F315379

General Info

Members Datasets Scaffolds Average Seq Length
206 133 412 287

Family's Representative Sequence

Representative Sequence 3300037312|Ga0395899_0037051|Ga0395899_0037051_483_1472
Length 329
Sequence MVVGVSLAICLRLDDGSRAGCVTGERGHIHDRSYVVLGEMRDRDFLGARFEEERPQLRRIAYRMLGTVDEAEDAVQEAWLRLNRTDESSVQNLGAWLTTVVSRVCLDMLRARRSRREEFVGSWMPEPIVTLDDHPSPEDEALIADGVGLALYVVLETLSPAERLAFVLHDMFAMPFDEIATIVRRSPDAARQLASRARRRVRGANPERDVDLTAQQRVADAFFVASRDGDFDALVELLDPEVTLRVDAGPDSPLAHPPIVGRAAVLAEARRWADMAPLGRPAIVNGAAGGVIGPSGRPFAVVGITVANGRITALDFLLDPAKLARITIS

Samples

Sample ID Description Type Environment
1 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
30 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
35 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
51 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
52 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
53 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
54 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
82 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
83 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
84 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
85 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
86 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
87 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
88 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
90 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
91 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
92 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
93 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
96 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
97 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
98 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
99 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
100 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
101 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
102 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
103 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
104 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
105 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
106 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
107 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
108 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
109 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
110 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
111 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
112 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
115 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
116 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
119 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
120 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
121 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
122 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
125 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
126 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
127 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
128 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
129 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
