F314508

General Info

Members Datasets Scaffolds Average Seq Length
205 149 410 254

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2857542790|2857546219
Length 284
Sequence TASALSASSSRSAATQRPADSDAAAAPDASPASTAPTLDINCDMGESFGAFVMGNDLEVLAHVTSANIACGMHAGDPGVMHRTVAAAVERGVAVGAHPGLPDLQGFGRRVMALSPAEVYDLTVYQIGALWAFTRAAGTSLHHVKAHGALYNMTAKDPAIADAVARATRDVDPSLIIYVATSTMADAATALSLPVAYEVFADRTYQDDATLTPRSQADAMIEDPDLSIAQVKGMVVGGYVTSQTGKRVPVRADTLCIHGDQPGAALFARRIREALTHDGIRIATI

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
16 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
17 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
37 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
38 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
39 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
51 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
52 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
97 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
98 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
99 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
100 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
101 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
102 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
103 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
104 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
105 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
106 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
107 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
108 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
109 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
112 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
113 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
114 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
115 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
116 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
117 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
118 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
119 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
120 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
121 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
122 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
128 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
129 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
130 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
132 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
133 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
134 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
135 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
136 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
137 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
138 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
139 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
140 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
141 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
142 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
143 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
144 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
145 2855730933 Achromobacter sp. HZ28 Isolate Nodule
146 2855767633 Achromobacter sp. HZ34 Isolate Nodule
147 2895395659 Rhodanobacter sp. T12-5 Isolate Unclassified
148 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
149 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.07
Metatranscriptomes 0
Isolates 2.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.27
Nodule 0.98
Rhizoplane 0.98
