F315298

General Info

Members Datasets Scaffolds Average Seq Length
206 184 127 526

Family's Representative Sequence

Representative Sequence 3300031548|Ga0307408_100000049|Ga0307408_100000049103
Length 620
Sequence MRLLLLTLGLILSLELPAQAARDSGTNLRGAANTLLVAELEARVQALQAPAGDPASLPTVSPVAQAVSSFYQQRGFQPAWSDLNRLQELISALEGLHADGLDPEDYSISFLRQMHSLLKTGQRPIASELVEWELLATNAYLRALYHLFNGKVDPAGLDPQWNFELHELSPAVVAGLMSEGLESRRIEDVFAQTRPQHPVYTSLQAGLSRYRELAAQGGWFSLPAGPTLKPCMIDPQVALLRDRLRVTGEYQHPGDEEQVQAVAACLAANAKVAQTKSTSSAGASEANNYAALDPAITGELGAQLAESDSSEGSTQPNPFDEYLVAAVKQFQRDQYLEDDGAIGPATRAALNISAQARVDQIRVNLDRARWLLHNIPDELLLVDIAGFKITYFKGGKELWKSRVQVGMSYRTTPVFKSEVNYITLNPTWTVPPTILRKDILPKLRKDLSYLREHKIRVLDSNGQQLDPATIDWYRPGNVTLRQDAGDDAALGKAVIRFPNPYAVYLHDTPHQRLFNKSQRAFSSGCIRVERALELVELLLEETPNWDDAAINKTLATGKTRNVTLAKRVPIMLAYWTVDAVSDTKVAFKPDIYARDGAVLAALNRRVSQPVINLLEPAGDL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2511231156 Pseudomonas ogarae F113 Isolate Rhizosphere
3 2554235341 Pseudomonas protegens CHA0 Isolate Rhizosphere
4 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
5 2599185160 Pseudomonas sp. NFPP25 Isolate Rhizoplane
6 2599185161 Pseudomonas sp. NFPP09 Isolate Rhizoplane
7 2599185162 Pseudomonas sp. NFPP10 Isolate Rhizoplane
8 2599185163 Pseudomonas sp. NFPP12 Isolate Rhizoplane
9 2599185164 Pseudomonas sp. NFPP13 Isolate Rhizoplane
10 2599185165 Pseudomonas sp. NFPP18 Isolate Rhizoplane
11 2599185166 Pseudomonas sp. NFPP08 Isolate Rhizoplane
12 2599185168 Pseudomonas sp. NFPP05 Isolate Rhizoplane
13 2599185181 Pseudomonas sp. NFPP17 Isolate Rhizoplane
14 2599185182 Pseudomonas sp. NFPP19 Isolate Rhizoplane
15 2599185186 Pseudomonas sp. NFPP15 Isolate Rhizoplane
16 2599185188 Pseudomonas sp. NFACC45 Isolate Rhizoplane
17 2599185212 Pseudomonas sp. NFACC15-1 Isolate Rhizoplane
18 2599185248 Pseudomonas sp. NFACC08-1 Isolate Rhizoplane
19 2599185289 Pseudomonas sp. NFACC51 Isolate Rhizoplane
20 2599185291 Pseudomonas sp. NFACC48-1 Isolate Rhizoplane
21 2599185300 Pseudomonas sp. NFACC39-1 Isolate Rhizoplane
22 2599185302 Pseudomonas sp. NFACC43 Isolate Rhizoplane
23 2599185304 Pseudomonas sp. NFACC47-1 Isolate Rhizoplane
24 2599185305 Pseudomonas sp. NFACC07-1 Isolate Rhizoplane
25 2599185306 Pseudomonas sp. NFACC16-2 Isolate Rhizoplane
26 2599185308 Pseudomonas sp. NFACC17-2 Isolate Rhizoplane
27 2599185309 Pseudomonas sp. NFACC49-2 Isolate Rhizoplane
28 2599185310 Pseudomonas sp. NFACC09-4 Isolate Rhizoplane
29 2599185311 Pseudomonas sp. NFACC04-2 Isolate Rhizoplane
30 2599185312 Pseudomonas sp. NFACC32-1 Isolate Rhizoplane
31 2599185313 Pseudomonas sp. NFACC05-1 Isolate Rhizoplane
32 2599185314 Pseudomonas sp. NFACC23-1 Isolate Rhizoplane
33 2599185315 Pseudomonas sp. NFACC44-2 Isolate Rhizoplane
34 2599185316 Pseudomonas sp. NFACC52 Isolate Rhizoplane
35 2599185317 Pseudomonas sp. NFACC06-1 Isolate Rhizoplane
36 2599185318 Pseudomonas sp. NFACC13-1 Isolate Rhizoplane
37 2599185319 Pseudomonas sp. NFACC24-1 Isolate Rhizoplane
38 2599185320 Pseudomonas sp. NFACC36 Isolate Rhizoplane
39 2599185321 Pseudomonas sp. NFACC54 Isolate Rhizoplane
40 2599185322 Pseudomonas sp. NFACC14 Isolate Rhizoplane
41 2599185323 Pseudomonas sp. NFACC37-1 Isolate Rhizoplane
42 2599185324 Pseudomonas sp. NFACC46-3 Isolate Rhizoplane
43 2599185325 Pseudomonas sp. NFACC56-3 Isolate Rhizoplane
44 2599185356 Pseudomonas sp. NFPP14 Isolate Rhizoplane
45 2600254930 Pseudomonas sp. NFIX10 Isolate Rhizoplane
46 2600255313 Pseudomonas sp. NFPP16 Isolate Rhizoplane
47 2643221650 Pseudomonas sp. Root401 Isolate Unclassified
48 2651869719 Genome Sequence of Pseudomonas fluorescens UM270 Isolate Rhizosphere
49 2667528170 Pseudomonas sp. NFACC50-1 Isolate Rhizoplane
50 2667528171 Pseudomonas sp. NFPP22 Isolate Rhizoplane
51 2675903515 Pseudomonas thivervalensis DSM 13194 Isolate Unclassified
52 2738541276 Cellvibrio sp. YR554 Isolate Unclassified
53 2744054620 Pseudomonas thivervalensis LMG 21626 Isolate Unclassified
54 2791355520 Pseudomonas sp. s211(2017) Isolate Unclassified
55 2808606361 Pseudomonas sp. SJZ075 Isolate Rhizosphere
56 2808606376 Pseudomonas sp. SJZ074 Isolate Rhizosphere
57 2808606378 Pseudomonas sp. SJZ078 Isolate Rhizosphere
58 2808606380 Pseudomonas sp. SJZ085 Isolate Rhizosphere
59 2808606383 Pseudomonas sp. SJZ124 Isolate Rhizosphere
60 2808606389 Pseudomonas sp. SJZ101 Isolate Rhizosphere
61 2818991464 Pseudomonas protegens 3295 Isolate Rhizosphere
62 2825651385 Pseudomonas brassicacearum L13-6-12 Isolate Rhizosphere
63 2842854478 Pseudomonas sp. R-71998 Isolate Unclassified
64 2844665904 Pseudomonas protegens H1F10C Isolate Unclassified
65 2913036834 Pseudomonas viciae 11K1 Isolate Rhizosphere
66 2917070673 Pseudomonas protegens CHA0 Isolate Rhizosphere
67 2919481497 Pseudomonas brassicacearum 3432 Isolate Unclassified
68 2923586266 Pseudomonas fluorescens 1550 Isolate Rhizosphere
69 2929144301 Pseudomonas sp. R-71838 Hybrid assembly Isolate Unclassified
70 2931369376 Pseudomonas fluorescens DR133 Isolate Rhizosphere
71 2935353572 Pseudomonas protegens TECH19 Isolate Unclassified
72 2988728565 Pseudomonas corrugata RM1-1-4 Isolate Rhizosphere
73 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
74 3007419365 Pseudomonas vanderleydeniana RW8P3 Isolate Unclassified
75 3007866637 Pseudomonas marvdashtae SWRI102 Isolate Rhizosphere
76 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
77 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
78 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
79 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
80 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
81 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
82 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
83 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
84 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