130 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
131 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
132 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
133 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.66
Metatranscriptomes 0.97
Isolates 4.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.4
Nodule 0
Rhizoplane 5.34
Rhizosphere 86.89
Stem 0
Stem Tuber 0
Unclassified 2.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395899_0037051 3300037312 Bacteria 3657
2 Ga0070683_100076717 3300005329 Bacteria 3124
3 Ga0070683_100319601 3300005329 Bacteria 1477
4 Ga0070690_100018982 3300005330 Bacteria 4164
5 Ga0070666_10003234 3300005335 Bacteria 9891
6 Ga0068868_100131048 3300005338 Bacteria 2052
7 Ga0070691_10079749 3300005341 Bacteria 1600
8 Ga0070714_100002164 3300005435 Bacteria 14433
9 Ga0070714_100010048 3300005435 Bacteria 7466
10 Ga0070713_100515015 3300005436 Bacteria 1130
11 Ga0070710_10012857 3300005437 Bacteria 4171
12 Ga0070700_100019628 3300005441 Bacteria 3904
13 Ga0070700_100359701 3300005441 Bacteria 1082
14 Ga0070678_100109874 3300005456 Bacteria 2155
15 Ga0068867_100090911 3300005459 Bacteria 2316
16 Ga0070684_100008495 3300005535 Bacteria 8031
17 Ga0070684_100029481 3300005535 Bacteria 4651
18 Ga0070684_100072435 3300005535 Bacteria 3033
19 Ga0068853_100437084 3300005539 Bacteria 1229
20 Ga0070686_100000232 3300005544 Bacteria 38298
21 Ga0068855_100305197 3300005563 Bacteria 1762
22 Ga0070664_100145093 3300005564 Bacteria 2093
23 Ga0068857_100201329 3300005577 Bacteria 1815
24 Ga0068854_100009514 3300005578 Bacteria 6276
25 Ga0068852_100205590 3300005616 Bacteria 1865
26 Ga0068859_100265892 3300005617 Unclassified 1807
27 Ga0068861_100062285 3300005719 Bacteria 2865
28 Ga0068863_100062552 3300005841 Bacteria 3520
29 Ga0068858_100135910 3300005842 Unclassified 2307
30 Ga0081455_10014346 3300005937 Bacteria 7773
31 Ga0081538_10000302 3300005981 Bacteria 56858
32 Ga0081538_10002562 3300005981 Bacteria 17661
33 Ga0081539_10017532 3300005985 Bacteria 5021
34 Ga0075365_10022446 3300006038 Bacteria 3954
35 Ga0075365_10104729 3300006038 Bacteria 1940
36 Ga0075364_10039125 3300006051 Bacteria 3073
37 Ga0070712_100129200 3300006175 Bacteria 1913
38 Ga0070712_100167349 3300006175 Bacteria 1703
39 Ga0075367_10002384 3300006178 Bacteria 8557
40 Ga0097621_100050537 3300006237 Bacteria 3381
41 Ga0075370_10039874 3300006353 Bacteria 2648
42 Ga0075428_100178698 3300006844 Bacteria 2298
43 Ga0068865_100029805 3300006881 Bacteria 3624
44 Ga0097620_100265892 3300006931 Unclassified 1807
45 Ga0075435_100148157 3300007076 Bacteria 1972
46 Ga0105240_10042860 3300009093 Bacteria 5765
47 Ga0111539_10075403 3300009094 Bacteria 3973
48 Ga0105245_10096092 3300009098 Bacteria 2734
49 Ga0105242_10038969 3300009176 Bacteria 3824
50 Ga0105237_10014477 3300009545 Bacteria 8244
51 Ga0105237_10365277 3300009545 Bacteria 1448
52 Ga0105238_10226620 3300009551 Bacteria 1846
53 Ga0105249_10045524 3300009553 Bacteria 3991
54 Ga0105249_10558304 3300009553 Bacteria 1196
55 Ga0105249_10650322 3300009553 Bacteria 1112
56 Ga0157373_10250969 3300013100 Bacteria 1251
57 Ga0157369_10018427 3300013105 Bacteria 7828
58 Ga0157378_10127759 3300013297 Bacteria 2350
59 Ga0157372_10582044 3300013307 Bacteria 1305
