F317570

General Info

Members Datasets Scaffolds Average Seq Length
208 136 416 255

Family's Representative Sequence

Representative Sequence 3300005618|Ga0068864_100012521|Ga0068864_1000125216
Length 277
Sequence VTCSRAKSTKYLWYTSSVERLQKILSQAGVASRRASEQMMLDGRVTVNGKTVRELGTKADLARDDIRVDGSRVKVAERHRYILLNKPRGYVTTRSDPERRKTVIDLLRGVKEYVYPVGRLDYESEGLLLLMNDGDLAARLTHPSHGIARVYEATVLGIPDAHDLERLQRGMVIDGRRMRASEVALLPMKRDATGATLVITLREGRNRQVRNMCEAIGHPVDHLKRVAIGPLRDPRLKTGYWRDLDDDEVKRLKKAAAGTEDTKENKGHQEKATRRKP

Samples

Sample ID Description Type Environment
1 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
43 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
49 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
56 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
57 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
58 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
59 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
60 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
61 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
86 3300034819 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 Metagenome Rhizosphere
87 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
88 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
89 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
90 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
91 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
92 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
93 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
94 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
95 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
96 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
97 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
98 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
99 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
100 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
101 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
102 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
103 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
104 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
105 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
106 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
107 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
108 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
109 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
110 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
111 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
112 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
113 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
114 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
115 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
116 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
117 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
118 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
119 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
120 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
121 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
122 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
123 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
124 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
125 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
126 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
127 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
128 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
133 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
134 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
135 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