85 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
86 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
87 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
88 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
89 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
90 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
91 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
92 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
93 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
94 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
95 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
96 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
97 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
98 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
99 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
100 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
101 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
102 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
103 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
104 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
105 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
106 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
107 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
108 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
109 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
110 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
111 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
112 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
113 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
114 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
115 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
116 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
117 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
118 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
119 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
120 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
121 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
122 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
123 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
124 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
125 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
126 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
127 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
128 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
129 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
130 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
131 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
132 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
133 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
134 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
135 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
136 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
137 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
138 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
139 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
140 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
141 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
142 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
143 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
144 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
145 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
146 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
147 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
148 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
149 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
150 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
151 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
152 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
153 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
154 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
155 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
156 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
157 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
158 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
159 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
160 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
161 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
162 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
163 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
164 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
165 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
166 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
167 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
168 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
169 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
170 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
171 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
172 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
173 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
174 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
175 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
176 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
177 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
178 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
179 637000220 Pseudomonas protegens Pf-5 Isolate Rhizoplane
180 640427133 Stutzerimonas stutzeri A1501 Isolate Rhizosphere
181 651053060 Stutzerimonas stutzeri CMT.A.9 Isolate Rhizosphere
182 8019769354 Pseudomonas sp. MSSRFD41 Isolate Rhizosphere
183 8056143049 Pseudomonas alvandae SWRI17 Isolate Rhizosphere
184 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 61.17
Metatranscriptomes 0
Isolates 38.83

