F315755
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 206 | 156 | 176 | 661 |
Family's Representative Sequence
| Representative Sequence | 3300053125|Ga0500618_006630|Ga0500618_006630_1059_3128 |
| Length | 689 |
| Sequence | MALWTTATSPTPARWSRLNIRAPMQDHSFLTTVFGRLTLDSLPLHEPILIGTFIAVAALGLIVVAALTYFRLWGYLWKEWFTSVDHKKIGIMYIVLGIIMLLRGFSDAVMMRLQQAVAFGGNEGFLHSSHYDQIFTAHGTIMIFFVAIPLIVGIVNFVMPLQIGARDVAFPYLNNLSFWLTVAGAVLVMISLFVGEFARTGWLSYAPLAEKAYSPDTGVDYYLWSLEIAGIGTTLSAVNMIATIVKMRAPGMTMMKMPVFTWTALCSNVLAVAIFPALTAAFFLLLLDRYLDTAFFINDLGGNAMLYWNMVWMWGHPEVYVLVLPAFGIYSEITSTFTGKRLFGYASMVYATVVITILSYLVWLHHYFTMGSGASVNAFFGIATMVIAIPTGAKVFNWLFTMFRGEIRFELPMMWVVAFMLTFVVGGMTGVLMAIPAADFVLHNTLFLVAHFHNVIIGGVVFGLFAGMTYWFPKAFGFKMDEFWGKVAFWGWVIGYWVAWTPIYIVGLMGVPRRVNHLDDPSLQPYFIVAAIGAVIILIGILGFVMAIVMGIVKRNKLRDVTGDPWDARTLEWSTTSPPPAYNFAITPVVYELDAWHDMKVHGYKHPTDGFRPVHMPRNTATGIIVSALAVALGFGMIWYMWWLAAISFVGILVVQILHTFNYSRDYFIPTEAVVLAESKRTQASEVRA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2582581304 | Rhizobium sp. YR519 | Isolate | Rhizosphere |
| 2 | 2585427594 | Rhizobium sp. YR528 | Isolate | Rhizosphere |
| 3 | 2599185156 | Rhizobium sp. NFR03 | Isolate | Rhizoplane |
| 4 | 2600254954 | Pseudomonas sp. NFACC19-2 | Isolate | Rhizoplane |
| 5 | 2600255389 | Pseudomonas sp. NFPP33 | Isolate | Rhizoplane |
| 6 | 2643221547 | Pseudolabrys sp. Root1462 | Isolate | Unclassified |
| 7 | 2643221622 | Sphingomonas sp. Root241 | Isolate | Unclassified |
| 8 | 2643221663 | Brevundimonas sp. Root1279 | Isolate | Unclassified |
| 9 | 2643221699 | Brevundimonas sp. Root1423 | Isolate | Unclassified |
| 10 | 2738541293 | Rhizobium sp. GV031 | Isolate | Unclassified |
| 11 | 2747842501 | Xanthomonas sp. WCS2014-23 | Isolate | Unclassified |
| 12 | 2818991461 | Neorhizobium alkalisoli 1225 | Isolate | Unclassified |
| 13 | 2823421272 | Pseudomonas mendocina S5.2 | Isolate | Rhizoplane |
| 14 | 2842482326 | Rhizobium lusitanum SEMIA 4060 | Isolate | Nodule |
| 15 | 2842509118 | Rhizobium paranaense SEMIA 4064 | Isolate | Nodule |
| 16 | 2842922631 | Pararhizobium sp. R-72066 | Isolate | Unclassified |
| 17 | 2852387548 | Rhizobium jaguaris CCGE525 | Isolate | Unclassified |
| 18 | 2884338543 | Luteibacter pinisoli MAH-14 | Isolate | Rhizosphere |
| 19 | 2885429604 | Sphingomonas sp. WZY 27 | Isolate | Rhizosphere |
| 20 | 2894817345 | Aureimonas psammosilenae YIM DR1026 | Isolate | Unclassified |
| 21 | 2895880812 | Frankia sp. BMG5.11 | Isolate | Unclassified |
| 22 | 2919085039 | Luteibacter sp. 1214 | Isolate | Unclassified |
| 23 | 2919501602 | Pseudomonas alcaliphila 3512 | Isolate | Unclassified |
| 24 | 2924710171 | Mesorhizobium sp. M7A.T.Ca.TU.009.01.3.2 | Isolate | Nodule |
| 25 | 2926063275 | Pseudomonas sp. 3400 | Isolate | Unclassified |
| 26 | 2941471342 | Luteibacter sp. 621 | Isolate | Unclassified |
| 27 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 28 | 3300002773 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS | Metagenome | Endosphere |
| 29 | 3300002774 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA | Metagenome | Endosphere |
| 30 | 3300003187 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB | Metagenome | Endosphere |
| 31 | 3300003215 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF | Metagenome | Endosphere |
| 32 | 3300003578 | Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) | Metatranscriptome | Unclassified |
| 33 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 34 | 3300003773 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 | Metagenome | Endosphere |
| 35 | 3300003775 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 | Metagenome | Endosphere |
| 36 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 37 | 3300003792 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 | Metagenome | Endosphere |
| 38 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 39 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 40 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 41 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 42 | 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Metagenome | Rhizosphere |
| 43 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 44 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 45 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 46 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 47 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 48 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 49 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 50 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 51 | 3300006948 | Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 | Metagenome | Nodule |
| 52 | 3300009011 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG | Metagenome | Rhizosphere |
| 53 | 3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Metagenome | Rhizosphere |