136 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 7.21
Rhizosphere 92.79
Stem 0
Stem Tuber 0
Unclassified 7.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068864_100012521 3300005618 Bacteria 7015
2 Ga0065712_10127325 3300005290 Bacteria 1587
3 Ga0070666_10263952 3300005335 Bacteria 1221
4 Ga0068868_100016007 3300005338 Bacteria 5561
5 Ga0068868_100253045 3300005338 Bacteria 1483
6 Ga0068868_100330531 3300005338 Bacteria 1301
7 Ga0070660_100016405 3300005339 Bacteria 5375
8 Ga0070689_100350614 3300005340 Bacteria 1238
9 Ga0070675_100127447 3300005354 Bacteria 2167
10 Ga0070675_100450195 3300005354 Bacteria 1155
11 Ga0070674_100276088 3300005356 Bacteria 1330
12 Ga0070673_100064043 3300005364 Bacteria 2928
13 Ga0070673_100308650 3300005364 Unclassified 1395
14 Ga0070688_100261229 3300005365 Bacteria 1237
15 Ga0070667_100289584 3300005367 Bacteria 1472
16 Ga0070714_100020059 3300005435 Bacteria 5453
17 Ga0070713_100046357 3300005436 Bacteria 3566
18 Ga0070694_100463427 3300005444 Unclassified 1003
19 Ga0070708_100254818 3300005445 Bacteria 1649
20 Ga0070707_100034549 3300005468 Bacteria 4823
21 Ga0070698_100141241 3300005471 Bacteria 2359
22 Ga0070698_100388224 3300005471 Bacteria 1329
23 Ga0070699_100128742 3300005518 Bacteria 2231
24 Ga0070699_100138280 3300005518 Bacteria 2149
25 Ga0070699_100329128 3300005518 Bacteria 1374
26 Ga0070679_100085653 3300005530 Bacteria 3138
27 Ga0070697_100599629 3300005536 Bacteria 968
28 Ga0070695_100119319 3300005545 Bacteria 1802
29 Ga0070695_100219316 3300005545 Bacteria 1370
30 Ga0070696_100045959 3300005546 Bacteria 3026
31 Ga0070665_100007069 3300005548 Bacteria 11406
32 Ga0070665_100069026 3300005548 Bacteria 3543
33 Ga0070704_100034458 3300005549 Bacteria 3434
34 Ga0070704_100404756 3300005549 Bacteria 1165
35 Ga0068855_100007793 3300005563 Bacteria 12935
36 Ga0070664_100498310 3300005564 Bacteria 1122
37 Ga0070702_100309083 3300005615 Bacteria 1097
38 Ga0068859_100162173 3300005617 Bacteria 2315
39 Ga0068859_100592737 3300005617 Bacteria 1202
40 Ga0068866_10126562 3300005718 Bacteria 1447
41 Ga0068851_10009638 3300005834 Bacteria 4496
42 Ga0068863_100075619 3300005841 Bacteria 3187
43 Ga0068858_100009344 3300005842 Bacteria 9362
44 Ga0068858_100017634 3300005842 Bacteria 6692
45 Ga0068858_100133535 3300005842 Bacteria 2328
46 Ga0068858_100409842 3300005842 Bacteria 1303
47 Ga0068858_100417744 3300005842 Bacteria 1290
48 Ga0068860_100185409 3300005843 Bacteria 2012
49 Ga0068860_100412297 3300005843 Bacteria 1338
50 Ga0081539_10007799 3300005985 Bacteria 9578
51 Ga0075432_10052161 3300006058 Bacteria 1444
52 Ga0097621_100019155 3300006237 Bacteria 5247
53 Ga0068871_100116930 3300006358 Bacteria 2248
54 Ga0075428_100100386 3300006844 Bacteria 3155
55 Ga0075433_10126357 3300006852 Bacteria 2271
56 Ga0075433_10137235 3300006852 Bacteria 2174
57 Ga0075433_10245135 3300006852 Bacteria 1590
58 Ga0075434_100004797 3300006871 Bacteria 12250
59 Ga0075434_100496726 3300006871 Unclassified 1241
60 Ga0075429_100523014 3300006880 Bacteria 1040
61 Ga0075429_100674582 3300006880 Bacteria 906
62 Ga0068865_100011116 3300006881 Bacteria 5624
63 Ga0075436_100000845 3300006914 Bacteria 20351
64 Ga0075436_100003223 3300006914 Bacteria 11188
65 Ga0075436_100113028 3300006914 Bacteria 1896
66 Ga0075436_100249796 3300006914 Bacteria 1263
67 Ga0097620_100162157 3300006931 Bacteria 2315
68 Ga0097620_100592772 3300006931 Bacteria 1202
69 Ga0075435_100000049 3300007076 Bacteria 60558
70 Ga0075435_100011165 3300007076 Bacteria 6589
71 Ga0075435_100089951 3300007076 Bacteria 2532
72 Ga0075435_100097561 3300007076 Bacteria 2432
73 Ga0075435_100143212 3300007076 Bacteria 2006
74 Ga0099794_10044037 3300007265 Bacteria 2132
75 Ga0111539_10051499 3300009094 Bacteria 4903
