F314207

General Info

Members Datasets Scaffolds Average Seq Length
205 154 410 226

Family's Representative Sequence

Representative Sequence 3300044683|Ga0466965_0199973|Ga0466965_0199973_167_964
Length 265
Sequence VYAVHFVKAAMAVAETAAGTERSDPMPKTPSPRERPRLSRDAVLAAALAIADRVGSAGLTMRVLAQELGVVPMALYKHVAGKDELIDGIVDLVWAEVQPPAADDGAAAWRPAMRARAASLRQALRRHPWAVGLLETRLRPGPANLAQHDAMMGCLRRAGFSFRTTVHVTSVLDAYVYGFALQEKTLPFDSADESGEIAAQKLEQQPPELAAMFPYLLEVVAELGAEGYDYDAEFETGLDLILDGVERLRPEWSRAGARPDPAAPR

Samples

Sample ID Description Type Environment
1 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
9 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
10 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
11 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
12 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
13 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
18 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
19 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
20 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
23 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
24 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
34 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
35 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
39 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
40 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
41 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
44 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
45 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
46 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
53 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
56 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
57 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
58 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
59 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
60 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
91 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
92 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
93 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
94 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
95 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
96 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
97 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
98 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
99 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
100 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
101 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
102 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
103 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
104 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
105 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
106 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
107 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
108 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
109 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
110 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
111 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
112 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
113 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
114 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
115 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
116 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
117 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
118 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
119 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
120 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
121 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
122 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
123 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
126 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
127 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