Rhizosphere 81.95
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10079052 3300003316 Bacteria 3772
2 rootL2_10019286 3300003322 Bacteria 4143
3 Ga0070658_10017209 3300005327 Bacteria 5785
4 Ga0070670_100482898 3300005331 Bacteria 1100
5 Ga0070670_100586425 3300005331 Bacteria 997
6 Ga0068869_100290259 3300005334 Bacteria 1318
7 Ga0070666_10077960 3300005335 Bacteria 2261
8 Ga0070661_100040573 3300005344 Bacteria 3396
9 Ga0070661_100273976 3300005344 Bacteria 1307
10 Ga0070668_100008206 3300005347 Bacteria 7754
11 Ga0070673_100462859 3300005364 Bacteria 1142
12 Ga0070659_100233046 3300005366 Bacteria 1522
13 Ga0070667_100000084 3300005367 Bacteria 118027
14 Ga0070667_100035217 3300005367 Bacteria 4193
15 Ga0070667_100060560 3300005367 Bacteria 3203
16 Ga0070667_100156122 3300005367 Bacteria 2007
17 Ga0070667_100350976 3300005367 Bacteria 1335
18 Ga0070709_10537193 3300005434 Bacteria 893
19 Ga0070708_100512472 3300005445 Bacteria 1131
20 Ga0070663_100000689 3300005455 Bacteria 18179
21 Ga0070662_100138596 3300005457 Bacteria 1883
22 Ga0070706_100011570 3300005467 Bacteria 8197
23 Ga0070707_100269633 3300005468 Bacteria 1655
24 Ga0070679_100119194 3300005530 Bacteria 2624
25 Ga0068853_100008030 3300005539 Bacteria 8465
26 Ga0068853_100014548 3300005539 Bacteria 6449
27 Ga0068853_100021406 3300005539 Bacteria 5391
28 Ga0068853_100083718 3300005539 Bacteria 2795
29 Ga0068853_100543536 3300005539 Bacteria 1100
30 Ga0070665_100002001 3300005548 Bacteria 22931
31 Ga0070665_100041999 3300005548 Bacteria 4597
32 Ga0070665_100075874 3300005548 Bacteria 3369
33 Ga0068855_100003763 3300005563 Bacteria 18547
34 Ga0068855_100007123 3300005563 Bacteria 13565
35 Ga0068855_100194612 3300005563 Bacteria 2285
36 Ga0068855_100309248 3300005563 Bacteria 1749
37 Ga0070664_100328502 3300005564 Bacteria 1387
38 Ga0068857_100118962 3300005577 Bacteria 2378
39 Ga0068856_100012869 3300005614 Bacteria 8098
40 Ga0068852_100127503 3300005616 Bacteria 2339
41 Ga0068852_100145313 3300005616 Bacteria 2199
42 Ga0068859_100000125 3300005617 Bacteria 72938
43 Ga0068864_100038575 3300005618 Bacteria 4080
44 Ga0068864_100100364 3300005618 Bacteria 2565
45 Ga0068864_100127600 3300005618 Bacteria 2281
46 Ga0068851_10027756 3300005834 Bacteria 2791
47 Ga0068851_10060874 3300005834 Bacteria 1934
48 Ga0068863_100060817 3300005841 Bacteria 3572
49 Ga0068863_100159549 3300005841 Bacteria 2160
50 Ga0068863_100193999 3300005841 Bacteria 1952
51 Ga0068862_100001848 3300005844 Bacteria 19196
52 Ga0081455_10276612 3300005937 Bacteria 1215
53 Ga0075364_10023329 3300006051 Bacteria 3917
54 Ga0075364_10028830 3300006051 Bacteria 3556
55 Ga0070712_100735699 3300006175 Bacteria 843
56 Ga0075367_10005377 3300006178 Bacteria 6351
57 Ga0075366_10002449 3300006195 Bacteria 9501
58 Ga0075366_10033165 3300006195 Bacteria 3041
59 Ga0075370_10000789 3300006353 Bacteria 12656
60 Ga0075370_10021000 3300006353 Bacteria 3575
61 Ga0068871_100029940 3300006358 Bacteria 4281
62 Ga0097620_100000125 3300006931 Bacteria 72938
63 Ga0099794_10082944 3300007265 Bacteria 1583
64 Ga0105240_10014020 3300009093 Bacteria 10964
65 Ga0111539_10471982 3300009094 Bacteria 1461
66 Ga0105245_10283983 3300009098 Bacteria 1619
67 Ga0114129_10246071 3300009147 Bacteria 2402
68 Ga0105241_10008230 3300009174 Bacteria 7679
69 Ga0105242_10153611 3300009176 Bacteria 2009
70 Ga0105248_10000429 3300009177 Bacteria 47562
71 Ga0105237_10000388 3300009545 Bacteria 62620
72 Ga0105237_10003573 3300009545 Bacteria 18410
73 Ga0105238_10002402 3300009551 Bacteria 18777
74 Ga0105238_10123693 3300009551 Bacteria 2566
75 Ga0105238_10187787 3300009551 Bacteria 2043