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.8
Nodule 0.97
Rhizoplane 23.3
Rhizosphere 59.71
Stem 0
Stem Tuber 0
Unclassified 9.22

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2478244 2162886007 Bacteria 9211
2 JGI25162J39368_1000014 3300002737 Bacteria 328873
3 JGI25163J39215_1000041 3300002771 Bacteria 58320
4 JGI25164J39214_1000015 3300002772 Bacteria 217395
5 JGI25165J46597_1000027 3300003214 Bacteria 328873
6 rootH1_10000877 3300003316 Bacteria 19081
7 rootH1_10000877 3300003323 Bacteria 40245
8 Ga0055535_1008187 3300003761 Bacteria 1910
9 Ga0055536_1000021 3300003781 Bacteria 198584
10 Ga0055530_10000011 3300003791 Bacteria 170218
11 Ga0055540_1000034 3300003792 Bacteria 170218
12 Ga0065704_10070723 3300005289 Bacteria 17063
13 Ga0070690_100039490 3300005330 Bacteria 2982
14 Ga0070666_10026843 3300005335 Bacteria 3766
15 Ga0068868_100057044 3300005338 Unclassified 3085
16 Ga0070671_100016617 3300005355 Bacteria 5948
17 Ga0068859_100014903 3300005617 Bacteria 7806
18 Ga0068864_100054959 3300005618 Unclassified 3436
19 Ga0068863_100009560 3300005841 Bacteria 9455
20 Ga0068858_100062748 3300005842 Unclassified 3436
21 Ga0068860_100092832 3300005843 Bacteria 2876
22 Ga0081455_10012280 3300005937 Bacteria 8547
23 Ga0081538_10001791 3300005981 Bacteria 21683
24 Ga0081538_10002847 3300005981 Bacteria 16541
25 Ga0081538_10003976 3300005981 Bacteria 13767
26 Ga0081538_10007554 3300005981 Bacteria 9387
27 Ga0097621_100098147 3300006237 Unclassified 2460
28 Ga0068871_100034173 3300006358 Bacteria 4033
29 Ga0075428_100012558 3300006844 Bacteria 9416
30 Ga0075428_100028175 3300006844 Bacteria 6213
31 Ga0075428_100293721 3300006844 Unclassified 1748
32 Ga0075430_100026570 3300006846 Bacteria 4923
33 Ga0075431_100004174 3300006847 Bacteria 14130
34 Ga0075431_100112016 3300006847 Unclassified 2816
35 Ga0097620_100014903 3300006931 Bacteria 7806
36 Ga0079104_1000342 3300006946 Bacteria 56194
37 Ga0105251_10005063 3300009011 Bacteria 8735
38 Ga0105244_10000976 3300009036 Bacteria 24019
39 Ga0111539_10037234 3300009094 Bacteria 5877
40 Ga0105245_10034653 3300009098 Bacteria 4478
41 Ga0105243_10000340 3300009148 Bacteria 51021
42 Ga0105242_10046199 3300009176 Bacteria 3532
43 Ga0105248_10048367 3300009177 Bacteria 4771
44 Ga0157373_10043819 3300013100 Bacteria 3195
45 Ga0157371_10000199 3300013102 Bacteria 87958
46 Ga0157374_10216755 3300013296 Unclassified 1877
47 Ga0163162_10043683 3300013306 Bacteria 4487
48 Ga0163163_10223728 3300014325 Unclassified 1931
49 Ga0182008_10000534 3300014497 Bacteria 28382
50 Ga0209760_100012 3300025207 Bacteria 185483
51 Ga0207427_100003 3300025231 Bacteria 1035004
52 Ga0209437_100002 3300025233 Bacteria 1574801
53 Ga0209233_1000004 3300025261 Bacteria 1574798
54 Ga0209050_1000013 3300025298 Bacteria 811408
55 Ga0209051_1000007 3300025303 Bacteria 811408
56 Ga0207655_1000022 3300025728 Bacteria 483933
57 Ga0207680_10023140 3300025903 Bacteria 3389
58 Ga0207709_10001076 3300025935 Bacteria 20096
59 Ga0207711_10021996 3300025941 Bacteria 5328
60 Ga0207658_10028758 3300025986 Bacteria 3918
61 Ga0207703_10025337 3300026035 Bacteria 4666