| 54 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 55 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 56 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 57 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 58 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 59 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 60 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 61 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 62 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 63 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 64 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 65 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 66 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 67 | 3300025245 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) | Metagenome | Endosphere |
| 68 | 3300025258 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) | Metagenome | Endosphere |
| 69 | 3300025261 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) | Metagenome | Endosphere |
| 70 | 3300025263 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 71 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 72 | 3300025292 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 73 | 3300025294 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 74 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 75 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 76 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 77 | 3300025299 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 78 | 3300025303 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 79 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 80 | 3300025711 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 81 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 82 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 83 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 84 | 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 85 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 86 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 87 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 88 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 89 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 90 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 91 | 3300027666 | Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) | Metagenome | Nodule |
| 92 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 93 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 94 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 95 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 96 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 97 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 98 | 3300031852 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 | Metagenome | Rhizosphere |
| 99 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 100 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 101 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 102 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 103 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 104 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 105 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 106 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 107 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 108 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 109 | 3300039438 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 | Metagenome | Rhizosphere |
| 110 | 3300042006 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 | Metagenome | Rhizosphere |
| 111 | 3300042435 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 | Metagenome | Rhizosphere |
| 112 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 113 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 114 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 115 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 116 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 117 | 3300046515 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere | Metagenome | Rhizosphere |
| 118 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 119 | 3300046522 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere | Metagenome | Rhizosphere |
| 120 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 121 | 3300046535 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere | Metagenome | Rhizosphere |
| 122 | 3300046539 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere | Metagenome | Rhizosphere |
| 123 | 3300046691 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300047317 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere | Metagenome | Rhizosphere |
| 125 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 126 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 127 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 128 | 3300048919 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled | Metagenome | Unclassified |