76 Ga0105249_10000170 3300009553 Bacteria 76693
77 Ga0105249_10924217 3300009553 Bacteria 940
78 Ga0105239_10004116 3300010375 Bacteria 17479
79 Ga0105239_10015522 3300010375 Bacteria 8434
80 Ga0157371_10010476 3300013102 Bacteria 7217
81 Ga0157370_10077585 3300013104 Bacteria 3129
82 Ga0157369_10001162 3300013105 Bacteria 32848
83 Ga0157369_10872130 3300013105 Bacteria 924
84 Ga0157374_10154869 3300013296 Bacteria 2230
85 Ga0157374_10286645 3300013296 Bacteria 1627
86 Ga0157378_10000130 3300013297 Bacteria 72949
87 Ga0157372_10002301 3300013307 Bacteria 20714
88 Ga0157379_10670840 3300014968 Bacteria 972
89 Ga0209025_1000018 3300025294 Bacteria 686898
90 Ga0207656_10003440 3300025321 Bacteria 5441
91 Ga0207680_10008668 3300025903 Bacteria 5005
92 Ga0207645_10013038 3300025907 Bacteria 5616
93 Ga0207705_10068559 3300025909 Bacteria 2568
94 Ga0207684_10011585 3300025910 Bacteria 7706
95 Ga0207654_10009476 3300025911 Bacteria 4946
96 Ga0207695_10001009 3300025913 Bacteria 49724
97 Ga0207671_10012714 3300025914 Bacteria 6751
98 Ga0207657_10267707 3300025919 Bacteria 1359
99 Ga0207649_10002383 3300025920 Bacteria 10544
100 Ga0207681_10380083 3300025923 Bacteria 1137
101 Ga0207694_10035093 3300025924 Bacteria 3846
102 Ga0207650_10160157 3300025925 Bacteria 1783
103 Ga0207650_10291657 3300025925 Bacteria 1330
104 Ga0207644_10353852 3300025931 Bacteria 1193
105 Ga0207690_10200164 3300025932 Bacteria 1516
106 Ga0207706_10216755 3300025933 Bacteria 1677
107 Ga0207706_10299663 3300025933 Bacteria 1401
108 Ga0207704_10623492 3300025938 Bacteria 885
109 Ga0207691_10260203 3300025940 Bacteria 1496
110 Ga0207711_10001386 3300025941 Bacteria 22811
111 Ga0207679_10077718 3300025945 Bacteria 2526
112 Ga0207667_10004923 3300025949 Bacteria 16313
113 Ga0207667_10020459 3300025949 Bacteria 7359
114 Ga0207667_10493995 3300025949 Bacteria 1242
115 Ga0207712_10000264 3300025961 Bacteria 50896
116 Ga0207668_10118595 3300025972 Bacteria 1999
117 Ga0207668_10437787 3300025972 Bacteria 1113
118 Ga0207640_10015635 3300025981 Bacteria 4397
119 Ga0207658_10000214 3300025986 Bacteria 60680
120 Ga0207658_10015651 3300025986 Bacteria 5207
121 Ga0207658_10123517 3300025986 Bacteria 2068
122 Ga0207658_10126689 3300025986 Bacteria 2045
123 Ga0207658_10279698 3300025986 Bacteria 1430
124 Ga0207677_10624497 3300026023 Bacteria 948
125 Ga0207703_10033965 3300026035 Bacteria 4046
126 Ga0207639_10006224 3300026041 Bacteria 8105
127 Ga0207639_10020755 3300026041 Bacteria 4707
128 Ga0207639_10360224 3300026041 Bacteria 1301
129 Ga0207639_10513764 3300026041 Bacteria 1096
130 Ga0207639_10578427 3300026041 Bacteria 1034
131 Ga0207639_10651319 3300026041 Bacteria 974
132 Ga0207678_10000288 3300026067 Bacteria 45700
133 Ga0207678_10062755 3300026067 Bacteria 3193
134 Ga0207678_10082379 3300026067 Bacteria 2753
135 Ga0207678_10588136 3300026067 Bacteria 975
136 Ga0207702_10006943 3300026078 Bacteria 9697
137 Ga0207641_10700199 3300026088 Bacteria 997
138 Ga0207641_10736869 3300026088 Bacteria 972
139 Ga0207674_10071142 3300026116 Bacteria 3495
140 Ga0207683_10635279 3300026121 Bacteria 989
141 Ga0207698_10017207 3300026142 Bacteria 4898
142 Ga0268266_10194021 3300028379 Bacteria 1855
143 Ga0268266_10422575 3300028379 Bacteria 1263
144 Ga0268265_10000664 3300028380 Bacteria 34105
145 Ga0268264_10057923 3300028381 Bacteria 3242
146 Ga0307515_10202608 3300028794 Bacteria 1855
147 Ga0307514_10256705 3300031649 Bacteria 1028
148 Ga0316575_10096457 3300031665 Bacteria 1200
149 Ga0316579_10002937 3300031691 Bacteria 6546
150 Ga0316578_10018176 3300031728 Bacteria 3846
151 Ga0307516_10377686 3300031730 Bacteria 1079