62 Ga0207641_10010307 3300026088 Bacteria 7682
63 Ga0207676_10007318 3300026095 Bacteria 7827
64 Ga0207676_10072602 3300026095 Bacteria 2767
65 Ga0209281_1000009 3300027111 Bacteria 771717
66 Ga0209983_1002448 3300027665 Bacteria 4064
67 Ga0209971_1001218 3300027682 Bacteria 6476
68 Ga0314311_1067047 3300030733 Bacteria 3039
69 Ga0316183_1072723 3300030742 Bacteria 7274
70 Ga0265328_10007003 3300031239 Bacteria 4731
71 Ga0265316_10050539 3300031344 Bacteria 3269
72 Ga0307408_100000049 3300031548 Bacteria 160142
73 Ga0307408_100000085 3300031548 Bacteria 104335
74 Ga0307408_100000673 3300031548 Bacteria 28404
75 Ga0307408_100008043 3300031548 Bacteria 6971
76 Ga0307408_100093909 3300031548 Bacteria 2270
77 Ga0316576_10013203 3300031727 Bacteria 5480
78 Ga0316576_10021692 3300031727 Bacteria 4447
79 Ga0316578_10008260 3300031728 Bacteria 5286
80 Ga0316578_10009665 3300031728 Bacteria 4966
81 Ga0307405_10012962 3300031731 Bacteria 4434
82 Ga0316577_10002156 3300031733 Bacteria 9640
83 Ga0307406_10000524 3300031901 Bacteria 22050
84 Ga0307412_10001446 3300031911 Bacteria 13218
85 Ga0307412_10003561 3300031911 Bacteria 8645
86 Ga0307416_100163457 3300032002 Bacteria 2061
87 Ga0307414_10009122 3300032004 Bacteria 5681
88 Ga0307414_10014954 3300032004 Bacteria 4672
89 Ga0307414_10083062 3300032004 Bacteria 2351
90 Ga0316585_10001897 3300032137 Bacteria 5580
91 Ga0316580_10003792 3300032139 Bacteria 4327
92 Ga0316574_0003492 3300035398 Bacteria 8111
93 Ga0373933_0036776 3300035724 Bacteria 2868
94 Ga0439438_000033 3300041405 Bacteria 69839
95 Ga0439438_000254 3300041405 Bacteria 23798
96 Ga0439438_000483 3300041405 Bacteria 18018
97 Ga0439447_008998 3300041407 Bacteria 3056
98 Ga0439447_011216 3300041407 Bacteria 2626
99 Ga0439466_0008057 3300041411 Bacteria 3972
100 Ga0439431_0000129 3300041997 Bacteria 13347
101 Ga0439445_0007763 3300042004 Bacteria 2498
102 Ga0439432_000524 3300042006 Bacteria 14285
103 Ga0439432_007405 3300042006 Bacteria 3890
104 Ga0439452_003127 3300042010 Bacteria 5867
105 Ga0439452_005332 3300042010 Bacteria 4147
106 Ga0450910_004053 3300042147 Bacteria 1968
107 Ga0439446_0005644 3300042156 Bacteria 3223
108 Ga0451577_0001853 3300042876 Bacteria 26943
109 Ga0439440_0005335 3300042993 Bacteria 2551
110 Ga0453684_0004998 3300044712 Bacteria 26950
111 Ga0495648_0000074 3300046524 Bacteria 129886
112 Ga0495681_0001404 3300047470 Bacteria 18128
113 Ga0496112_0004238 3300048915 Bacteria 12105
114 Ga0496112_0157234 3300048915 Unclassified 2240
115 Ga0496114_0001475 3300048917 Bacteria 17859
116 Ga0496116_0000046 3300048919 Bacteria 323643
117 Ga0496117_0000322 3300048920 Bacteria 84055
118 Ga0496121_0000093 3300048924 Bacteria 212965
119 Ga0496122_0004232 3300048925 Bacteria 18005
120 Ga0496123_0002048 3300048926 Bacteria 26007
121 Ga0501040_0076865 3300049576 Bacteria 2309
122 Ga0501048_0045974 3300049582 Bacteria 3117
123 Ga0501072_0103228 3300049588 Bacteria 2266
124 Ga0501075_0038675 3300049591 Bacteria 3567
125 nmdc:mga0qj67_21213_c1 3300050509 Bacteria 4982
126 nmdc:mga06r32_34188_c1 3300050510 Bacteria 4793
127 nmdc:mga08y16_71208_c1 3300050511 Bacteria 3623