| 129 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 130 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 131 | 3300048922 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 | Metagenome | Unclassified |
| 132 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 133 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 134 | 3300048926 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled | Metagenome | Unclassified |
| 135 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 136 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 137 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 138 | 3300049161 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 139 | 3300049528 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 140 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 141 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 142 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 143 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 144 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 145 | 3300049686 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control | Metagenome | Rhizosphere |
| 146 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 147 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 148 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 149 | 3300053094 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere | Metagenome | Endosphere |
| 150 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
| 151 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 152 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 153 | 8002745576 | Marinomonas spartinae USM8 | Isolate | Rhizosphere |
| 154 | 8005484373 | Rhizobium tropici SARCC-755 | Isolate | Nodule |
| 155 | 8034962539 | Pseudomonas sediminis PI11 | Isolate | Rhizosphere |
| 156 | 8055632911 | Paenibacillus radicibacter N1-5-1-14 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 83.98 |
| Metatranscriptomes | 1.46 |
| Isolates | 14.56 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 27.67 |
| Nodule | 2.91 |
| Rhizoplane | 2.91 |
| Rhizosphere | 48.06 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 18.45 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | JGI25162J39368_1002521 | 3300002737 | Bacteria | 7004 |
| 2 | JGI25152J39213_1001252 | 3300002773 | Bacteria | 11547 |
| 3 | JGI25150J39212_1000073 | 3300002774 | Bacteria | 60930 |
| 4 | JGI25150J39212_1000142 | 3300002774 | Bacteria | 40535 |
| 5 | JGI25150J39212_1000207 | 3300002774 | Bacteria | 31909 |
| 6 | JGI25150J39212_1000230 | 3300002774 | Bacteria | 30285 |
| 7 | JGI25151J46595_10000031 | 3300003187 | Bacteria | 197865 |
| 8 | JGI25153J46596_10000038 | 3300003215 | Bacteria | 178190 |
| 9 | JGI25153J46596_10000927 | 3300003215 | Bacteria | 17813 |
| 10 | Ga0006562J51391_1005855 | 3300003578 | Bacteria | 3889 |
| 11 | Ga0055526_1005367 | 3300003771 | Bacteria | 7385 |
| 12 | Ga0055537_1001276 | 3300003773 | Bacteria | 10463 |
| 13 | Ga0055524_1000276 | 3300003775 | Bacteria | 50977 |
| 14 | Ga0055530_10000521 | 3300003791 | Bacteria | 33319 |
| 15 | Ga0055540_1004251 | 3300003792 | Bacteria | 6562 |
| 16 | Ga0055531_10000203 | 3300003794 | Bacteria | 65490 |
| 17 | Ga0055531_10002135 | 3300003794 | Bacteria | 13541 |
| 18 | Ga0065165_1000030 | 3300005262 | Bacteria | 218104 |
| 19 | Ga0065165_1002026 | 3300005262 | Bacteria | 18863 |
| 20 | Ga0065165_1003761 | 3300005262 | Bacteria | 10189 |
| 21 | Ga0065704_10083757 | 3300005289 | Bacteria | 3423 |
| 22 | Ga0070658_10010378 | 3300005327 | Bacteria | 7471 |
| 23 | Ga0070668_100002241 | 3300005347 | Bacteria | 14228 |
| 24 | Ga0070669_100001467 | 3300005353 | Bacteria | 17064 |
| 25 | Ga0070671_100016021 | 3300005355 | Bacteria | 6056 |
| 26 | Ga0070665_100000101 | 3300005548 | Bacteria | 159353 |
| 27 | Ga0068855_100026143 | 3300005563 | Bacteria | 6982 |
| 28 | Ga0068856_100006254 | 3300005614 | Bacteria | 11688 |
| 29 | Ga0068852_100003121 | 3300005616 | Bacteria | 11542 |
| 30 | Ga0068860_100000012 | 3300005843 | Bacteria | 326398 |
| 31 | Ga0068862_100003080 | 3300005844 | Bacteria | 14536 |
| 32 | Ga0068862_100013492 | 3300005844 | Bacteria | 6766 |
| 33 | Ga0099826_10000004 | 3300006948 | Bacteria | 802669 |
| 34 | Ga0105251_10003391 | 3300009011 | Bacteria | 11584 |
| 35 | Ga0105250_10000005 | 3300009092 | Bacteria | 422580 |
| 36 | Ga0105247_10031590 | 3300009101 | Bacteria | 3214 |
| 37 | Ga0105241_10017837 | 3300009174 | Bacteria | 5221 |
| 38 | Ga0105248_10016115 | 3300009177 | Bacteria | 8225 |
| 39 | Ga0105239_10081726 | 3300010375 | Bacteria | 3557 |
| 40 | Ga0157371_10014909 | 3300013102 | Bacteria | 5849 |
| 41 | Ga0157370_10000193 | 3300013104 | Bacteria | 76373 |
| 42 | Ga0157369_10030435 | 3300013105 | Bacteria | 5953 |
| 43 | Ga0157369_10039012 | 3300013105 | Bacteria | 5192 |
| 44 | Ga0157375_10005255 | 3300013308 | Bacteria | 11243 |