152 Ga0316583_10012156 3300032133 Bacteria 3106
153 Ga0451793_1091684 3300041452 Bacteria 2985
154 Ga0451807_1818940 3300041486 Bacteria 1099
155 Ga0451849_1404347 3300041505 Bacteria 1083
156 Ga0451853_0049782 3300041512 Bacteria 2090
157 Ga0466972_0053075 3300044658 Bacteria 1952
158 Ga0466963_0453583 3300044694 Bacteria 905
159 Ga0466970_0007413 3300044765 Bacteria 5495
160 Ga0466959_0004522 3300045049 Bacteria 9330
161 Ga0495607_0000871 3300046501 Bacteria 28299
162 Ga0495610_0000047 3300046512 Bacteria 151516
163 Ga0495637_0037577 3300046520 Bacteria 2101
164 Ga0495647_0109909 3300046681 Bacteria 1150
165 Ga0495658_0003646 3300046683 Bacteria 7620
166 Ga0495649_0075205 3300046694 Bacteria 1809
167 Ga0495686_0003583 3300047472 Bacteria 13329
168 Ga0495626_0099488 3300048091 Bacteria 1269
169 Ga0496121_0017759 3300048924 Bacteria 7235
170 Ga0496122_0000440 3300048925 Bacteria 87364
171 Ga0496123_0000407 3300048926 Bacteria 78763
172 Ga0496124_0000004 3300048927 Bacteria 976131
173 Ga0496126_0282442 3300048929 Bacteria 1375
174 Ga0501033_0182910 3300049570 Bacteria 1502
175 Ga0501036_0345852 3300049572 Bacteria 1242
176 Ga0501036_0416137 3300049572 Bacteria 1121
177 Ga0501047_0068821 3300049581 Bacteria 3410
178 Ga0501047_0142046 3300049581 Bacteria 2279
179 Ga0501047_0190537 3300049581 Bacteria 1914
180 Ga0501069_0002506 3300049585 Bacteria 9376
181 Ga0501074_0268893 3300049590 Bacteria 1212
182 Ga0501080_1124298 3300049742 Bacteria 677
183 Ga0501044_0143347 3300049823 Bacteria 2377
184 Ga0501044_0244316 3300049823 Bacteria 1738
185 nmdc:mga00v17_27666_c1 3300050491 Bacteria 3313
186 nmdc:mga00v17_6686_c1 3300050491 Bacteria 6126
187 nmdc:mga0k408_426_c1 3300050493 Bacteria 13724
188 nmdc:mga0k408_63180_c1 3300050493 Bacteria 2154
189 nmdc:mga06z11_137026_c1 3300050494 Bacteria 1380
190 nmdc:mga07m45_4021_c1 3300050496 Bacteria 7160
191 nmdc:mga09592_191149_c1 3300050508 Bacteria 1772
192 nmdc:mga08y16_299019_c1 3300050511 Bacteria 1659
193 Ga0500643_017230 3300053087 Bacteria 2424
194 Ga0500651_0039866 3300053093 Bacteria 2958
195 Ga0500597_000235 3300053120 Bacteria 11337
196 Ga0500568_0010867 3300053139 Bacteria 4245
197 Ga0500636_0273820 3300053177 Bacteria 847
198 Ga0501084_0221100 3300054114 Bacteria 1598
199 Ga0501082_0001331 3300060353 Bacteria 21648
200 2857546219 2857542790 Bacteria 5326616
201 2855731657 2855730933 Bacteria 7047938
202 2855768363 2855767633 Bacteria 7049357
203 2895398833 2895395659 Bacteria 3983269
204 3006987565 3006984091 Bacteria 4207523
205 3006991790 3006988479 Bacteria 4767936
206 rootH1_10079052
207 rootL2_10019286
208 Ga0070658_10017209
209 Ga0070670_100482898
210 Ga0070670_100586425
211 Ga0068869_100290259
212 Ga0070666_10077960
213 Ga0070661_100040573
214 Ga0070661_100273976
215 Ga0070668_100008206
216 Ga0070673_100462859
217 Ga0070659_100233046
218 Ga0070667_100000084
219 Ga0070667_100035217
220 Ga0070667_100060560
221 Ga0070667_100156122
222 Ga0070667_100350976
223 Ga0070709_10537193
224 Ga0070708_100512472
225 Ga0070663_100000689
226 Ga0070662_100138596
227 Ga0070706_100011570
228 Ga0070707_100269633
229 Ga0070679_100119194
230 Ga0068853_100008030
231 Ga0068853_100014548
232 Ga0068853_100021406
233 Ga0068853_100083718
234 Ga0068853_100543536
235 Ga0070665_100002001
236 Ga0070665_100041999
237 Ga0070665_100075874
238 Ga0068855_100003763
239 Ga0068855_100007123
240 Ga0068855_100194612
241 Ga0068855_100309248
242 Ga0070664_100328502
243 Ga0068857_100118962
244 Ga0068856_100012869
245 Ga0068852_100127503
246 Ga0068852_100145313
247 Ga0068859_100000125
248 Ga0068864_100038575
249 Ga0068864_100100364
250 Ga0068864_100127600