76 Ga0111539_10252373 3300009094 Bacteria 2054
77 Ga0111539_10404069 3300009094 Bacteria 1591
78 Ga0105245_10079397 3300009098 Bacteria 2996
79 Ga0105245_10402083 3300009098 Bacteria 1369
80 Ga0105247_10014521 3300009101 Bacteria 4724
81 Ga0105247_10029495 3300009101 Bacteria 3325
82 Ga0114129_10013092 3300009147 Bacteria 11816
83 Ga0114129_10048771 3300009147 Bacteria 5952
84 Ga0114129_10670154 3300009147 Bacteria 1337
85 Ga0114129_11070523 3300009147 Unclassified 1011
86 Ga0105243_10563783 3300009148 Bacteria 1090
87 Ga0105241_10137093 3300009174 Bacteria 1988
88 Ga0105242_10016106 3300009176 Bacteria 5809
89 Ga0105248_10102419 3300009177 Bacteria 3227
90 Ga0105248_10109093 3300009177 Bacteria 3121
91 Ga0105248_10228972 3300009177 Bacteria 2092
92 Ga0105238_10226069 3300009551 Bacteria 1848
93 Ga0105246_10614780 3300011119 Unclassified 941
94 Ga0157374_10115904 3300013296 Bacteria 2581
95 Ga0157378_10446504 3300013297 Bacteria 1283
96 Ga0157375_10059343 3300013308 Bacteria 3790
97 Ga0157376_10016862 3300014969 Bacteria 5557
98 Ga0157376_10057653 3300014969 Bacteria 3250
99 Ga0157376_10100593 3300014969 Bacteria 2525
100 Ga0207680_10329973 3300025903 Bacteria 1068
101 Ga0207645_10120440 3300025907 Unclassified 1703
102 Ga0207707_10082806 3300025912 Bacteria 2801
103 Ga0207707_10571552 3300025912 Bacteria 959
104 Ga0207657_10075833 3300025919 Bacteria 2837
105 Ga0207649_10241859 3300025920 Bacteria 1296
106 Ga0207649_10445295 3300025920 Bacteria 977
107 Ga0207652_10096695 3300025921 Bacteria 2602
108 Ga0207646_10031749 3300025922 Bacteria 4781
109 Ga0207646_10113027 3300025922 Bacteria 2438
110 Ga0207646_10406394 3300025922 Unclassified 1229
111 Ga0207694_10090889 3300025924 Bacteria 2409
112 Ga0207659_10144097 3300025926 Bacteria 1853
113 Ga0207664_10521057 3300025929 Bacteria 1065
114 Ga0207669_10404014 3300025937 Unclassified 1071
115 Ga0207704_10040710 3300025938 Bacteria 2718
116 Ga0207711_10004069 3300025941 Bacteria 12547
117 Ga0207711_10107729 3300025941 Bacteria 2474
118 Ga0207689_10251336 3300025942 Bacteria 1462
119 Ga0207679_10183577 3300025945 Bacteria 1733
120 Ga0207651_10049430 3300025960 Bacteria 2849
121 Ga0207677_10310367 3300026023 Unclassified 1307
122 Ga0207677_10333114 3300026023 Bacteria 1265
123 Ga0207703_10015371 3300026035 Bacteria 5971
124 Ga0207703_10036526 3300026035 Bacteria 3912
125 Ga0207703_10147561 3300026035 Bacteria 2047
126 Ga0207639_10603174 3300026041 Bacteria 1013
127 Ga0207641_10012474 3300026088 Bacteria 6966
128 Ga0207641_10247098 3300026088 Bacteria 1665
129 Ga0207641_10267103 3300026088 Bacteria 1604
130 Ga0207676_10935055 3300026095 Bacteria 852
131 Ga0207683_10046929 3300026121 Bacteria 3782
132 Ga0268266_10031310 3300028379 Bacteria 4516
133 Ga0268266_10099078 3300028379 Bacteria 2565
134 Ga0268264_10241651 3300028381 Bacteria 1673
135 Ga0373950_0003983 3300034818 Bacteria 2148
136 Ga0373958_0000856 3300034819 Bacteria 3918
137 Ga0373928_0002596 3300035084 Bacteria 3500
138 Ga0373929_0001721 3300035085 Bacteria 4111
139 Ga0373940_0042968 3300035088 Bacteria 1247
140 Ga0373949_0001956 3300035090 Bacteria 5539
141 Ga0373951_0000740 3300035091 Bacteria 8945
142 Ga0373952_0001005 3300035092 Bacteria 5155
143 Ga0373936_0055992 3300035113 Bacteria 1602
144 Ga0373939_0001259 3300035114 Bacteria 6186
145 Ga0373941_0001888 3300035115 Bacteria 4537
146 Ga0373941_0099480 3300035115 Bacteria 1010
147 Ga0373945_0070066 3300035116 Unclassified 1326
148 Ga0373960_0002731 3300035121 Bacteria 3991
149 Ga0373943_0090294 3300035170 Bacteria 1586
150 Ga0373946_0028862 3300035171 Bacteria 2203
151 Ga0373942_0001369 3300035207 Bacteria 6299
152 Ga0373961_0000868 3300035241 Bacteria 10194
153 Ga0373962_0001271 3300035242 Bacteria 5926
154 Ga0373924_0010269 3300035410 Bacteria 3446