128 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
132 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
133 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
134 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
135 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
136 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
137 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
138 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
139 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
140 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
141 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
142 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
143 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
144 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
145 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
146 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
147 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
148 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
149 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
150 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
151 2919395869 Microbacterium resistens 2980 Isolate Unclassified
152 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
153 2928153084 Leifsonia sp. 563 Isolate Unclassified
154 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.12
Metatranscriptomes 1.95
Isolates 2.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.63
Nodule 0
Rhizoplane 4.39
Rhizosphere 77.56
Stem 0
Stem Tuber 0
Unclassified 0.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466965_0199973 3300044683 Bacteria 1060
2 JGI24740J21852_10016854 3300001979 Bacteria 2629
3 JGI24740J21852_10021756 3300001979 Bacteria 2218
4 JGI24740J21852_10023125 3300001979 Bacteria 2128
5 JGI24739J22299_10016656 3300001989 Bacteria 2658
6 JGI24737J22298_10043297 3300001990 Bacteria 1378
7 JGI24735J21928_10009945 3300002067 Bacteria 3046
8 rootH1_10274092 3300003323 Bacteria 1333
9 Ga0006562J51391_1011572 3300003578 Bacteria 3143
10 Ga0006562J51391_1011573 3300003578 Bacteria 3110
11 Ga0055539_1000014 3300003752 Bacteria 381086
12 Ga0055533_1000002 3300003756 Bacteria 1196393
13 Ga0055525_1000115 3300003759 Bacteria 121883
14 Ga0055525_1002896 3300003759 Bacteria 1621
15 Ga0055527_1000003 3300003760 Bacteria 705001
16 Ga0055542_1000005 3300003762 Bacteria 550280
17 Ga0055529_1000006 3300003763 Bacteria 416978
18 Ga0065714_10005245 3300005288 Bacteria 7951
19 Ga0070658_10073789 3300005327 Bacteria 2798
20 Ga0070658_10083178 3300005327 Bacteria 2631
21 Ga0070683_100076397 3300005329 Bacteria 3130
22 Ga0070683_100179856 3300005329 Bacteria 2007
23 Ga0070683_100321526 3300005329 Bacteria 1473
24 Ga0070660_100385360 3300005339 Bacteria 1157
25 Ga0070661_100354386 3300005344 Bacteria 1152
26 Ga0070692_10102939 3300005345 Bacteria 1568
27 Ga0070673_100427621 3300005364 Bacteria 1188
28 Ga0070659_100057286 3300005366 Bacteria 3073
29 Ga0070713_100108611 3300005436 Bacteria 2416
30 Ga0070710_10345918 3300005437 Bacteria 983
31 Ga0070700_100148434 3300005441 Bacteria 1601
32 Ga0070700_100521425 3300005441 Bacteria 918
33 Ga0070663_100078713 3300005455 Bacteria 2417
34 Ga0070663_100537540 3300005455 Bacteria 975
35 Ga0070681_10392392 3300005458 Bacteria 1299
36 Ga0070679_100011709 3300005530 Bacteria 8361
37 Ga0070679_100730530 3300005530 Bacteria 933
38 Ga0068855_100012475 3300005563 Bacteria 10257
39 Ga0070664_100049665 3300005564 Bacteria 3548
40 Ga0068857_100044559 3300005577 Bacteria 3935
41 Ga0068857_100484677 3300005577 Bacteria 1159
42 Ga0068857_100711310 3300005577 Bacteria 955
43 Ga0068854_100597373 3300005578 Bacteria 942
44 Ga0068854_100795899 3300005578 Bacteria 824
45 Ga0068856_100014093 3300005614 Bacteria 7729
46 Ga0068856_100282041 3300005614 Bacteria 1678
47 Ga0070702_100041840 3300005615 Bacteria 2573
48 Ga0068852_100183729 3300005616 Bacteria 1968
49 Ga0068866_10447887 3300005718 Bacteria 843
50 Ga0068863_100389907 3300005841 Bacteria 1361