251 Ga0068851_10027756
252 Ga0068851_10060874
253 Ga0068863_100060817
254 Ga0068863_100159549
255 Ga0068863_100193999
256 Ga0068862_100001848
257 Ga0081455_10276612
258 Ga0075364_10023329
259 Ga0075364_10028830
260 Ga0070712_100735699
261 Ga0075367_10005377
262 Ga0075366_10002449
263 Ga0075366_10033165
264 Ga0075370_10000789
265 Ga0075370_10021000
266 Ga0068871_100029940
267 Ga0097620_100000125
268 Ga0099794_10082944
269 Ga0105240_10014020
270 Ga0111539_10471982
271 Ga0105245_10283983
272 Ga0114129_10246071
273 Ga0105241_10008230
274 Ga0105242_10153611
275 Ga0105248_10000429
276 Ga0105237_10000388
277 Ga0105237_10003573
278 Ga0105238_10002402
279 Ga0105238_10123693
280 Ga0105238_10187787
281 Ga0105249_10000170
282 Ga0105249_10924217
283 Ga0105239_10004116
284 Ga0105239_10015522
285 Ga0157371_10010476
286 Ga0157370_10077585
287 Ga0157369_10001162
288 Ga0157369_10872130
289 Ga0157374_10154869
290 Ga0157374_10286645
291 Ga0157378_10000130
292 Ga0157372_10002301
293 Ga0157379_10670840
294 Ga0209025_1000018
295 Ga0207656_10003440
296 Ga0207680_10008668
297 Ga0207645_10013038
298 Ga0207705_10068559
299 Ga0207684_10011585
300 Ga0207654_10009476
301 Ga0207695_10001009
302 Ga0207671_10012714
303 Ga0207657_10267707
304 Ga0207649_10002383
305 Ga0207681_10380083
306 Ga0207694_10035093
307 Ga0207650_10160157
308 Ga0207650_10291657
309 Ga0207644_10353852
310 Ga0207690_10200164
311 Ga0207706_10216755
312 Ga0207706_10299663
313 Ga0207704_10623492
314 Ga0207691_10260203
315 Ga0207711_10001386
316 Ga0207679_10077718
317 Ga0207667_10004923
318 Ga0207667_10020459
319 Ga0207667_10493995
320 Ga0207712_10000264
321 Ga0207668_10118595
322 Ga0207668_10437787
323 Ga0207640_10015635
324 Ga0207658_10000214
325 Ga0207658_10015651
326 Ga0207658_10123517
327 Ga0207658_10126689
328 Ga0207658_10279698
329 Ga0207677_10624497
330 Ga0207703_10033965
331 Ga0207639_10006224
332 Ga0207639_10020755
333 Ga0207639_10360224
334 Ga0207639_10513764
335 Ga0207639_10578427
336 Ga0207639_10651319
337 Ga0207678_10000288
338 Ga0207678_10062755
339 Ga0207678_10082379
340 Ga0207678_10588136
341 Ga0207702_10006943
342 Ga0207641_10700199
343 Ga0207641_10736869
344 Ga0207674_10071142
345 Ga0207683_10635279
346 Ga0207698_10017207
347 Ga0268266_10194021
348 Ga0268266_10422575
349 Ga0268265_10000664
350 Ga0268264_10057923
351 Ga0307515_10202608
352 Ga0307514_10256705
353 Ga0316575_10096457
354 Ga0316579_10002937
355 Ga0316578_10018176
356 Ga0307516_10377686
357 Ga0316583_10012156
358 Ga0451793_1091684
359 Ga0451807_1818940
360 Ga0451849_1404347
361 Ga0451853_0049782
362 Ga0466972_0053075
363 Ga0466963_0453583
364 Ga0466970_0007413
365 Ga0466959_0004522
366 Ga0495607_0000871
367 Ga0495610_0000047
368 Ga0495637_0037577
369 Ga0495647_0109909
370 Ga0495658_0003646
371 Ga0495649_0075205
372 Ga0495686_0003583
373 Ga0495626_0099488
374 Ga0496121_0017759
375 Ga0496122_0000440
376 Ga0496123_0000407
377 Ga0496124_0000004
378 Ga0496126_0282442
379 Ga0501033_0182910
380 Ga0501036_0345852
381 Ga0501036_0416137
382 Ga0501047_0068821
383 Ga0501047_0142046
384 Ga0501047_0190537
385 Ga0501069_0002506
386 Ga0501074_0268893
387 Ga0501080_1124298
388 Ga0501044_0143347
389 Ga0501044_0244316
390 nmdc:mga00v17_27666_c1
391 nmdc:mga00v17_6686_c1
392 nmdc:mga0k408_426_c1
393 nmdc:mga0k408_63180_c1
394 nmdc:mga06z11_137026_c1
395 nmdc:mga07m45_4021_c1
396 nmdc:mga09592_191149_c1
397 nmdc:mga08y16_299019_c1
398 Ga0500643_017230
399 Ga0500651_0039866
400 Ga0500597_000235
401 Ga0500568_0010867
402 Ga0500636_0273820
403 Ga0501084_0221100
404 Ga0501082_0001331
405 2857546219
406 2855731657
407 2855768363
408 2895398833
409 3006987565
410 3006991790