60 Ga0163163_10220717 3300014325 Bacteria 1944
61 Ga0163163_10319937 3300014325 Unclassified 1605
62 Ga0157380_10058573 3300014326 Bacteria 3071
63 Ga0182008_10001349 3300014497 Bacteria 16696
64 Ga0157377_10109428 3300014745 Unclassified 1659
65 Ga0157376_10110688 3300014969 Bacteria 2417
66 Ga0206354_10678195 3300020081 Bacteria 1256
67 Ga0206353_11609671 3300020082 Bacteria 8630
68 Ga0207692_10075963 3300025898 Bacteria 1783
69 Ga0207671_10054653 3300025914 Bacteria 2958
70 Ga0207693_10100222 3300025915 Bacteria 2271
71 Ga0207663_10019768 3300025916 Bacteria 3802
72 Ga0207652_10193139 3300025921 Bacteria 1831
73 Ga0207681_10042585 3300025923 Bacteria 3034
74 Ga0207700_10388736 3300025928 Bacteria 1221
75 Ga0207664_10090199 3300025929 Bacteria 2511
76 Ga0207664_10271739 3300025929 Bacteria 1485
77 Ga0207706_10048332 3300025933 Bacteria 3763
78 Ga0207704_10033326 3300025938 Bacteria 2927
79 Ga0207665_10099736 3300025939 Bacteria 2026
80 Ga0207661_10265107 3300025944 Bacteria 1531
81 Ga0207661_10439021 3300025944 Bacteria 1188
82 Ga0207679_10066490 3300025945 Bacteria 2701
83 Ga0207667_10277636 3300025949 Bacteria 1712
84 Ga0207712_10023582 3300025961 Bacteria 4063
85 Ga0207640_10023976 3300025981 Bacteria 3674
86 Ga0207677_10056804 3300026023 Bacteria 2684
87 Ga0207639_10652824 3300026041 Bacteria 973
88 Ga0207708_10038321 3300026075 Bacteria 3651
89 Ga0207708_10068653 3300026075 Bacteria 2713
90 Ga0207708_10218416 3300026075 Bacteria 1526
91 Ga0207702_10153187 3300026078 Bacteria 2099
92 Ga0207641_10029919 3300026088 Bacteria 4506
93 Ga0207674_10291712 3300026116 Bacteria 1580
94 Ga0207675_100038260 3300026118 Bacteria 4476
95 Ga0207675_100042500 3300026118 Bacteria 4244
96 Ga0207675_100551269 3300026118 Bacteria 1152
97 Ga0207683_10099600 3300026121 Bacteria 2594
98 Ga0207683_10252878 3300026121 Bacteria 1608
99 Ga0207698_10130847 3300026142 Bacteria 2144
100 Ga0207698_10683434 3300026142 Bacteria 1020
101 Ga0307410_10004452 3300031852 Bacteria 7245
102 Ga0307407_10276905 3300031903 Bacteria 1160
103 Ga0307411_10109885 3300032005 Bacteria 1970
104 Ga0307507_10012902 3300033179 Bacteria 10245
105 Ga0373949_0001622 3300035090 Bacteria 6286
106 Ga0373955_0151120 3300035172 Bacteria 1367
107 Ga0373935_0087191 3300035692 Bacteria 2038
108 Ga0373937_0052950 3300036401 Bacteria 3723
109 Ga0373925_0269917 3300037068 Bacteria 1368
110 Ga0395899_0024045 3300037312 Bacteria 4608
111 Ga0395899_0060644 3300037312 Bacteria 2787
112 Ga0395900_0078116 3300037418 Bacteria 3401
113 Ga0395900_0165835 3300037418 Bacteria 2251
114 Ga0395898_0027293 3300037466 Bacteria 5734
115 Ga0395898_0030859 3300037466 Bacteria 5361
116 Ga0395905_0054925 3300037471 Bacteria 3727
117 Ga0395905_0133816 3300037471 Bacteria 2332
118 Ga0395905_0148038 3300037471 Bacteria 2209
119 Ga0395905_0220446 3300037471 Bacteria 1775
120 Ga0395905_0465725 3300037471 Bacteria 1162
121 Ga0395901_0009979 3300038443 Bacteria 9623
122 Ga0395901_0022227 3300038443 Bacteria 6498
123 Ga0395901_0025217 3300038443 Bacteria 6104
124 Ga0395901_0038819 3300038443 Bacteria 4925
125 Ga0395901_0269518 3300038443 Bacteria 1771
126 Ga0395901_0506577 3300038443 Bacteria 1228
127 Ga0436365_0757905 3300039437 Bacteria 1934
128 Ga0466969_0000332 3300044656 Bacteria 26121