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300041407 Ga0439447_008998 Ga0439447_008998_32_1369 445
2 3300032002 Ga0307416_100163457 Ga0307416_1001634572 446
3 iso_pu_bacteria 2599185302 2599943344 462
4 iso_pu_bacteria 2599185304 2599954455 462
5 iso_pu_bacteria 2599185309 2599983768 462
6 iso_pu_bacteria 2599185310 2599988726 462
7 iso_pu_bacteria 2599185312 2600001370 462
8 iso_pu_bacteria 2599185320 2600048573 462
9 3300042876 Ga0451577_0001853 Ga0451577_0001853_24632_26176 463
10 3300044712 Ga0453684_0004998 Ga0453684_0004998_763_2307 463
11 3300006844 Ga0075428_100012558 Ga0075428_1000125582 469
12 3300048915 Ga0496112_0157234 Ga0496112_0157234_743_2224 469
13 iso_pu_bacteria 640427133 640486224 478
14 3300042993 Ga0439440_0005335 Ga0439440_0005335_516_1964 482
15 3300049582 Ga0501048_0045974 Ga0501048_0045974_199_1941 484
16 3300049588 Ga0501072_0103228 Ga0501072_0103228_22_1794 484
17 3300049591 Ga0501075_0038675 Ga0501075_0038675_233_1975 484
18 3300050510 nmdc:mga06r32_34188_c1 nmdc:mga06r32_34188_c1_2988_4568 486
19 3300031727 Ga0316576_10013203 Ga0316576_100132033 487
20 3300031728 Ga0316578_10009665 Ga0316578_100096652 487
21 3300031733 Ga0316577_10002156 Ga0316577_100021567 487
22 3300032137 Ga0316585_10001897 Ga0316585_100018972 487
23 3300032139 Ga0316580_10003792 Ga0316580_100037922 487
24 3300006844 Ga0075428_100028175 Ga0075428_1000281754 488
25 3300006847 Ga0075431_100004174 Ga0075431_1000041747 488
26 3300006846 Ga0075430_100026570 Ga0075430_1000265703 489
27 3300006844 Ga0075428_100293721 Ga0075428_1002937211 490
28 3300047470 Ga0495681_0001404 Ga0495681_0001404_3841_5316 491
29 3300031239 Ga0265328_10007003 Ga0265328_100070032 493
30 3300031344 Ga0265316_10050539 Ga0265316_100505392 493
31 3300049576 Ga0501040_0076865 Ga0501040_0076865_689_2284 494
32 3300013306 Ga0163162_10043683 Ga0163162_100436832 495
33 iso_pu_bacteria 2574179768 2574430656 497
34 3300009176 Ga0105242_10046199 Ga0105242_100461992 499
35 3300048915 Ga0496112_0004238 Ga0496112_0004238_2589_4307 501
36 3300014325 Ga0163163_10223728 Ga0163163_102237281 502
37 3300048917 Ga0496114_0001475 Ga0496114_0001475_13669_15390 502
38 3300041405 Ga0439438_000033 Ga0439438_000033_3810_5321 503
39 3300042004 Ga0439445_0007763 Ga0439445_0007763_103_1614 503
40 3300042010 Ga0439452_005332 Ga0439452_005332_1368_2879 503
41 3300042147 Ga0450910_004053 Ga0450910_004053_132_1643 503
42 iso_pu_bacteria 2844665904 2844669908 503
43 3300003323 rootH1_10000877 rootH1_1000087721 504
44 3300013296 Ga0157374_10216755 Ga0157374_102167552 504
45 iso_pu_bacteria 2511231156 2511824807 504
46 iso_pu_bacteria 2842854478 2842858054 504
47 iso_pu_bacteria 651053060 651174186 504
48 3300005618 Ga0068864_100054959 Ga0068864_1000549594 505
49 3300005842 Ga0068858_100062748 Ga0068858_1000627484 505
50 3300006237 Ga0097621_100098147 Ga0097621_1000981472 505
51 3300005330 Ga0070690_100039490 Ga0070690_1000394902 507
52 3300005335 Ga0070666_10026843 Ga0070666_100268431 507
53 3300005338 Ga0068868_100057044 Ga0068868_1000570442 507
54 3300005355 Ga0070671_100016617 Ga0070671_1000166173 507
55 3300005617 Ga0068859_100014903 Ga0068859_1000149035 507
56 3300005841 Ga0068863_100009560 Ga0068863_1000095609 507
57 3300005843 Ga0068860_100092832 Ga0068860_1000928322 507
58 3300006358 Ga0068871_100034173 Ga0068871_1000341732 507
59 3300006931 Ga0097620_100014903 Ga0097620_1000149035 507
60 3300009098 Ga0105245_10034653 Ga0105245_100346534 507
61 3300009177 Ga0105248_10048367 Ga0105248_100483674 507
62 3300025903 Ga0207680_10023140 Ga0207680_100231401 507
63 3300025941 Ga0207711_10021996 Ga0207711_100219964 507
64 3300025986 Ga0207658_10028758 Ga0207658_100287582 507
65 3300026035 Ga0207703_10025337 Ga0207703_100253374 507