51 Ga0068858_100660790 3300005842 Bacteria 1016
52 Ga0081538_10009073 3300005981 Bacteria 8343
53 Ga0081538_10130363 3300005981 Bacteria 1183
54 Ga0070717_10196529 3300006028 Bacteria 1764
55 Ga0075365_10061309 3300006038 Bacteria 2511
56 Ga0075365_10063194 3300006038 Bacteria 2478
57 Ga0075364_10156149 3300006051 Bacteria 1539
58 Ga0075367_10057117 3300006178 Bacteria 2320
59 Ga0075369_10037945 3300006186 Bacteria 2054
60 Ga0075370_10017766 3300006353 Bacteria 3847
61 Ga0068865_100459780 3300006881 Bacteria 1054
62 Ga0105240_10678844 3300009093 Bacteria 1126
63 Ga0105245_10106183 3300009098 Bacteria 2605
64 Ga0105243_10042651 3300009148 Bacteria 3553
65 Ga0105243_10076576 3300009148 Bacteria 2719
66 Ga0105241_10128224 3300009174 Bacteria 2051
67 Ga0105241_11116168 3300009174 Bacteria 743
68 Ga0105237_10108375 3300009545 Bacteria 2769
69 Ga0105238_10228759 3300009551 Bacteria 1836
70 Ga0105246_10200453 3300011119 Bacteria 1551
71 Ga0157371_10328651 3300013102 Bacteria 1110
72 Ga0157370_10151448 3300013104 Bacteria 2158
73 Ga0157369_10653459 3300013105 Bacteria 1084
74 Ga0157369_10662192 3300013105 Bacteria 1076
75 Ga0157369_11096722 3300013105 Bacteria 814
76 Ga0157374_10090043 3300013296 Bacteria 2924
77 Ga0163162_11250170 3300013306 Bacteria 843
78 Ga0157372_10152220 3300013307 Bacteria 2670
79 Ga0157372_10231071 3300013307 Bacteria 2144
80 Ga0157372_10410377 3300013307 Bacteria 1578
81 Ga0157380_10356396 3300014326 Bacteria 1371
82 Ga0206354_11505030 3300020081 Bacteria 4492
83 Ga0206353_11204718 3300020082 Bacteria 3820
84 Ga0209566_100056 3300025225 Bacteria 209595
85 Ga0209674_100001 3300025226 Bacteria 4013750
86 Ga0209672_100003 3300025228 Bacteria 1560476
87 Ga0209147_101047 3300025229 Bacteria 11727
88 Ga0209563_100001 3300025230 Bacteria 4013775
89 Ga0209563_101558 3300025230 Bacteria 5962
90 Ga0209258_103063 3300025242 Bacteria 3829
91 Ga0209677_100001 3300025253 Bacteria 4013787
92 Ga0209677_101177 3300025253 Bacteria 11997
93 Ga0209148_1000004 3300025254 Bacteria 1844481
94 Ga0209455_1000091 3300025272 Bacteria 223115
95 Ga0209455_1002045 3300025272 Bacteria 8182
96 Ga0207705_10034482 3300025909 Bacteria 3619
97 Ga0207705_10467210 3300025909 Bacteria 979
98 Ga0207695_10065485 3300025913 Bacteria 3736
99 Ga0207657_10003781 3300025919 Bacteria 16092
100 Ga0207649_10191035 3300025920 Bacteria 1440
101 Ga0207687_10196786 3300025927 Bacteria 1572
102 Ga0207690_10018090 3300025932 Bacteria 4317
103 Ga0207709_10116227 3300025935 Bacteria 1798
104 Ga0207704_10244149 3300025938 Bacteria 1344
105 Ga0207661_10240733 3300025944 Bacteria 1605
106 Ga0207679_10087537 3300025945 Bacteria 2399
107 Ga0207667_10792205 3300025949 Bacteria 945
108 Ga0207640_10083467 3300025981 Bacteria 2191
109 Ga0207678_10203838 3300026067 Bacteria 1692
110 Ga0207678_10376998 3300026067 Bacteria 1226
111 Ga0207678_10559147 3300026067 Bacteria 1001
112 Ga0207708_10184014 3300026075 Bacteria 1660
113 Ga0207708_10253169 3300026075 Bacteria 1420
114 Ga0207702_10205001 3300026078 Bacteria 1830
115 Ga0207648_10405129 3300026089 Bacteria 1236
116 Ga0207676_10035819 3300026095 Bacteria 3771
117 Ga0207674_10054117 3300026116 Bacteria 4087
118 Ga0207698_10267014 3300026142 Bacteria 1575
119 Ga0265326_10000310 3300028558 Bacteria 21412
120 Ga0265319_1002084 3300028563 Bacteria 11220
121 Ga0265336_10000004 3300028666 Bacteria 418303
122 Ga0265338_10000012 3300028800 Bacteria 418599
123 Ga0265324_10004573 3300029957 Bacteria 6195
124 Ga0265340_10000001 3300031247 Bacteria 1647668
125 Ga0265327_10002362 3300031251 Bacteria 20106
126 Ga0265316_10041376 3300031344 Bacteria 3688
127 Ga0265313_10151411 3300031595 Bacteria 991
128 Ga0307409_100282617 3300031995 Bacteria 1535
129 Ga0307409_100391140 3300031995 Bacteria 1325
130 Ga0307409_100560966 3300031995 Bacteria 1123
131 Ga0307416_100269299 3300032002 Unclassified 1671
132 Ga0395899_0002176 3300037312 Bacteria 16091
133 Ga0395899_0173646 3300037312 Bacteria 1516
134 Ga0395900_0008488 3300037418 Bacteria 10561