| 45 | Ga0163163_10058370 | 3300014325 | Bacteria | 3815 |
| 46 | Ga0157379_10000199 | 3300014968 | Bacteria | 46395 |
| 47 | Ga0182005_1000004 | 3300015265 | Bacteria | 609645 |
| 48 | Ga0163161_10005751 | 3300017792 | Bacteria | 8592 |
| 49 | Ga0209437_100205 | 3300025233 | Bacteria | 115669 |
| 50 | Ga0207425_1000016 | 3300025245 | Bacteria | 428169 |
| 51 | Ga0207425_1000070 | 3300025245 | Bacteria | 116438 |
| 52 | Ga0207425_1002304 | 3300025245 | Bacteria | 6850 |
| 53 | Ga0209129_1000172 | 3300025258 | Bacteria | 95144 |
| 54 | Ga0209129_1000232 | 3300025258 | Bacteria | 61645 |
| 55 | Ga0209129_1000388 | 3300025258 | Bacteria | 35376 |
| 56 | Ga0209233_1000187 | 3300025261 | Bacteria | 133091 |
| 57 | Ga0209565_1000008 | 3300025263 | Bacteria | 774179 |
| 58 | Ga0209673_1002045 | 3300025273 | Bacteria | 15283 |
| 59 | Ga0209673_1004202 | 3300025273 | Bacteria | 7857 |
| 60 | Ga0209676_1006635 | 3300025292 | Bacteria | 5652 |
| 61 | Ga0209025_1000083 | 3300025294 | Bacteria | 265556 |
| 62 | Ga0209025_1000400 | 3300025294 | Bacteria | 88895 |
| 63 | Ga0209564_1000673 | 3300025295 | Bacteria | 50442 |
| 64 | Ga0209758_1000009 | 3300025297 | Bacteria | 1123483 |
| 65 | Ga0209758_1000090 | 3300025297 | Bacteria | 246564 |
| 66 | Ga0209758_1001503 | 3300025297 | Bacteria | 27128 |
| 67 | Ga0209758_1002052 | 3300025297 | Bacteria | 21592 |
| 68 | Ga0209050_1000005 | 3300025298 | Bacteria | 1557793 |
| 69 | Ga0209050_1000010 | 3300025298 | Bacteria | 980454 |
| 70 | Ga0209050_1000169 | 3300025298 | Bacteria | 151269 |
| 71 | Ga0209050_1003178 | 3300025298 | Bacteria | 12485 |
| 72 | Ga0209050_1010752 | 3300025298 | Bacteria | 4459 |
| 73 | Ga0209050_1013411 | 3300025298 | Bacteria | 3641 |
| 74 | Ga0209256_1000009 | 3300025299 | Bacteria | 922071 |
| 75 | Ga0209256_1000010 | 3300025299 | Bacteria | 912110 |
| 76 | Ga0209051_1012233 | 3300025303 | Bacteria | 4162 |
| 77 | Ga0209257_1000009 | 3300025304 | Bacteria | 1205047 |
| 78 | Ga0209257_1000017 | 3300025304 | Bacteria | 866287 |
| 79 | Ga0209257_1000287 | 3300025304 | Bacteria | 111624 |
| 80 | Ga0209257_1001941 | 3300025304 | Bacteria | 22322 |
| 81 | Ga0209257_1001956 | 3300025304 | Bacteria | 22219 |
| 82 | Ga0207696_1000181 | 3300025711 | Bacteria | 98281 |
| 83 | Ga0207647_10000002 | 3300025904 | Bacteria | 400771 |
| 84 | Ga0207681_10000186 | 3300025923 | Bacteria | 50375 |
| 85 | Ga0207644_10011842 | 3300025931 | Bacteria | 5778 |
| 86 | Ga0207711_10025799 | 3300025941 | Bacteria | 4928 |
| 87 | Ga0207667_10005925 | 3300025949 | Bacteria | 14881 |
| 88 | Ga0207667_10083719 | 3300025949 | Bacteria | 3303 |
| 89 | Ga0207668_10041476 | 3300025972 | Bacteria | 3111 |
| 90 | Ga0207658_10006391 | 3300025986 | Bacteria | 8047 |
| 91 | Ga0207702_10013539 | 3300026078 | Bacteria | 6775 |
| 92 | Ga0207674_10063158 | 3300026116 | Bacteria | 3738 |
| 93 | Ga0207698_10026292 | 3300026142 | Bacteria | 4115 |
| 94 | Ga0209282_1000015 | 3300027666 | Bacteria | 206531 |
| 95 | Ga0268266_10000314 | 3300028379 | Bacteria | 76554 |
| 96 | Ga0268265_10040420 | 3300028380 | Bacteria | 3444 |
| 97 | Ga0268264_10000292 | 3300028381 | Bacteria | 84089 |
| 98 | Ga0268264_10002628 | 3300028381 | Bacteria | 15686 |
| 99 | Ga0307408_100000304 | 3300031548 | Bacteria | 47053 |
| 100 | Ga0307405_10008120 | 3300031731 | Bacteria | 5302 |
| 101 | Ga0307405_10017395 | 3300031731 | Bacteria | 3944 |
| 102 | Ga0307413_10012494 | 3300031824 | Bacteria | 4229 |
| 103 | Ga0307410_10004525 | 3300031852 | Bacteria | 7201 |
| 104 | Ga0307406_10013073 | 3300031901 | Bacteria | 4746 |
| 105 | Ga0307407_10001118 | 3300031903 | Bacteria | 9380 |
| 106 | Ga0307412_10001031 | 3300031911 | Bacteria | 15911 |
| 107 | Ga0307409_100002657 | 3300031995 | Bacteria | 9415 |
| 108 | Ga0307409_100018557 | 3300031995 | Bacteria | 4681 |
| 109 | Ga0307414_10026214 | 3300032004 | Bacteria | 3748 |
| 110 | Ga0307411_10002468 | 3300032005 | Bacteria | 8195 |
| 111 | Ga0307411_10032257 | 3300032005 | Bacteria | 3234 |
| 112 | Ga0307415_100027641 | 3300032126 | Bacteria | 3597 |
| 113 | Ga0307415_100031417 | 3300032126 | Bacteria | 3421 |
| 114 | Ga0307510_10008747 | 3300033180 | Bacteria | 12065 |
| 115 | Ga0395899_0009187 | 3300037312 | Bacteria | 7590 |
| 116 | Ga0436365_0981578 | 3300039437 | Bacteria | 4125 |
| 117 | Ga0436360_0934711 | 3300039438 | Bacteria | 4193 |
| 118 | Ga0439432_001838 | 3300042006 | Bacteria | 7972 |
| 119 | Ga0439434_0000210 | 3300042435 | Bacteria | 16132 |
| 120 | Ga0466969_0006751 | 3300044656 | Bacteria | 6103 |
| 121 | Ga0466968_0005343 | 3300044735 | Bacteria | 4805 |
| 122 | Ga0495650_0000001 | 3300046471 | Bacteria | 1085492 |
| 123 | Ga0495583_0000003 | 3300046506 | Bacteria | 709273 |
| 124 | Ga0495610_0000131 | 3300046512 | Bacteria | 82558 |
| 125 | Ga0495610_0000250 | 3300046512 | Bacteria | 56512 |
| 126 | Ga0495610_0014377 | 3300046512 | Bacteria | 4650 |
| 127 | Ga0495620_0027655 | 3300046515 | Bacteria | 2651 |