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03746

LamB_YcsF

LamB/YcsF family

38

275

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
2dfa-assembly1.cif.gz_A crystal structure of lactam utilization protein from thermus thermophilus hb8 0.901 3 217
1v6t-assembly1.cif.gz_A crystal structure of lactam utilization protein from pyrococcus horikoshii ot3 0.8914 3 216
2dfa-assembly1.cif.gz_A crystal structure of lactam utilization protein from thermus thermophilus hb8 0.8663 3 217
1v6t-assembly1.cif.gz_A crystal structure of lactam utilization protein from pyrococcus horikoshii ot3 0.8531 3 216
2xu2-assembly1.cif.gz_A crystal structure of the hypothetical protein pa4511 from pseudomonas aeruginosa 0.8455 3 206
ID Description Score Start End Superfamily
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.9275 3 218 3.20.20.370
2dfaA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.901 3 217 3.20.20.370
af_Q2FXX2_1_250_3.20.20.370 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.8952 3 218 3.20.20.370
1v6tA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Glycoside hydrolase/deacetylase 0.8914 3 216 3.20.20.370
af_Q54NF6_153_360_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8676 90 130 3.40.50.150
ID Description Score Start End GO Terms
AF-T1AZS8-F1-model_v4 LamB/YcsF 0.9874 63 132 GO:0005975
AF-A0A2V6EU26-F1-model_v4 LamB/YcsF family protein 0.9613 107 219 GO:0005975
AF-Q7P4D8-F1-model_v4 Lactam utilization protein LAMB 0.9598 89 217 GO:0005975
AF-A0A6L7EBD4-F1-model_v4 deleted 0.9595 100 217
AF-A0A5P0JK03-F1-model_v4 LamB/YcsF family protein 0.9593 80 190 GO:0005975

Map