129 Ga0466972_0069221 3300044658 Bacteria 1686
130 Ga0466972_0150589 3300044658 Bacteria 1094
131 Ga0466965_0042213 3300044683 Bacteria 2249
132 Ga0466966_0136953 3300044684 Bacteria 1497
133 Ga0466966_0292759 3300044684 Bacteria 979
134 Ga0466961_0003317 3300044693 Bacteria 10040
135 Ga0466961_0009243 3300044693 Bacteria 6276
136 Ga0466961_0160659 3300044693 Bacteria 1400
137 Ga0466961_0351439 3300044693 Bacteria 897
138 Ga0466963_0001638 3300044694 Bacteria 12199
139 Ga0466963_0011284 3300044694 Bacteria 5436
140 Ga0466963_0014281 3300044694 Bacteria 4894
141 Ga0466963_0023024 3300044694 Bacteria 3951
142 Ga0466963_0092997 3300044694 Bacteria 2055
143 Ga0466963_0283943 3300044694 Bacteria 1163
144 Ga0466964_0010907 3300044706 Bacteria 3433
145 Ga0466964_0038433 3300044706 Bacteria 1924
146 Ga0466964_0061637 3300044706 Bacteria 1562
147 Ga0466968_0009754 3300044735 Bacteria 3703
148 Ga0466970_0016386 3300044765 Bacteria 3819
149 Ga0466970_0233726 3300044765 Bacteria 1028
150 Ga0466957_0028571 3300044842 Bacteria 3321
151 Ga0466957_0063121 3300044842 Bacteria 2276
152 Ga0466957_0253219 3300044842 Bacteria 1171
153 Ga0466957_0275092 3300044842 Bacteria 1125
154 Ga0466960_0011082 3300044901 Bacteria 3758
155 Ga0466960_0101082 3300044901 Bacteria 1485
156 Ga0466959_0001014 3300045049 Bacteria 16709
157 Ga0466959_0028549 3300045049 Bacteria 4137
158 Ga0466958_0031047 3300045836 Bacteria 3176
159 Ga0466958_0041076 3300045836 Bacteria 2781
160 Ga0466958_0046116 3300045836 Bacteria 2630
161 Ga0466958_0057363 3300045836 Bacteria 2366
162 Ga0466958_0167027 3300045836 Bacteria 1392
163 Ga0466967_0004841 3300045976 Bacteria 9186
164 Ga0466967_0007433 3300045976 Bacteria 7902
165 Ga0466967_0012870 3300045976 Bacteria 6430
166 Ga0466967_0019562 3300045976 Bacteria 5448
167 Ga0466967_0027921 3300045976 Bacteria 4703
168 Ga0466967_0037731 3300045976 Bacteria 4138
169 Ga0466967_0071764 3300045976 Bacteria 3101
170 Ga0466967_0137848 3300045976 Bacteria 2270
171 Ga0466967_0138152 3300045976 Bacteria 2268
172 Ga0466967_0169668 3300045976 Bacteria 2052
173 Ga0466967_0186063 3300045976 Bacteria 1961
174 Ga0466967_0198913 3300045976 Bacteria 1897
175 Ga0466967_0212008 3300045976 Bacteria 1837
176 Ga0466967_0255375 3300045976 Bacteria 1676
177 Ga0466967_0269739 3300045976 Bacteria 1630
178 Ga0496102_0038192 3300048905 Bacteria 4332
179 Ga0496102_0085274 3300048905 Bacteria 2916
180 Ga0496102_0087811 3300048905 Bacteria 2873
181 Ga0496103_0062342 3300048906 Bacteria 2321
182 Ga0496104_0207111 3300048907 Bacteria 1873
183 Ga0496108_0202731 3300048911 Bacteria 1722
184 Ga0496109_0301083 3300048912 Bacteria 1512
185 Ga0496111_0195300 3300048914 Bacteria 1504
186 Ga0496112_0025711 3300048915 Bacteria 5654
187 Ga0496114_0349132 3300048917 Bacteria 1308
188 Ga0496114_0411299 3300048917 Bacteria 1198
189 Ga0501048_0125067 3300049582 Bacteria 1818
190 Ga0501069_0031150 3300049585 Bacteria 2932
191 Ga0501070_0409329 3300049586 Bacteria 1096
192 nmdc:mga00v17_32554_c1 3300050491 Bacteria 3083
193 nmdc:mga06z11_7941_c1 3300050494 Bacteria 4395
194 nmdc:mga05p37_464215_c1 3300050507 Bacteria 1462
195 nmdc:mga08y16_103589_c1 3300050511 Bacteria 2963
196 nmdc:mga0rr50_324682_c1 3300050513 Bacteria 1291
197 nmdc:mga0rr50_639722_c1 3300050513 Bacteria 907