| 128 | Ga0495632_0000011 | 3300046519 | Bacteria | 266804 |
| 129 | Ga0495643_0000004 | 3300046522 | Bacteria | 519944 |
| 130 | Ga0495648_0001207 | 3300046524 | Bacteria | 25895 |
| 131 | Ga0495586_0019616 | 3300046535 | Bacteria | 3600 |
| 132 | Ga0495621_0011733 | 3300046539 | Bacteria | 2720 |
| 133 | Ga0495670_0000034 | 3300046691 | Bacteria | 80461 |
| 134 | Ga0495604_0023588 | 3300047317 | Bacteria | 4908 |
| 135 | Ga0495686_0000028 | 3300047472 | Bacteria | 369493 |
| 136 | Ga0495686_0000164 | 3300047472 | Bacteria | 126101 |
| 137 | Ga0495686_0000661 | 3300047472 | Bacteria | 46810 |
| 138 | Ga0495686_0003752 | 3300047472 | Bacteria | 12924 |
| 139 | Ga0496114_0007473 | 3300048917 | Bacteria | 8640 |
| 140 | Ga0496115_0004443 | 3300048918 | Bacteria | 10165 |
| 141 | Ga0496116_0005234 | 3300048919 | Bacteria | 12129 |
| 142 | Ga0496116_0006977 | 3300048919 | Bacteria | 10121 |
| 143 | Ga0496116_0042794 | 3300048919 | Bacteria | 3092 |
| 144 | Ga0496117_0005115 | 3300048920 | Bacteria | 14014 |
| 145 | Ga0496117_0007233 | 3300048920 | Bacteria | 10922 |
| 146 | Ga0496117_0008020 | 3300048920 | Bacteria | 10125 |
| 147 | Ga0496117_0018675 | 3300048920 | Bacteria | 5731 |
| 148 | Ga0496118_0000608 | 3300048921 | Bacteria | 58952 |
| 149 | Ga0496118_0000803 | 3300048921 | Bacteria | 50156 |
| 150 | Ga0496118_0008544 | 3300048921 | Bacteria | 10559 |
| 151 | Ga0496119_0012434 | 3300048922 | Bacteria | 6912 |
| 152 | Ga0496121_0000246 | 3300048924 | Bacteria | 114919 |
| 153 | Ga0496121_0033869 | 3300048924 | Bacteria | 4610 |
| 154 | Ga0496122_0041456 | 3300048925 | Bacteria | 3639 |
| 155 | Ga0496122_0047278 | 3300048925 | Bacteria | 3323 |
| 156 | Ga0496123_0007763 | 3300048926 | Bacteria | 10009 |
| 157 | Ga0496124_0002161 | 3300048927 | Bacteria | 26367 |
| 158 | Ga0496125_0010823 | 3300048928 | Bacteria | 9185 |
| 159 | Ga0496126_0025712 | 3300048929 | Bacteria | 5658 |
| 160 | Ga0501305_000130 | 3300049161 | Bacteria | 4844 |
| 161 | Ga0501312_000188 | 3300049528 | Bacteria | 4176 |
| 162 | Ga0501033_0012206 | 3300049570 | Bacteria | 6557 |
| 163 | Ga0501034_0005872 | 3300049571 | Bacteria | 13347 |
| 164 | Ga0501037_0024109 | 3300049573 | Bacteria | 4499 |
| 165 | Ga0501046_0005504 | 3300049580 | Bacteria | 11313 |
| 166 | Ga0501047_0006048 | 3300049581 | Bacteria | 11382 |
| 167 | Ga0501047_0018727 | 3300049581 | Bacteria | 6638 |
| 168 | Ga0501047_0067691 | 3300049581 | Bacteria | 3441 |
| 169 | Ga0501257_000883 | 3300049686 | Bacteria | 6052 |
| 170 | Ga0501080_0000625 | 3300049742 | Bacteria | 28031 |
| 171 | Ga0501044_0076075 | 3300049823 | Bacteria | 3408 |
| 172 | Ga0500643_000828 | 3300053087 | Bacteria | 19969 |
| 173 | Ga0500566_0000089 | 3300053094 | Bacteria | 45622 |
| 174 | Ga0500618_006630 | 3300053125 | Bacteria | 3378 |
| 175 | Ga0500559_0000058 | 3300053136 | Bacteria | 88268 |
| 176 | Ga0500573_0000021 | 3300053140 | Bacteria | 159093 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | iso_pu_bacteria | 2924710171 | 2924717030 | 546 |
| 2 | 3300046535 | Ga0495586_0019616 | Ga0495586_0019616_11_1753 | 574 |
| 3 | 3300044656 | Ga0466969_0006751 | Ga0466969_0006751_1353_3230 | 579 |
| 4 | 3300044735 | Ga0466968_0005343 | Ga0466968_0005343_581_2458 | 579 |
| 5 | iso_pu_bacteria | 8055632911 | 8055636598 | 596 |
| 6 | 3300037312 | Ga0395899_0009187 | Ga0395899_0009187_4702_6675 | 623 |
| 7 | 3300046519 | Ga0495632_0000011 | Ga0495632_0000011_264077_266101 | 636 |
| 8 | 3300017792 | Ga0163161_10005751 | Ga0163161_100057515 | 643 |
| 9 | 3300005843 | Ga0068860_100000012 | Ga0068860_10000001227 | 644 |
| 10 | 3300005844 | Ga0068862_100003080 | Ga0068862_1000030805 | 644 |
| 11 | 3300028380 | Ga0268265_10040420 | Ga0268265_100404202 | 644 |
| 12 | 3300028381 | Ga0268264_10000292 | Ga0268264_100002929 | 644 |
| 13 | iso_pu_bacteria | 2600254954 | 2600442441 | 644 |
| 14 | iso_pu_bacteria | 2600255389 | 2602009599 | 644 |
| 15 | iso_pu_bacteria | 2823421272 | 2823424541 | 644 |
| 16 | iso_pu_bacteria | 2919501602 | 2919504275 | 644 |
| 17 | iso_pu_bacteria | 2926063275 | 2926065152 | 644 |
| 18 | iso_pu_bacteria | 8034962539 | 8034967149 | 644 |
| 19 | 3300046539 | Ga0495621_0011733 | Ga0495621_0011733_397_2355 | 645 |
| 20 | iso_pu_bacteria | 2747842501 | 2748017178 | 646 |
| 21 | iso_pu_bacteria | 8002745576 | 8002749162 | 646 |
| 22 | 3300046691 | Ga0495670_0000034 | Ga0495670_0000034_63165_65165 | 647 |
| 23 | 3300047317 | Ga0495604_0023588 | Ga0495604_0023588_2421_4382 | 647 |
| 24 | 3300049580 | Ga0501046_0005504 | Ga0501046_0005504_8120_10081 | 647 |
| 25 | 3300031548 | Ga0307408_100000304 | Ga0307408_10000030438 | 648 |
| 26 | 3300002774 | JGI25150J39212_1000073 | JGI25150J39212_100007316 | 649 |
| 27 | 3300002774 | JGI25150J39212_1000207 | JGI25150J39212_100020711 | 649 |
| 28 | 3300003215 | JGI25153J46596_10000038 | JGI25153J46596_1000003827 | 649 |
| 29 | 3300003771 | Ga0055526_1005367 | Ga0055526_10053675 | 649 |