155 Ga0373931_0002885 3300035691 Bacteria 7661
156 Ga0373931_0048936 3300035691 Bacteria 2243
157 Ga0373935_0007885 3300035692 Bacteria 6388
158 Ga0373927_0044250 3300035695 Bacteria 2881
159 Ga0373933_0314156 3300035724 Bacteria 1015
160 Ga0373947_0023172 3300035725 Bacteria 3609
161 Ga0373937_0124114 3300036401 Bacteria 2408
162 Ga0373925_0012303 3300037068 Bacteria 6193
163 Ga0373925_0500846 3300037068 Unclassified 997
164 Ga0453684_0000481 3300044712 Bacteria 158570
165 Ga0451576_0008045 3300045051 Bacteria 12442
166 Ga0495582_0241719 3300046473 Unclassified 1035
167 Ga0495645_0008051 3300046543 Bacteria 7342
168 Ga0495635_0045438 3300046663 Unclassified 3031
169 Ga0495613_0158860 3300046689 Unclassified 1609
170 Ga0495674_0112568 3300047319 Unclassified 2306
171 Ga0495602_0132896 3300048088 Bacteria 1982
172 Ga0496104_0190719 3300048907 Bacteria 1961
173 Ga0496104_0343278 3300048907 Bacteria 1406
174 Ga0496105_0462536 3300048908 Bacteria 1000
175 Ga0496106_0051028 3300048909 Bacteria 3119
176 Ga0496106_0146241 3300048909 Bacteria 1862
177 Ga0496108_0098521 3300048911 Bacteria 2491
178 Ga0496110_0601169 3300048913 Bacteria 998
179 Ga0496111_0437698 3300048914 Bacteria 965
180 Ga0496112_0017989 3300048915 Bacteria 6650
181 Ga0496112_0224329 3300048915 Bacteria 1835
182 Ga0496112_0780361 3300048915 Bacteria 881
183 Ga0496113_0163000 3300048916 Bacteria 1763
184 Ga0496114_0039965 3300048917 Bacteria 3882
185 Ga0496114_0086798 3300048917 Bacteria 2652
186 Ga0496114_0226196 3300048917 Bacteria 1643
187 Ga0501073_0138682 3300049589 Bacteria 1685
188 nmdc:mga05p37_153838_c1 3300050507 Bacteria 2812
189 nmdc:mga05p37_17196_c1 3300050507 Bacteria 8724
190 nmdc:mga05p37_238587_c1 3300050507 Bacteria 2187
191 nmdc:mga05p37_40256_c1 3300050507 Bacteria 5739
192 nmdc:mga05p37_52996_c1 3300050507 Bacteria 4989
193 nmdc:mga09592_594883_c1 3300050508 Bacteria 948
194 nmdc:mga08y16_216954_c1 3300050511 Bacteria 1981
195 nmdc:mga08y16_556527_c1 3300050511 Bacteria 1160
196 nmdc:mga0n895_30_c1 3300050512 Bacteria 84416
197 nmdc:mga0rr50_237453_c1 3300050513 Bacteria 1510
198 nmdc:mga0rr50_2_c1 3300050513 Bacteria 373938
199 nmdc:mga0rr50_377647_c1 3300050513 Bacteria 1195
200 nmdc:mga08x19_13641_c1 3300050514 Bacteria 4916
201 nmdc:mga08x19_24583_c1 3300050514 Bacteria 3746
202 nmdc:mga08x19_35620_c1 3300050514 Bacteria 3150
203 nmdc:mga08x19_70035_c1 3300050514 Bacteria 2285
204 nmdc:mga08x19_76_c1 3300050514 Bacteria 92204
205 nmdc:mga0a205_150445_c1 3300050515 Bacteria 2228
206 nmdc:mga0a205_283917_c1 3300050515 Bacteria 1530
207 nmdc:mga0a205_81452_c2 3300050515 Bacteria 2312
208 Ga0495619_0030238 3300053085 Bacteria 3505
209 Ga0068864_100012521
210 Ga0065712_10127325
211 Ga0070666_10263952
212 Ga0068868_100016007
213 Ga0068868_100253045
214 Ga0068868_100330531
215 Ga0070660_100016405
216 Ga0070689_100350614
217 Ga0070675_100127447
218 Ga0070675_100450195
219 Ga0070674_100276088
220 Ga0070673_100064043
221 Ga0070673_100308650
222 Ga0070688_100261229
223 Ga0070667_100289584
224 Ga0070714_100020059
225 Ga0070713_100046357
226 Ga0070694_100463427
227 Ga0070708_100254818
228 Ga0070707_100034549
229 Ga0070698_100141241
230 Ga0070698_100388224
231 Ga0070699_100128742
232 Ga0070699_100138280
233 Ga0070699_100329128
234 Ga0070679_100085653
235 Ga0070697_100599629
236 Ga0070695_100119319
237 Ga0070695_100219316
238 Ga0070696_100045959
239 Ga0070665_100007069
240 Ga0070665_100069026
241 Ga0070704_100034458
242 Ga0070704_100404756
243 Ga0068855_100007793
244 Ga0070664_100498310
245 Ga0070702_100309083
246 Ga0068859_100162173
247 Ga0068859_100592737
248 Ga0068866_10126562
249 Ga0068851_10009638
250 Ga0068863_100075619
251 Ga0068858_100009344
252 Ga0068858_100017634
253 Ga0068858_100133535
254 Ga0068858_100409842