198 2552109512 2551306166 Bacteria 9731570
199 2644015005 2643221601 Bacteria 7493239
200 2644176909 2643221631 Bacteria 8168043
201 2753039680 2751185725 Bacteria 5740550
202 2753328189 2751185792 Bacteria 5739090
203 2816504822 2816332139 Bacteria 9138787
204 8008486828 8008485437 Bacteria 7198341
205 8025526085 8025524527 Bacteria 7197316
206 8056211827 8056207758 Bacteria 8639239
207 Ga0395899_0037051
208 Ga0070683_100076717
209 Ga0070683_100319601
210 Ga0070690_100018982
211 Ga0070666_10003234
212 Ga0068868_100131048
213 Ga0070691_10079749
214 Ga0070714_100002164
215 Ga0070714_100010048
216 Ga0070713_100515015
217 Ga0070710_10012857
218 Ga0070700_100019628
219 Ga0070700_100359701
220 Ga0070678_100109874
221 Ga0068867_100090911
222 Ga0070684_100008495
223 Ga0070684_100029481
224 Ga0070684_100072435
225 Ga0068853_100437084
226 Ga0070686_100000232
227 Ga0068855_100305197
228 Ga0070664_100145093
229 Ga0068857_100201329
230 Ga0068854_100009514
231 Ga0068852_100205590
232 Ga0068859_100265892
233 Ga0068861_100062285
234 Ga0068863_100062552
235 Ga0068858_100135910
236 Ga0081455_10014346
237 Ga0081538_10000302
238 Ga0081538_10002562
239 Ga0081539_10017532
240 Ga0075365_10022446
241 Ga0075365_10104729
242 Ga0075364_10039125
243 Ga0070712_100129200
244 Ga0070712_100167349
245 Ga0075367_10002384
246 Ga0097621_100050537
247 Ga0075370_10039874
248 Ga0075428_100178698
249 Ga0068865_100029805
250 Ga0097620_100265892
251 Ga0075435_100148157
252 Ga0105240_10042860
253 Ga0111539_10075403
254 Ga0105245_10096092
255 Ga0105242_10038969
256 Ga0105237_10014477
257 Ga0105237_10365277
258 Ga0105238_10226620
259 Ga0105249_10045524
260 Ga0105249_10558304
261 Ga0105249_10650322
262 Ga0157373_10250969
263 Ga0157369_10018427
264 Ga0157378_10127759
265 Ga0157372_10582044
266 Ga0163163_10220717
267 Ga0163163_10319937
268 Ga0157380_10058573
269 Ga0182008_10001349
270 Ga0157377_10109428
271 Ga0157376_10110688
272 Ga0206354_10678195
273 Ga0206353_11609671
274 Ga0207692_10075963
275 Ga0207671_10054653
276 Ga0207693_10100222
277 Ga0207663_10019768
278 Ga0207652_10193139
279 Ga0207681_10042585
280 Ga0207700_10388736
281 Ga0207664_10090199
282 Ga0207664_10271739
283 Ga0207706_10048332
284 Ga0207704_10033326
285 Ga0207665_10099736
286 Ga0207661_10265107
287 Ga0207661_10439021
288 Ga0207679_10066490
289 Ga0207667_10277636
290 Ga0207712_10023582
291 Ga0207640_10023976
292 Ga0207677_10056804
293 Ga0207639_10652824
294 Ga0207708_10038321
295 Ga0207708_10068653
296 Ga0207708_10218416
297 Ga0207702_10153187
298 Ga0207641_10029919
299 Ga0207674_10291712
300 Ga0207675_100038260
301 Ga0207675_100042500
302 Ga0207675_100551269
303 Ga0207683_10099600
304 Ga0207683_10252878
305 Ga0207698_10130847
306 Ga0207698_10683434
307 Ga0307410_10004452
308 Ga0307407_10276905
309 Ga0307411_10109885
310 Ga0307507_10012902
311 Ga0373949_0001622
312 Ga0373955_0151120
313 Ga0373935_0087191
314 Ga0373937_0052950
315 Ga0373925_0269917
316 Ga0395899_0024045
317 Ga0395899_0060644
318 Ga0395900_0078116
319 Ga0395900_0165835
320 Ga0395898_0027293
321 Ga0395898_0030859
322 Ga0395905_0054925
323 Ga0395905_0133816
324 Ga0395905_0148038
325 Ga0395905_0220446
326 Ga0395905_0465725
327 Ga0395901_0009979
328 Ga0395901_0022227
329 Ga0395901_0025217
330 Ga0395901_0038819