66 3300026088 Ga0207641_10010307 Ga0207641_100103075 507
67 3300026095 Ga0207676_10007318 Ga0207676_100073187 507
68 3300026095 Ga0207676_10072602 Ga0207676_100726022 507
69 3300030733 Ga0314311_1067047 Ga0314311_10670472 508
70 3300032004 Ga0307414_10014954 Ga0307414_100149543 508
71 3300031727 Ga0316576_10021692 Ga0316576_100216923 509
72 3300035398 Ga0316574_0003492 Ga0316574_0003492_5392_7089 509
73 iso_pu_bacteria 2990196909 2990197156 509
74 3300031728 Ga0316578_10008260 Ga0316578_100082602 510
75 3300009148 Ga0105243_10000340 Ga0105243_1000034036 511
76 3300013102 Ga0157371_10000199 Ga0157371_1000019923 511
77 3300005981 Ga0081538_10001791 Ga0081538_1000179118 512
78 3300009011 Ga0105251_10005063 Ga0105251_100050632 512
79 3300009036 Ga0105244_10000976 Ga0105244_1000097617 512
80 3300009094 Ga0111539_10037234 Ga0111539_100372347 512
81 3300013100 Ga0157373_10043819 Ga0157373_100438192 512
82 3300014497 Ga0182008_10000534 Ga0182008_1000053431 512
83 3300048924 Ga0496121_0000093 Ga0496121_0000093_84892_86439 512
84 3300050509 nmdc:mga0qj67_21213_c1 nmdc:mga0qj67_21213_c1_2088_3824 512
85 3300050511 nmdc:mga08y16_71208_c1 nmdc:mga08y16_71208_c1_1649_3385 512
86 3300005937 Ga0081455_10012280 Ga0081455_100122805 514
87 3300005981 Ga0081538_10002847 Ga0081538_100028472 514
88 3300005981 Ga0081538_10003976 Ga0081538_100039765 514
89 3300005981 Ga0081538_10007554 Ga0081538_100075548 514
90 3300006847 Ga0075431_100112016 Ga0075431_1001120162 514
91 3300027665 Ga0209983_1002448 Ga0209983_10024481 514
92 3300027682 Ga0209971_1001218 Ga0209971_10012183 514
93 3300031548 Ga0307408_100000049 Ga0307408_100000049103 514
94 3300031901 Ga0307406_10000524 Ga0307406_1000052414 514
95 3300035724 Ga0373933_0036776 Ga0373933_0036776_400_2088 514
96 iso_pu_bacteria 8019769354 8019773513 514
97 3300032004 Ga0307414_10009122 Ga0307414_100091226 515
98 iso_pu_bacteria 2599185161 2599363991 515
99 iso_pu_bacteria 2599185162 2599370311 515
100 iso_pu_bacteria 2599185163 2599372618 515
101 iso_pu_bacteria 2599185166 2599391477 515
102 iso_pu_bacteria 2599185168 2599407723 515
103 iso_pu_bacteria 2599185182 2599470825 515
104 iso_pu_bacteria 2667528171 2671094834 515
105 iso_pu_bacteria 2738541276 2738713419 515
106 3300031548 Ga0307408_100000673 Ga0307408_1000006737 516
107 iso_pu_bacteria 2554235341 2555669415 516
108 iso_pu_bacteria 2599185160 2599353581 516
109 iso_pu_bacteria 2599185164 2599378689 516
110 iso_pu_bacteria 2599185165 2599383934 516
111 iso_pu_bacteria 2599185181 2599460415 516
112 iso_pu_bacteria 2599185186 2599489436 516
113 iso_pu_bacteria 2599185188 2599500586 516
114 iso_pu_bacteria 2599185212 2599612400 516
115 iso_pu_bacteria 2599185248 2599771935 516
116 iso_pu_bacteria 2599185289 2599885178 516
117 iso_pu_bacteria 2599185291 2599898845 516
118 iso_pu_bacteria 2599185300 2599932269 516
119 iso_pu_bacteria 2599185305 2599959831 516
120 iso_pu_bacteria 2599185306 2599967441 516
121 iso_pu_bacteria 2599185308 2599976992 516
122 iso_pu_bacteria 2599185311 2599993621 516
123 iso_pu_bacteria 2599185313 2600006267 516
124 iso_pu_bacteria 2599185314 2600011280 516
125 iso_pu_bacteria 2599185315 2600016339 516
126 iso_pu_bacteria 2599185316 2600024591 516
127 iso_pu_bacteria 2599185317 2600032379 516
128 iso_pu_bacteria 2599185318 2600035012 516
129 iso_pu_bacteria 2599185319 2600040655 516
130 iso_pu_bacteria 2599185321 2600051545 516
131 iso_pu_bacteria 2599185322 2600059267 516
132 iso_pu_bacteria 2599185323 2600062992 516
133 iso_pu_bacteria 2599185324 2600072615 516
134 iso_pu_bacteria 2599185325 2600079286 516
135 iso_pu_bacteria 2599185356 2600213024 516
136 iso_pu_bacteria 2600254930 2600361941 516
137 iso_pu_bacteria 2600255313 2601773192 516
138 iso_pu_bacteria 2643221650 2644284361 516