| 30 | 3300003792 | Ga0055540_1004251 | Ga0055540_10042513 | 649 |
| 31 | 3300025245 | Ga0207425_1000016 | Ga0207425_1000016230 | 649 |
| 32 | 3300025258 | Ga0209129_1000388 | Ga0209129_10003885 | 649 |
| 33 | 3300025292 | Ga0209676_1006635 | Ga0209676_10066352 | 649 |
| 34 | 3300025294 | Ga0209025_1000400 | Ga0209025_10004006 | 649 |
| 35 | 3300025295 | Ga0209564_1000673 | Ga0209564_100067329 | 649 |
| 36 | 3300025297 | Ga0209758_1000009 | Ga0209758_1000009471 | 649 |
| 37 | 3300025298 | Ga0209050_1000005 | Ga0209050_1000005700 | 649 |
| 38 | 3300025298 | Ga0209050_1013411 | Ga0209050_10134113 | 649 |
| 39 | 3300025303 | Ga0209051_1012233 | Ga0209051_10122332 | 649 |
| 40 | 3300025304 | Ga0209257_1001941 | Ga0209257_100194114 | 649 |
| 41 | 3300025304 | Ga0209257_1001956 | Ga0209257_100195614 | 649 |
| 42 | 3300049573 | Ga0501037_0024109 | Ga0501037_0024109_2149_4140 | 649 |
| 43 | 3300006948 | Ga0099826_10000004 | Ga0099826_10000004563 | 650 |
| 44 | 3300027666 | Ga0209282_1000015 | Ga0209282_100001569 | 650 |
| 45 | 3300047472 | Ga0495686_0000028 | Ga0495686_0000028_230539_232536 | 650 |
| 46 | 3300048921 | Ga0496118_0000803 | Ga0496118_0000803_29793_31790 | 650 |
| 47 | 3300046506 | Ga0495583_0000003 | Ga0495583_0000003_1903_3876 | 651 |
| 48 | 3300046512 | Ga0495610_0014377 | Ga0495610_0014377_555_2531 | 651 |
| 49 | 3300048918 | Ga0496115_0004443 | Ga0496115_0004443_965_2941 | 651 |
| 50 | 3300053136 | Ga0500559_0000058 | Ga0500559_0000058_27832_29805 | 651 |
| 51 | 3300032126 | Ga0307415_100031417 | Ga0307415_1000314172 | 653 |
| 52 | 3300046512 | Ga0495610_0000131 | Ga0495610_0000131_20606_22603 | 653 |
| 53 | 3300046522 | Ga0495643_0000004 | Ga0495643_0000004_502022_504019 | 653 |
| 54 | 3300046524 | Ga0495648_0001207 | Ga0495648_0001207_23195_25195 | 653 |
| 55 | iso_pu_bacteria | 2738541293 | 2738800481 | 653 |
| 56 | 3300039437 | Ga0436365_0981578 | Ga0436365_0981578_604_2586 | 654 |
| 57 | 3300049570 | Ga0501033_0012206 | Ga0501033_0012206_603_2585 | 654 |
| 58 | 3300049581 | Ga0501047_0006048 | Ga0501047_0006048_8812_10794 | 654 |
| 59 | 3300049581 | Ga0501047_0067691 | Ga0501047_0067691_1059_3041 | 654 |
| 60 | iso_pu_bacteria | 2885429604 | 2885431816 | 654 |
| 61 | 3300003578 | Ga0006562J51391_1005855 | Ga0006562J51391_10058552 | 655 |
| 62 | 3300009092 | Ga0105250_10000005 | Ga0105250_10000005216 | 655 |
| 63 | 3300014968 | Ga0157379_10000199 | Ga0157379_1000019935 | 655 |
| 64 | 3300025711 | Ga0207696_1000181 | Ga0207696_100018145 | 655 |
| 65 | 3300031911 | Ga0307412_10001031 | Ga0307412_1000103111 | 655 |
| 66 | iso_pu_bacteria | 2884338543 | 2884338619 | 655 |
| 67 | iso_pu_bacteria | 2941471342 | 2941475219 | 655 |
| 68 | 3300005614 | Ga0068856_100006254 | Ga0068856_1000062542 | 656 |
| 69 | 3300049581 | Ga0501047_0018727 | Ga0501047_0018727_897_2885 | 656 |
| 70 | 3300049742 | Ga0501080_0000625 | Ga0501080_0000625_9771_11759 | 656 |
| 71 | iso_pu_bacteria | 2582581304 | 2585257782 | 656 |
| 72 | iso_pu_bacteria | 2585427594 | 2585845313 | 656 |
| 73 | iso_pu_bacteria | 2599185156 | 2599335854 | 656 |
| 74 | iso_pu_bacteria | 2643221622 | 2644126214 | 656 |
| 75 | iso_pu_bacteria | 2643221699 | 2644548440 | 656 |
| 76 | iso_pu_bacteria | 2818991461 | 2819682928 | 656 |
| 77 | iso_pu_bacteria | 2842922631 | 2842926994 | 656 |
| 78 | iso_pu_bacteria | 2852387548 | 2852387787 | 656 |
| 79 | iso_pu_bacteria | 2894817345 | 2894822192 | 656 |
| 80 | iso_pu_bacteria | 2895880812 | 2895882106 | 656 |
| 81 | iso_pu_bacteria | 2919085039 | 2919085355 | 656 |
| 82 | 3300031901 | Ga0307406_10013073 | Ga0307406_100130733 | 657 |
| 83 | 3300039438 | Ga0436360_0934711 | Ga0436360_0934711_1938_3938 | 657 |
| 84 | 3300046512 | Ga0495610_0000250 | Ga0495610_0000250_39973_41964 | 657 |
| 85 | 3300046515 | Ga0495620_0027655 | Ga0495620_0027655_314_2305 | 657 |
| 86 | 3300048919 | Ga0496116_0006977 | Ga0496116_0006977_3413_5404 | 657 |
| 87 | 3300048920 | Ga0496117_0007233 | Ga0496117_0007233_8346_10337 | 657 |
| 88 | 3300048927 | Ga0496124_0002161 | Ga0496124_0002161_4055_6046 | 657 |
| 89 | iso_pu_bacteria | 2643221547 | 2643757470 | 657 |
| 90 | iso_pu_bacteria | 2842482326 | 2842487332 | 657 |
| 91 | iso_pu_bacteria | 2842509118 | 2842514598 | 657 |
| 92 | iso_pu_bacteria | 8005484373 | 8005484392 | 657 |
| 93 | 3300003794 | Ga0055531_10002135 | Ga0055531_100021356 | 658 |
| 94 | 3300005262 | Ga0065165_1000030 | Ga0065165_100003089 | 658 |
| 95 | 3300025297 | Ga0209758_1001503 | Ga0209758_100150311 | 658 |
| 96 | 3300025298 | Ga0209050_1000169 | Ga0209050_100016958 | 658 |
| 97 | 3300025304 | Ga0209257_1000287 | Ga0209257_100028758 | 658 |
| 98 | 3300032005 | Ga0307411_10032257 | Ga0307411_100322572 | 658 |
| 99 | 3300049571 | Ga0501034_0005872 | Ga0501034_0005872_8596_10593 | 658 |
| 100 | 3300049686 | Ga0501257_000883 | Ga0501257_000883_440_2434 | 658 |
| 101 | 3300053140 | Ga0500573_0000021 | Ga0500573_0000021_27242_29236 | 658 |