331 Ga0395901_0269518
332 Ga0395901_0506577
333 Ga0436365_0757905
334 Ga0466969_0000332
335 Ga0466972_0069221
336 Ga0466972_0150589
337 Ga0466965_0042213
338 Ga0466966_0136953
339 Ga0466966_0292759
340 Ga0466961_0003317
341 Ga0466961_0009243
342 Ga0466961_0160659
343 Ga0466961_0351439
344 Ga0466963_0001638
345 Ga0466963_0011284
346 Ga0466963_0014281
347 Ga0466963_0023024
348 Ga0466963_0092997
349 Ga0466963_0283943
350 Ga0466964_0010907
351 Ga0466964_0038433
352 Ga0466964_0061637
353 Ga0466968_0009754
354 Ga0466970_0016386
355 Ga0466970_0233726
356 Ga0466957_0028571
357 Ga0466957_0063121
358 Ga0466957_0253219
359 Ga0466957_0275092
360 Ga0466960_0011082
361 Ga0466960_0101082
362 Ga0466959_0001014
363 Ga0466959_0028549
364 Ga0466958_0031047
365 Ga0466958_0041076
366 Ga0466958_0046116
367 Ga0466958_0057363
368 Ga0466958_0167027
369 Ga0466967_0004841
370 Ga0466967_0007433
371 Ga0466967_0012870
372 Ga0466967_0019562
373 Ga0466967_0027921
374 Ga0466967_0037731
375 Ga0466967_0071764
376 Ga0466967_0137848
377 Ga0466967_0138152
378 Ga0466967_0169668
379 Ga0466967_0186063
380 Ga0466967_0198913
381 Ga0466967_0212008
382 Ga0466967_0255375
383 Ga0466967_0269739
384 Ga0496102_0038192
385 Ga0496102_0085274
386 Ga0496102_0087811
387 Ga0496103_0062342
388 Ga0496104_0207111
389 Ga0496108_0202731
390 Ga0496109_0301083
391 Ga0496111_0195300
392 Ga0496112_0025711
393 Ga0496114_0349132
394 Ga0496114_0411299
395 Ga0501048_0125067
396 Ga0501069_0031150
397 Ga0501070_0409329
398 nmdc:mga00v17_32554_c1
399 nmdc:mga06z11_7941_c1
400 nmdc:mga05p37_464215_c1
401 nmdc:mga08y16_103589_c1
402 nmdc:mga0rr50_324682_c1
403 nmdc:mga0rr50_639722_c1
404 2552109512
405 2644015005
406 2644176909
407 2753039680
408 2753328189
409 2816504822
410 8008486828
411 8025526085
412 8056211827

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08281

Sigma70_r4_2

Sigma-70, region 4

148

201

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

49

115

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9189 108 165
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9072 108 160
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9066 106 164
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9 108 158
1rio-assembly1.cif.gz_H structure of bacteriophage lambda ci-ntd in complex with sigma-region4 of thermus aquaticus bound to dna 0.8964 108 159
ID Description Score Start End Superfamily
3vepH00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9145 110 165 1.10.10.10
3vepE00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9122 110 160 1.10.10.10
3vfzA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9067 109 160 1.10.10.10
1or7A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9044 106 158 1.10.10.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9 108 158 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2S9A826-F1-model_v4 Siderophore-interacting protein 0.8958 174 273 GO:0016987
AF-A0A0F0LH40-F1-model_v4 RNA polymerase sigma factor SigJ 0.8831 174 277 GO:0016987
AF-A0A2T7X5R5-F1-model_v4 Siderophore-interacting protein 0.8814 169 273 GO:0016987
AF-A0A4Y8Z582-F1-model_v4 Nuclear transport factor 2 family protein 0.8669 175 274 GO:0016987
AF-A0A2S9A826-F1-model_v4 Siderophore-interacting protein 0.8488 174 273 GO:0016987

Map