Description Score Start End Superfamily
af_Q54WF5_27_272_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9094 3 218 3.40.50.720
af_Q54WF5_27_272_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8974 3 218 3.40.50.720
2fmuA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8159 3 216 3.40.50.720
af_Q5DX36_1_216_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.7796 4 216 3.40.50.720
af_Q4D146_5_265_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.7679 5 213 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3C1PNZ3-F1-model_v4 Nucleoside-diphosphate sugar epimerase 0.9773 5 65
AF-A0A519GZU2-F1-model_v4 Epimerase 0.9605 4 111
AF-A0A833AP09-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9602 1 76
AF-A0A1Q8QLP7-F1-model_v4 Uncharacterized protein 0.9599 2 68
AF-A0A7Y2MTA3-F1-model_v4 Epimerase 0.958 4 106

Map