| 102 | iso_pu_bacteria | 2643221663 | 2644352182 | 658 |
| 103 | 3300005289 | Ga0065704_10083757 | Ga0065704_100837574 | 659 |
| 104 | 3300005327 | Ga0070658_10010378 | Ga0070658_100103783 | 659 |
| 105 | 3300005347 | Ga0070668_100002241 | Ga0070668_10000224110 | 659 |
| 106 | 3300005353 | Ga0070669_100001467 | Ga0070669_1000014676 | 659 |
| 107 | 3300005355 | Ga0070671_100016021 | Ga0070671_1000160215 | 659 |
| 108 | 3300005548 | Ga0070665_100000101 | Ga0070665_10000010134 | 659 |
| 109 | 3300005563 | Ga0068855_100026143 | Ga0068855_1000261433 | 659 |
| 110 | 3300005616 | Ga0068852_100003121 | Ga0068852_1000031215 | 659 |
| 111 | 3300005844 | Ga0068862_100013492 | Ga0068862_1000134922 | 659 |
| 112 | 3300009011 | Ga0105251_10003391 | Ga0105251_100033914 | 659 |
| 113 | 3300009101 | Ga0105247_10031590 | Ga0105247_100315903 | 659 |
| 114 | 3300009174 | Ga0105241_10017837 | Ga0105241_100178372 | 659 |
| 115 | 3300009177 | Ga0105248_10016115 | Ga0105248_100161157 | 659 |
| 116 | 3300010375 | Ga0105239_10081726 | Ga0105239_100817264 | 659 |
| 117 | 3300013102 | Ga0157371_10014909 | Ga0157371_100149094 | 659 |
| 118 | 3300013105 | Ga0157369_10030435 | Ga0157369_100304354 | 659 |
| 119 | 3300013105 | Ga0157369_10039012 | Ga0157369_100390122 | 659 |
| 120 | 3300013308 | Ga0157375_10005255 | Ga0157375_1000525510 | 659 |
| 121 | 3300014325 | Ga0163163_10058370 | Ga0163163_100583704 | 659 |
| 122 | 3300025904 | Ga0207647_10000002 | Ga0207647_10000002278 | 659 |
| 123 | 3300025923 | Ga0207681_10000186 | Ga0207681_1000018623 | 659 |
| 124 | 3300025931 | Ga0207644_10011842 | Ga0207644_100118423 | 659 |
| 125 | 3300025941 | Ga0207711_10025799 | Ga0207711_100257994 | 659 |
| 126 | 3300025949 | Ga0207667_10005925 | Ga0207667_100059252 | 659 |
| 127 | 3300025949 | Ga0207667_10083719 | Ga0207667_100837192 | 659 |
| 128 | 3300025972 | Ga0207668_10041476 | Ga0207668_100414763 | 659 |
| 129 | 3300025986 | Ga0207658_10006391 | Ga0207658_100063918 | 659 |
| 130 | 3300026078 | Ga0207702_10013539 | Ga0207702_100135393 | 659 |
| 131 | 3300026142 | Ga0207698_10026292 | Ga0207698_100262922 | 659 |
| 132 | 3300028379 | Ga0268266_10000314 | Ga0268266_1000031450 | 659 |
| 133 | 3300028381 | Ga0268264_10002628 | Ga0268264_100026288 | 659 |
| 134 | 3300047472 | Ga0495686_0000164 | Ga0495686_0000164_110598_112595 | 659 |
| 135 | 3300048917 | Ga0496114_0007473 | Ga0496114_0007473_2387_4384 | 659 |
| 136 | 3300048919 | Ga0496116_0042794 | Ga0496116_0042794_948_2945 | 659 |
| 137 | 3300048920 | Ga0496117_0005115 | Ga0496117_0005115_4774_6771 | 659 |
| 138 | 3300048920 | Ga0496117_0008020 | Ga0496117_0008020_3642_5639 | 659 |
| 139 | 3300048921 | Ga0496118_0000608 | Ga0496118_0000608_34554_36551 | 659 |
| 140 | 3300048921 | Ga0496118_0008544 | Ga0496118_0008544_7390_9387 | 659 |
| 141 | 3300048922 | Ga0496119_0012434 | Ga0496119_0012434_1025_3022 | 659 |
| 142 | 3300048924 | Ga0496121_0000246 | Ga0496121_0000246_52858_54855 | 659 |
| 143 | 3300048925 | Ga0496122_0047278 | Ga0496122_0047278_916_2913 | 659 |
| 144 | 3300048929 | Ga0496126_0025712 | Ga0496126_0025712_2732_4729 | 659 |
| 145 | 3300049823 | Ga0501044_0076075 | Ga0501044_0076075_1013_3010 | 659 |
| 146 | 3300002773 | JGI25152J39213_1001252 | JGI25152J39213_10012528 | 660 |
| 147 | 3300002774 | JGI25150J39212_1000142 | JGI25150J39212_100014233 | 660 |
| 148 | 3300002774 | JGI25150J39212_1000230 | JGI25150J39212_10002305 | 660 |
| 149 | 3300003187 | JGI25151J46595_10000031 | JGI25151J46595_10000031141 | 660 |
| 150 | 3300003215 | JGI25153J46596_10000927 | JGI25153J46596_100009275 | 660 |
| 151 | 3300003773 | Ga0055537_1001276 | Ga0055537_10012765 | 660 |
| 152 | 3300003775 | Ga0055524_1000276 | Ga0055524_100027637 | 660 |
| 153 | 3300003791 | Ga0055530_10000521 | Ga0055530_1000052117 | 660 |
| 154 | 3300005262 | Ga0065165_1002026 | Ga0065165_10020262 | 660 |
| 155 | 3300005262 | Ga0065165_1003761 | Ga0065165_10037614 | 660 |
| 156 | 3300013104 | Ga0157370_10000193 | Ga0157370_1000019356 | 660 |
| 157 | 3300015265 | Ga0182005_1000004 | Ga0182005_1000004252 | 660 |
| 158 | 3300025245 | Ga0207425_1000070 | Ga0207425_100007078 | 660 |
| 159 | 3300025245 | Ga0207425_1002304 | Ga0207425_10023045 | 660 |
| 160 | 3300025258 | Ga0209129_1000172 | Ga0209129_100017278 | 660 |
| 161 | 3300025258 | Ga0209129_1000232 | Ga0209129_100023237 | 660 |
| 162 | 3300025263 | Ga0209565_1000008 | Ga0209565_1000008447 | 660 |
| 163 | 3300025273 | Ga0209673_1002045 | Ga0209673_100204514 | 660 |
| 164 | 3300025273 | Ga0209673_1004202 | Ga0209673_10042027 | 660 |
| 165 | 3300025294 | Ga0209025_1000083 | Ga0209025_1000083185 | 660 |
| 166 | 3300025297 | Ga0209758_1000090 | Ga0209758_100009078 | 660 |
| 167 | 3300025297 | Ga0209758_1002052 | Ga0209758_10020526 | 660 |
| 168 | 3300025298 | Ga0209050_1000010 | Ga0209050_1000010174 | 660 |
| 169 | 3300025298 | Ga0209050_1010752 | Ga0209050_10107522 | 660 |
| 170 | 3300025299 | Ga0209256_1000009 | Ga0209256_1000009424 | 660 |