255 Ga0068858_100417744
256 Ga0068860_100185409
257 Ga0068860_100412297
258 Ga0081539_10007799
259 Ga0075432_10052161
260 Ga0097621_100019155
261 Ga0068871_100116930
262 Ga0075428_100100386
263 Ga0075433_10126357
264 Ga0075433_10137235
265 Ga0075433_10245135
266 Ga0075434_100004797
267 Ga0075434_100496726
268 Ga0075429_100523014
269 Ga0075429_100674582
270 Ga0068865_100011116
271 Ga0075436_100000845
272 Ga0075436_100003223
273 Ga0075436_100113028
274 Ga0075436_100249796
275 Ga0097620_100162157
276 Ga0097620_100592772
277 Ga0075435_100000049
278 Ga0075435_100011165
279 Ga0075435_100089951
280 Ga0075435_100097561
281 Ga0075435_100143212
282 Ga0099794_10044037
283 Ga0111539_10051499
284 Ga0111539_10252373
285 Ga0111539_10404069
286 Ga0105245_10079397
287 Ga0105245_10402083
288 Ga0105247_10014521
289 Ga0105247_10029495
290 Ga0114129_10013092
291 Ga0114129_10048771
292 Ga0114129_10670154
293 Ga0114129_11070523
294 Ga0105243_10563783
295 Ga0105241_10137093
296 Ga0105242_10016106
297 Ga0105248_10102419
298 Ga0105248_10109093
299 Ga0105248_10228972
300 Ga0105238_10226069
301 Ga0105246_10614780
302 Ga0157374_10115904
303 Ga0157378_10446504
304 Ga0157375_10059343
305 Ga0157376_10016862
306 Ga0157376_10057653
307 Ga0157376_10100593
308 Ga0207680_10329973
309 Ga0207645_10120440
310 Ga0207707_10082806
311 Ga0207707_10571552
312 Ga0207657_10075833
313 Ga0207649_10241859
314 Ga0207649_10445295
315 Ga0207652_10096695
316 Ga0207646_10031749
317 Ga0207646_10113027
318 Ga0207646_10406394
319 Ga0207694_10090889
320 Ga0207659_10144097
321 Ga0207664_10521057
322 Ga0207669_10404014
323 Ga0207704_10040710
324 Ga0207711_10004069
325 Ga0207711_10107729
326 Ga0207689_10251336
327 Ga0207679_10183577
328 Ga0207651_10049430
329 Ga0207677_10310367
330 Ga0207677_10333114
331 Ga0207703_10015371
332 Ga0207703_10036526
333 Ga0207703_10147561
334 Ga0207639_10603174
335 Ga0207641_10012474
336 Ga0207641_10247098
337 Ga0207641_10267103
338 Ga0207676_10935055
339 Ga0207683_10046929
340 Ga0268266_10031310
341 Ga0268266_10099078
342 Ga0268264_10241651
343 Ga0373950_0003983
344 Ga0373958_0000856
345 Ga0373928_0002596
346 Ga0373929_0001721
347 Ga0373940_0042968
348 Ga0373949_0001956
349 Ga0373951_0000740
350 Ga0373952_0001005
351 Ga0373936_0055992
352 Ga0373939_0001259
353 Ga0373941_0001888
354 Ga0373941_0099480
355 Ga0373945_0070066
356 Ga0373960_0002731
357 Ga0373943_0090294
358 Ga0373946_0028862
359 Ga0373942_0001369
360 Ga0373961_0000868
361 Ga0373962_0001271
362 Ga0373924_0010269
363 Ga0373931_0002885
364 Ga0373931_0048936
365 Ga0373935_0007885
366 Ga0373927_0044250
367 Ga0373933_0314156
368 Ga0373947_0023172
369 Ga0373937_0124114
370 Ga0373925_0012303
371 Ga0373925_0500846
372 Ga0453684_0000481
373 Ga0451576_0008045
374 Ga0495582_0241719
375 Ga0495645_0008051
376 Ga0495635_0045438
377 Ga0495613_0158860
378 Ga0495674_0112568
379 Ga0495602_0132896
380 Ga0496104_0190719
381 Ga0496104_0343278
382 Ga0496105_0462536
383 Ga0496106_0051028
384 Ga0496106_0146241
385 Ga0496108_0098521
386 Ga0496110_0601169
387 Ga0496111_0437698
388 Ga0496112_0017989
389 Ga0496112_0224329
390 Ga0496112_0780361
391 Ga0496113_0163000
392 Ga0496114_0039965
393 Ga0496114_0086798
394 Ga0496114_0226196
395 Ga0501073_0138682
396 nmdc:mga05p37_153838_c1
397 nmdc:mga05p37_17196_c1
398 nmdc:mga05p37_238587_c1
399 nmdc:mga05p37_40256_c1
400 nmdc:mga05p37_52996_c1
401 nmdc:mga09592_594883_c1
402 nmdc:mga08y16_216954_c1
403 nmdc:mga08y16_556527_c1
404 nmdc:mga0n895_30_c1
405 nmdc:mga0rr50_237453_c1
406 nmdc:mga0rr50_2_c1
407 nmdc:mga0rr50_377647_c1
408 nmdc:mga08x19_13641_c1
409 nmdc:mga08x19_24583_c1
410 nmdc:mga08x19_35620_c1
411 nmdc:mga08x19_70035_c1
412 nmdc:mga08x19_76_c1
413 nmdc:mga0a205_150445_c1
414 nmdc:mga0a205_283917_c1
415 nmdc:mga0a205_81452_c2
416 Ga0495619_0030238