135 Ga0395900_0024265 3300037418 Bacteria 6209
136 Ga0395898_0000194 3300037466 Bacteria 155846
137 Ga0395898_0015151 3300037466 Bacteria 7913
138 Ga0395898_0146837 3300037466 Bacteria 2257
139 Ga0395905_0005708 3300037471 Bacteria 12648
140 Ga0395901_0016513 3300038443 Bacteria 7523
141 Ga0395901_0265415 3300038443 Bacteria 1786
142 Ga0466972_0032381 3300044658 Bacteria 2567
143 Ga0466972_0042987 3300044658 Bacteria 2195
144 Ga0466972_0046137 3300044658 Bacteria 2110
145 Ga0466972_0108940 3300044658 Unclassified 1309
146 Ga0466972_0228919 3300044658 Bacteria 870
147 Ga0466966_0034244 3300044684 Bacteria 3284
148 Ga0466961_0029623 3300044693 Bacteria 3517
149 Ga0466961_0092169 3300044693 Bacteria 1913
150 Ga0466961_0093377 3300044693 Bacteria 1898
151 Ga0466961_0115745 3300044693 Bacteria 1685
152 Ga0466964_0050970 3300044706 Bacteria 1699
153 Ga0466971_0035119 3300044719 Bacteria 2248
154 Ga0466968_0061487 3300044735 Bacteria 1620
155 Ga0466970_0029570 3300044765 Bacteria 2885
156 Ga0466970_0056982 3300044765 Bacteria 2088
157 Ga0466957_0050407 3300044842 Bacteria 2533
158 Ga0466960_0005749 3300044901 Bacteria 4935
159 Ga0466960_0024589 3300044901 Bacteria 2719
160 Ga0466959_0021259 3300045049 Bacteria 4785
161 Ga0466959_0021337 3300045049 Bacteria 4776
162 Ga0466967_0150313 3300045976 Bacteria 2176
163 Ga0466967_0419377 3300045976 Bacteria 1304
164 Ga0495608_0136336 3300046511 Bacteria 1568
165 Ga0495587_0242294 3300046536 Bacteria 1015
166 Ga0496101_0149357 3300048904 Bacteria 1786
167 Ga0496102_0017844 3300048905 Bacteria 6223
168 Ga0496102_0282916 3300048905 Bacteria 1563
169 Ga0496103_0045823 3300048906 Bacteria 2699
170 Ga0496104_1021206 3300048907 Bacteria 731
171 Ga0496108_0684770 3300048911 Bacteria 890
172 Ga0496112_0148490 3300048915 Bacteria 2312
173 Ga0496113_0139468 3300048916 Bacteria 1907
174 Ga0496115_0000012 3300048918 Bacteria 215509
175 Ga0496117_0007014 3300048920 Bacteria 11162
176 Ga0501040_0230772 3300049576 Bacteria 1318
177 Ga0501041_0020078 3300049577 Bacteria 3991
178 Ga0501046_0927704 3300049580 Bacteria 606
179 Ga0501070_0000076 3300049586 Bacteria 83972
180 Ga0501071_0047418 3300049587 Bacteria 3087
181 Ga0501072_0062045 3300049588 Bacteria 2949
182 Ga0501072_0336334 3300049588 Bacteria 1199
183 Ga0501075_0119245 3300049591 Bacteria 2007
184 Ga0501079_0024370 3300049741 Bacteria 4642
185 Ga0501079_0197202 3300049741 Bacteria 1572
186 Ga0501080_0358399 3300049742 Bacteria 1316
187 Ga0501081_0371774 3300049743 Bacteria 1055
188 nmdc:mga00v17_132247_c1 3300050491 Bacteria 1595
189 nmdc:mga0k408_302560_c1 3300050493 Bacteria 954
190 nmdc:mga06z11_406636_c1 3300050494 Bacteria 820
191 nmdc:mga07m45_182821_c1 3300050496 Bacteria 1219
192 nmdc:mga0n895_588160_c1 3300050512 Bacteria 1116
193 nmdc:mga0sz30_9493_c2 3300050516 Bacteria 2565
194 Ga0495655_0010463 3300053083 Bacteria 1832
195 Ga0495595_0040106 3300053084 Bacteria 2139
196 Ga0501084_0138189 3300054114 Bacteria 2051
197 Ga0501084_0272051 3300054114 Bacteria 1430
198 Ga0501082_0232627 3300060353 Bacteria 1604
199 Ga0530510_0136785 3300061734 Bacteria 1804
200 2844844226 2844841374 Bacteria 3917147
201 2919056179 2919055335 Bacteria 3875751
202 2919396579 2919395869 Bacteria 3704152
203 2919526192 2919523602 Bacteria 3788128
204 2928154318 2928153084 Bacteria 4020257
205 2939661307 2939660829 Bacteria 3784848
206 Ga0466965_0199973
207 JGI24740J21852_10016854
208 JGI24740J21852_10021756
209 JGI24740J21852_10023125
210 JGI24739J22299_10016656
211 JGI24737J22298_10043297
212 JGI24735J21928_10009945
213 rootH1_10274092
214 Ga0006562J51391_1011572
215 Ga0006562J51391_1011573
216 Ga0055539_1000014
217 Ga0055533_1000002
218 Ga0055525_1000115
219 Ga0055525_1002896
220 Ga0055527_1000003
221 Ga0055542_1000005
222 Ga0055529_1000006
223 Ga0065714_10005245
224 Ga0070658_10073789
225 Ga0070658_10083178
226 Ga0070683_100076397
227 Ga0070683_100179856
228 Ga0070683_100321526
229 Ga0070660_100385360
230 Ga0070661_100354386
231 Ga0070692_10102939
232 Ga0070673_100427621
233 Ga0070659_100057286