139 iso_pu_bacteria 2651869719 2652543627 516
140 iso_pu_bacteria 2667528170 2671091725 516
141 iso_pu_bacteria 2675903515 2678261936 516
142 iso_pu_bacteria 2744054620 2745008284 516
143 iso_pu_bacteria 2791355520 2794597339 516
144 iso_pu_bacteria 2808606361 2808857895 516
145 iso_pu_bacteria 2808606376 2808922486 516
146 iso_pu_bacteria 2808606378 2808938158 516
147 iso_pu_bacteria 2808606380 2808948515 516
148 iso_pu_bacteria 2808606383 2808966410 516
149 iso_pu_bacteria 2808606389 2808996833 516
150 iso_pu_bacteria 2818991464 2819705805 516
151 iso_pu_bacteria 2825651385 2825651657 516
152 iso_pu_bacteria 2913036834 2913039709 516
153 iso_pu_bacteria 2917070673 2917073229 516
154 iso_pu_bacteria 2919481497 2919484811 516
155 iso_pu_bacteria 2923586266 2923588553 516
156 iso_pu_bacteria 2929144301 2929147655 516
157 iso_pu_bacteria 2931369376 2931375237 516
158 iso_pu_bacteria 2935353572 2935357775 516
159 iso_pu_bacteria 2988728565 2988728885 516
160 iso_pu_bacteria 3007419365 3007421960 516
161 iso_pu_bacteria 3007866637 3007869182 516
162 iso_pu_bacteria 637000220 637319751 516
163 iso_pu_bacteria 8056143049 8056146300 516
164 iso_pu_bacteria 8057798959 8057799843 516
165 3300041411 Ga0439466_0008057 Ga0439466_0008057_1463_3049 517
166 3300042156 Ga0439446_0005644 Ga0439446_0005644_186_1772 517
167 3300002737 JGI25162J39368_1000014 JGI25162J39368_100001481 519
168 3300002771 JGI25163J39215_1000041 JGI25163J39215_100004113 519
169 3300002772 JGI25164J39214_1000015 JGI25164J39214_1000015131 519
170 3300003214 JGI25165J46597_1000027 JGI25165J46597_1000027237 519
171 3300025207 Ga0209760_100012 Ga0209760_100012100 519
172 3300025231 Ga0207427_100003 Ga0207427_100003716 519
173 3300025233 Ga0209437_100002 Ga0209437_100002297 519
174 3300025261 Ga0209233_1000004 Ga0209233_10000041128 519
175 3300025935 Ga0207709_10001076 Ga0207709_100010767 519
176 2162886007 SwRhRL2b_contig_2478244 SwRhRL2b_0116.00008530 520
177 3300003761 Ga0055535_1008187 Ga0055535_10081872 520
178 3300003781 Ga0055536_1000021 Ga0055536_1000021145 520
179 3300003791 Ga0055530_10000011 Ga0055530_1000001155 520
180 3300003792 Ga0055540_1000034 Ga0055540_100003455 520
181 3300005289 Ga0065704_10070723 Ga0065704_1007072311 520
182 3300006946 Ga0079104_1000342 Ga0079104_100034212 520
183 3300025298 Ga0209050_1000013 Ga0209050_1000013336 520
184 3300025303 Ga0209051_1000007 Ga0209051_1000007336 520
185 3300025728 Ga0207655_1000022 Ga0207655_100002244 520
186 3300027111 Ga0209281_1000009 Ga0209281_100000990 520
187 3300030742 Ga0316183_1072723 Ga0316183_10727231 520
188 3300031548 Ga0307408_100000085 Ga0307408_10000008518 520
189 3300031548 Ga0307408_100008043 Ga0307408_1000080435 520
190 3300031548 Ga0307408_100093909 Ga0307408_1000939092 520
191 3300031731 Ga0307405_10012962 Ga0307405_100129624 520
192 3300031911 Ga0307412_10001446 Ga0307412_100014468 520
193 3300031911 Ga0307412_10003561 Ga0307412_100035618 520
194 3300032004 Ga0307414_10083062 Ga0307414_100830622 520
195 3300041405 Ga0439438_000254 Ga0439438_000254_6280_7842 520
196 3300041405 Ga0439438_000483 Ga0439438_000483_6283_7845 520
197 3300041407 Ga0439447_011216 Ga0439447_011216_752_2314 520
198 3300041997 Ga0439431_0000129 Ga0439431_0000129_2315_3877 520
199 3300042006 Ga0439432_000524 Ga0439432_000524_3581_5143 520
200 3300042006 Ga0439432_007405 Ga0439432_007405_1834_3396 520
201 3300042010 Ga0439452_003127 Ga0439452_003127_1532_3094 520
202 3300046524 Ga0495648_0000074 Ga0495648_0000074_94771_96342 520
203 3300048919 Ga0496116_0000046 Ga0496116_0000046_127699_129270 520
204 3300048920 Ga0496117_0000322 Ga0496117_0000322_65740_67311 520
205 3300048925 Ga0496122_0004232 Ga0496122_0004232_8113_9684 520
206 3300048926 Ga0496123_0002048 Ga0496123_0002048_7942_9513 520