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01479

S4

S4 domain

19

66

0.92

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

80

215

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
4lab-assembly1.cif.gz_A crystal structure of the catalytic domain of rlub 0.8986 38 218
2olw-assembly2.cif.gz_B crystal structure of e. coli pseudouridine synthase rlue 0.8843 39 207
2gml-assembly2.cif.gz_B crystal structure of catalytic domain of e.coli rluf 0.8738 39 217
4lab-assembly1.cif.gz_A crystal structure of the catalytic domain of rlub 0.8672 38 218
2gml-assembly2.cif.gz_B crystal structure of catalytic domain of e.coli rluf 0.8503 39 217
ID Description Score Start End Superfamily
af_Q2FY78_59_131_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9519 35 104 3.30.70.580
4lgtD02 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.922 38 217 3.30.2350.10
af_Q2FY78_132_218_3.30.70.1560 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Alpha-L RNA-binding motif 0.9096 108 194 3.30.70.1560
af_P9WHQ1_10_70_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.907 2 36 3.10.290.10
af_A0A1D6JNZ0_152_214_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9069 2 34 3.10.290.10
ID Description Score Start End GO Terms
AF-A0A6J7BS72-F1-model_v4 Unannotated protein 0.9642 44 217 GO:0001522
GO:0003723
GO:0006364
GO:0009982
AF-A0A3M1CS84-F1-model_v4 rRNA pseudouridine synthase 0.955 81 218 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A0A3D4U5C9-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9541 38 219 GO:0001522
GO:0003723
GO:0006364
GO:0009982
GO:0140098
AF-A0A7V3J1T4-F1-model_v4 rRNA pseudouridine synthase 0.9532 93 218 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A0A380EK95-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9527 52 218 GO:0001522
GO:0003723
GO:0006364
GO:0009982
GO:0140098

Map