234 Ga0070713_100108611
235 Ga0070710_10345918
236 Ga0070700_100148434
237 Ga0070700_100521425
238 Ga0070663_100078713
239 Ga0070663_100537540
240 Ga0070681_10392392
241 Ga0070679_100011709
242 Ga0070679_100730530
243 Ga0068855_100012475
244 Ga0070664_100049665
245 Ga0068857_100044559
246 Ga0068857_100484677
247 Ga0068857_100711310
248 Ga0068854_100597373
249 Ga0068854_100795899
250 Ga0068856_100014093
251 Ga0068856_100282041
252 Ga0070702_100041840
253 Ga0068852_100183729
254 Ga0068866_10447887
255 Ga0068863_100389907
256 Ga0068858_100660790
257 Ga0081538_10009073
258 Ga0081538_10130363
259 Ga0070717_10196529
260 Ga0075365_10061309
261 Ga0075365_10063194
262 Ga0075364_10156149
263 Ga0075367_10057117
264 Ga0075369_10037945
265 Ga0075370_10017766
266 Ga0068865_100459780
267 Ga0105240_10678844
268 Ga0105245_10106183
269 Ga0105243_10042651
270 Ga0105243_10076576
271 Ga0105241_10128224
272 Ga0105241_11116168
273 Ga0105237_10108375
274 Ga0105238_10228759
275 Ga0105246_10200453
276 Ga0157371_10328651
277 Ga0157370_10151448
278 Ga0157369_10653459
279 Ga0157369_10662192
280 Ga0157369_11096722
281 Ga0157374_10090043
282 Ga0163162_11250170
283 Ga0157372_10152220
284 Ga0157372_10231071
285 Ga0157372_10410377
286 Ga0157380_10356396
287 Ga0206354_11505030
288 Ga0206353_11204718
289 Ga0209566_100056
290 Ga0209674_100001
291 Ga0209672_100003
292 Ga0209147_101047
293 Ga0209563_100001
294 Ga0209563_101558
295 Ga0209258_103063
296 Ga0209677_100001
297 Ga0209677_101177
298 Ga0209148_1000004
299 Ga0209455_1000091
300 Ga0209455_1002045
301 Ga0207705_10034482
302 Ga0207705_10467210
303 Ga0207695_10065485
304 Ga0207657_10003781
305 Ga0207649_10191035
306 Ga0207687_10196786
307 Ga0207690_10018090
308 Ga0207709_10116227
309 Ga0207704_10244149
310 Ga0207661_10240733
311 Ga0207679_10087537
312 Ga0207667_10792205
313 Ga0207640_10083467
314 Ga0207678_10203838
315 Ga0207678_10376998
316 Ga0207678_10559147
317 Ga0207708_10184014
318 Ga0207708_10253169
319 Ga0207702_10205001
320 Ga0207648_10405129
321 Ga0207676_10035819
322 Ga0207674_10054117
323 Ga0207698_10267014
324 Ga0265326_10000310
325 Ga0265319_1002084
326 Ga0265336_10000004
327 Ga0265338_10000012
328 Ga0265324_10004573
329 Ga0265340_10000001
330 Ga0265327_10002362
331 Ga0265316_10041376
332 Ga0265313_10151411
333 Ga0307409_100282617
334 Ga0307409_100391140
335 Ga0307409_100560966
336 Ga0307416_100269299
337 Ga0395899_0002176
338 Ga0395899_0173646
339 Ga0395900_0008488
340 Ga0395900_0024265
341 Ga0395898_0000194
342 Ga0395898_0015151
343 Ga0395898_0146837
344 Ga0395905_0005708
345 Ga0395901_0016513
346 Ga0395901_0265415
347 Ga0466972_0032381
348 Ga0466972_0042987
349 Ga0466972_0046137
350 Ga0466972_0108940
351 Ga0466972_0228919
352 Ga0466966_0034244
353 Ga0466961_0029623
354 Ga0466961_0092169
355 Ga0466961_0093377
356 Ga0466961_0115745
357 Ga0466964_0050970
358 Ga0466971_0035119
359 Ga0466968_0061487
360 Ga0466970_0029570
361 Ga0466970_0056982
362 Ga0466957_0050407
363 Ga0466960_0005749
364 Ga0466960_0024589
365 Ga0466959_0021259
366 Ga0466959_0021337
367 Ga0466967_0150313
368 Ga0466967_0419377
369 Ga0495608_0136336
370 Ga0495587_0242294
371 Ga0496101_0149357
372 Ga0496102_0017844
373 Ga0496102_0282916
374 Ga0496103_0045823
375 Ga0496104_1021206
376 Ga0496108_0684770
377 Ga0496112_0148490
378 Ga0496113_0139468
379 Ga0496115_0000012
380 Ga0496117_0007014
381 Ga0501040_0230772
382 Ga0501041_0020078
383 Ga0501046_0927704
384 Ga0501070_0000076
385 Ga0501071_0047418
386 Ga0501072_0062045
387 Ga0501072_0336334
388 Ga0501075_0119245
389 Ga0501079_0024370
390 Ga0501079_0197202
391 Ga0501080_0358399
392 Ga0501081_0371774
393 nmdc:mga00v17_132247_c1
394 nmdc:mga0k408_302560_c1
395 nmdc:mga06z11_406636_c1
396 nmdc:mga07m45_182821_c1
397 nmdc:mga0n895_588160_c1
398 nmdc:mga0sz30_9493_c2
399 Ga0495655_0010463
400 Ga0495595_0040106
401 Ga0501084_0138189
402 Ga0501084_0272051
403 Ga0501082_0232627
404 Ga0530510_0136785
405 2844844226
406 2919056179
407 2919396579
408 2919526192
409 2928154318
410 2939661307