| 171 | 3300025299 | Ga0209256_1000010 | Ga0209256_1000010348 | 660 |
| 172 | 3300025304 | Ga0209257_1000009 | Ga0209257_1000009941 | 660 |
| 173 | 3300026116 | Ga0207674_10063158 | Ga0207674_100631582 | 660 |
| 174 | 3300031731 | Ga0307405_10008120 | Ga0307405_100081205 | 660 |
| 175 | 3300031731 | Ga0307405_10017395 | Ga0307405_100173952 | 660 |
| 176 | 3300031824 | Ga0307413_10012494 | Ga0307413_100124945 | 660 |
| 177 | 3300031852 | Ga0307410_10004525 | Ga0307410_100045253 | 660 |
| 178 | 3300031903 | Ga0307407_10001118 | Ga0307407_100011187 | 660 |
| 179 | 3300031995 | Ga0307409_100002657 | Ga0307409_1000026575 | 660 |
| 180 | 3300031995 | Ga0307409_100018557 | Ga0307409_1000185572 | 660 |
| 181 | 3300032004 | Ga0307414_10026214 | Ga0307414_100262142 | 660 |
| 182 | 3300032005 | Ga0307411_10002468 | Ga0307411_100024683 | 660 |
| 183 | 3300032126 | Ga0307415_100027641 | Ga0307415_1000276413 | 660 |
| 184 | 3300033180 | Ga0307510_10008747 | Ga0307510_100087477 | 660 |
| 185 | 3300042006 | Ga0439432_001838 | Ga0439432_001838_5078_7078 | 660 |
| 186 | 3300042435 | Ga0439434_0000210 | Ga0439434_0000210_9890_11890 | 660 |
| 187 | 3300047472 | Ga0495686_0000661 | Ga0495686_0000661_20352_22352 | 660 |
| 188 | 3300047472 | Ga0495686_0003752 | Ga0495686_0003752_2956_4956 | 660 |
| 189 | 3300048919 | Ga0496116_0005234 | Ga0496116_0005234_4340_6340 | 660 |
| 190 | 3300048920 | Ga0496117_0018675 | Ga0496117_0018675_3392_5392 | 660 |
| 191 | 3300048924 | Ga0496121_0033869 | Ga0496121_0033869_1553_3553 | 660 |
| 192 | 3300048925 | Ga0496122_0041456 | Ga0496122_0041456_1553_3589 | 660 |
| 193 | 3300048926 | Ga0496123_0007763 | Ga0496123_0007763_4763_6763 | 660 |
| 194 | 3300048928 | Ga0496125_0010823 | Ga0496125_0010823_3009_5009 | 660 |
| 195 | 3300053087 | Ga0500643_000828 | Ga0500643_000828_7803_9803 | 660 |
| 196 | 3300053094 | Ga0500566_0000089 | Ga0500566_0000089_11883_13883 | 660 |
| 197 | 3300053125 | Ga0500618_006630 | Ga0500618_006630_1059_3128 | 660 |
| 198 | 3300002737 | JGI25162J39368_1002521 | JGI25162J39368_10025216 | 661 |
| 199 | 3300003794 | Ga0055531_10000203 | Ga0055531_1000020351 | 661 |
| 200 | 3300025233 | Ga0209437_100205 | Ga0209437_1002052 | 661 |
| 201 | 3300025261 | Ga0209233_1000187 | Ga0209233_100018722 | 661 |
| 202 | 3300025298 | Ga0209050_1003178 | Ga0209050_10031787 | 661 |
| 203 | 3300025304 | Ga0209257_1000017 | Ga0209257_1000017647 | 661 |
| 204 | 3300046471 | Ga0495650_0000001 | Ga0495650_0000001_1059921_1061924 | 661 |
| 205 | 3300049161 | Ga0501305_000130 | Ga0501305_000130_1498_3513 | 661 |
| 206 | 3300049528 | Ga0501312_000188 | Ga0501312_000188_769_2784 | 661 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 8f68-assembly1.cif.gz_A | e. coli cytochrome bo3 ubiquinol oxidase monomer | 0.9732 | 11 | 661 |
| 8f68-assembly1.cif.gz_A | e. coli cytochrome bo3 ubiquinol oxidase monomer | 0.9616 | 11 | 661 |
| 1fft-assembly2.cif.gz_F | the structure of ubiquinol oxidase from escherichia coli | 0.9444 | 63 | 556 |
| 7qhm-assembly1.cif.gz_Q | cytochrome bcc-aa3 supercomplex (respiratory supercomplex iii2/iv2) from corynebacterium glutamicum (stigmatellin and azide bound) | 0.9396 | 62 | 574 |
| 3omi-assembly2.cif.gz_C | catalytic core subunits (i and ii) of cytochrome c oxidase from rhodobacter sphaeroides with d132a mutation | 0.9382 | 58 | 552 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P03878_1_258_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9555 | 58 | 303 | 1.20.210.10 |
| af_Q9ZZX1_1_342_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9505 | 58 | 381 | 1.20.210.10 |
| af_Q2FZK0_30_556_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9427 | 42 | 560 | 1.20.210.10 |
| af_P9WP71_20_544_1.20.210.10 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9394 | 59 | 567 | 1.20.210.10 |
| 2yevD01 | Mainly Alpha;Up-down Bundle;Cytochrome C Oxidase; Chain A;Cytochrome c oxidase-like, subunit I domain | 0.9319 | 51 | 565 | 1.20.210.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A359KEF2-F1-model_v4 | Cytochrome o ubiquinol oxidase subunit I | 0.9924 | 50 | 289 |
GO:0004129
GO:0005886 GO:0009060 GO:0009486 GO:0015990 GO:0020037 GO:0022904 |
| AF-W7W9S8-F1-model_v4 | Ubiquinol oxidase subunit 1 (EC 1.10.3.-) | 0.9853 | 89 | 324 |
GO:0004129
GO:0005886 GO:0009060 GO:0009486 GO:0015990 GO:0020037 GO:0022904 |
| AF-A0A359KEF2-F1-model_v4 | Cytochrome o ubiquinol oxidase subunit I | 0.9843 | 50 | 289 |
GO:0004129
GO:0005886 GO:0009060 GO:0009486 GO:0015990 GO:0020037 GO:0022904 |
| AF-A0A1B3TTM9-F1-model_v4 | Cytochrome c oxidase subunit 1 (EC 7.1.1.9) | 0.9761 | 108 | 273 |
GO:0004129
GO:0005743 GO:0006123 GO:0015990 GO:0020037 GO:0046872 |
| AF-Q198M8-F1-model_v4 | Cytochrome c oxidase subunit 1 (EC 7.1.1.9) | 0.9749 | 106 | 254 |
GO:0004129
GO:0005743 GO:0006119 GO:0020037 GO:0046872 |
Predicted Structure (AlphaFold2)
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