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03734

YkuD

L,D-transpeptidase catalytic domain

377

545

0.94

PF20142

Scaffold

Scaffold domain

65

207

0.89

PF01471

PG_binding_1

Putative peptidoglycan binding domain

294

350

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
5tv7-assembly2.cif.gz_B 2.05 angstrom resolution crystal structure of peptidoglycan-binding protein from clostridioides difficile in complex with glutamine hydroxamate. 0.8996 201 268
6tci-assembly1.cif.gz_A the crystal structure of sleb n-terminal domain 0.8948 199 267
7rum-assembly2.cif.gz_B endolysin from escherichia coli o157:h7 phage ftebc1, lyst84 0.84 201 267
6tci-assembly1.cif.gz_A the crystal structure of sleb n-terminal domain 0.8055 199 267
3h1q-assembly2.cif.gz_B crystal structure of ethanolamine utilization protein eutj from carboxydothermus hydrogenoformans 0.7607 293 317
ID Description Score Start End Superfamily
af_Q94LQ4_46_318_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.9138 204 266 3.40.390.10
af_K7K641_72_302_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.8973 206 265 3.40.390.10
af_L7N653_5_90_1.10.101.10 Mainly Alpha;Orthogonal Bundle;Muramoyl-pentapeptide Carboxypeptidase; domain 1;PGBD-like superfamily/PGBD 0.8758 200 267 1.10.101.10
af_I1KXL7_50_332_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.8753 204 267 3.40.390.10
af_I1J5F1_56_315_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.8711 203 266 3.40.390.10
ID Description Score Start End GO Terms
AF-A0A1T2XXM9-F1-model_v4 Murein L,D-transpeptidase 0.9232 21 469 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A847ZVJ0-F1-model_v4 L,D-transpeptidase family protein 0.9189 310 511 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A239JHM4-F1-model_v4 Murein L,D-transpeptidase YcbB/YkuD 0.9159 30 516 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A531M5D4-F1-model_v4 Murein L,D-transpeptidase 0.9151 327 485 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A172WXB6-F1-model_v4 Peptidoglycan-binding protein 0.9135 31 515 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555

Feature Viewer

pLDDT pTM Quality
89.45 0.86 High
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Predicted Structure (AlphaFold2)

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