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

43

89

0.96

PF02909

TetR_C_1

Tetracyclin repressor-like, C-terminal domain

100

249

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3fiw-assembly1.cif.gz_B structure of sco0253, a tetr-family transcriptional regulator from streptomyces coelicolor 0.8395 12 154
3b6c-assembly1.cif.gz_A crystal structure of the streptomyces coelicolor tetr family protein actr in complex with (s)-dnpa 0.8394 10 218
2x6o-assembly1.cif.gz_A-2 tet repressor class d in complex with 7-chlor-2-cyano-iso- tetracycline 0.8343 10 217
3zqf-assembly1.cif.gz_A-2 structure of tetracycline repressor in complex with antiinducer peptide-tap1 0.8334 11 217
1bjz-assembly1.cif.gz_A-2 tetracycline chelated mg2+-ion initiates helix unwinding for tet repressor induction 0.8306 12 217
ID Description Score Start End Superfamily
5ojxA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9774 15 66 1.10.10.60
1qpiA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.972 12 69 1.10.10.60
2y30B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9658 16 65 1.10.10.60
2y2zA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9635 10 66 1.10.10.60
3fiwB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9539 15 60 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A421A626-F1-model_v4 deleted 0.992 1 226
AF-A0A421A626-F1-model_v4 deleted 0.9833 1 226
AF-A0A7W0PF65-F1-model_v4 TetR family transcriptional regulator 0.9821 8 121 GO:0000976
GO:0003700
GO:0045892
AF-A0A7G6YGN5-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9802 18 218 GO:0000976
GO:0003700
GO:0045892
GO:0046677
GO:0046872
AF-A0A0Q5LP84-F1-model_v4 AcrR family transcriptional regulator 0.9756 1 218 GO:0000976
GO:0003700
GO:0045892
GO:0046677
GO:0046872

Map