F313223

General Info

Members Datasets Scaffolds Average Seq Length
204 128 408 451

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2998344455|2998346363
Length 527
Sequence QHIAQIESLDHEGRGVAHVEGKTIFIEGALPYEVVTYSSFRKKPSYENAVAVEVLKDSYMRTEPSCPHYGVCGGCSMQHVEFTAQVAIKQRVMEDNLARIGRVKPEVVMTPIAGPAWGYRHRARLSARLVEKKGGVLVGFHEKRSSFIADMNECHILPKHISALITPLREMIIKLSINNRMPQVEVAVGAEVDILVFRNMEAITDNDFAILKAFSDTHSQPGRPLQVWLQPKGPETCYPIYPLDAPKLTYRLRDFDVEMPYYPTEFTQVNPDINNVMVSRALRLLDPQAGERIADMFCGIGNFTLPIARSGATVHGMEGSHALVKRAVENATHNGLQDKVSYEMANLFDVTEESLAALGKFDKMLIDPPRDGAIQLVKAFTEETAPQRLVYVSCNPSTLARDAGVLVHTKGYTLKAAGIVNMFPHTGHVESIAWFEKTSPCMTREEVDAMEAAEEAERAIAREAAIAARELREAELAQIKAAEKAEKLAAKAARTAEFQARTAANAEKRAAFEARQAEGDAGSEQAE

Samples

Sample ID Description Type Environment
1 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
13 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
14 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
15 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
16 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
17 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
18 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
19 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
20 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
21 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
22 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
23 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
24 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
25 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
26 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
27 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
28 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
36 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
37 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
38 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
39 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
40 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
41 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
42 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
43 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
44 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
45 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
46 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
47 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
48 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
49 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
50 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
51 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
52 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
53 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
54 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
55 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
56 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
57 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
58 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
59 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
60 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
61 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
62 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
63 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
64 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
65 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
66 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
67 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
68 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
69 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
70 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
71 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
72 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
73 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
74 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
75 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
76 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
77 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
78 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
79 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
80 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
81 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
82 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
83 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
84 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
85 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
86 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
87 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
88 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
89 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
90 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
91 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
92 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
93 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
94 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
95 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
96 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
97 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
98 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
101 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
102 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
103 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
106 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
107 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
108 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
109 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
112 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
113 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
114 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
115 3300053729 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere Metagenome Endosphere
116 2998344455 Vogesella urethralis SLBN-145 Isolate Rhizosphere
117 2547132103 Chromobacterium sp. C-61 Isolate Rhizosphere
118 2600255292 Janthinobacterium lividum NFR18 Isolate Rhizoplane
119 2842711865 Duganella sp. R-73148 Isolate Unclassified
120 2843690924 Chromobacterium rhizoryzae JP2-74 Isolate Rhizosphere
121 2846033681 Chromobacterium sinusclupearum MWU13-2610 Isolate Rhizosphere
122 2846037992 Chromobacterium alticapitis MWU14-2602 Isolate Rhizosphere
123 2857558681 Duganella sp. R-74565 Isolate Unclassified
124 2885080285 Janthinobacterium sp. AD80 Isolate Rhizosphere
125 2919476304 Duganella sp. 3397 Isolate Unclassified
126 2932410948 Janthinobacterium lividum 2829 Isolate Rhizosphere
127 2932416698 Janthinobacterium lividum 2830 Isolate Rhizosphere
128 8048746797 Alcaligenes endophyticus DSM 100498 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.63
Metatranscriptomes 0
Isolates 6.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.9
Nodule 0.49
Rhizoplane 2.45
Rhizosphere 84.8
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001714 3300002738 Bacteria 7165
2 rootL2_10043900 3300003322 Bacteria 4716
3 Ga0055526_1000256 3300003771 Bacteria 44998
4 Ga0070680_100136148 3300005336 Bacteria 2058
5 Ga0068868_100082674 3300005338 Bacteria 2576
6 Ga0070675_100174728 3300005354 Bacteria 1854
7 Ga0070674_100054989 3300005356 Bacteria 2755
8 Ga0070694_100159430 3300005444 Bacteria 1654
9 Ga0070678_100178821 3300005456 Bacteria 1734
10 Ga0068853_100011828 3300005539 Bacteria 7095
11 Ga0068855_100015561 3300005563 Bacteria 9157
12 Ga0075431_100016258 3300006847 Bacteria 7548
13 Ga0099794_10060173 3300007265 Bacteria 1844
14 Ga0105237_10048735 3300009545 Bacteria 4258
15 Ga0157374_10002460 3300013296 Bacteria 15637
16 Ga0163162_10083113 3300013306 Bacteria 3275
17 Ga0157372_10281540 3300013307 Bacteria 1933
18 Ga0182006_1000117 3300015261 Bacteria 85963
19 Ga0182005_1000007 3300015265 Bacteria 490994
20 Ga0163161_10060434 3300017792 Bacteria 2758
21 Ga0213872_10000215 3300021361 Bacteria 51118
22 Ga0213872_10000552 3300021361 Bacteria 29038
23 Ga0213872_10003657 3300021361 Bacteria 8433
24 Ga0213872_10012791 3300021361 Bacteria 3939
25 Ga0207425_1000646 3300025245 Bacteria 19361
26 Ga0209646_1000010 3300025246 Bacteria 573803
27 Ga0209026_1004909 3300025250 Bacteria 3776
28 Ga0209025_1031872 3300025294 Bacteria 2480
29 Ga0209564_1000033 3300025295 Bacteria 446200
30 Ga0209758_1002669 3300025297 Bacteria 17617
31 Ga0207654_10153428 3300025911 Bacteria 1481
32 Ga0207707_10134696 3300025912 Bacteria 2160
33 Ga0207671_10019586 3300025914 Bacteria 5172
34 Ga0207677_10077935 3300026023 Bacteria 2365
35 Ga0207674_10067006 3300026116 Bacteria 3615
36 Ga0209281_1008955 3300027111 Bacteria 2382
37 Ga0307515_10128211 3300028794 Bacteria 2816
38 Ga0307509_10000033 3300031507 Bacteria 194363
39 Ga0307408_100001235 3300031548 Bacteria 19185
40 Ga0316575_10000223 3300031665 Bacteria 15137
41 Ga0307405_10118039 3300031731 Bacteria 1810
42 Ga0307416_100133956 3300032002 Bacteria 2237
43 Ga0373937_0151711 3300036401 Bacteria 2171
44 Ga0395899_0000028 3300037312 Bacteria 334378
45 Ga0395900_0020123 3300037418 Bacteria 6808
46 Ga0395905_0019945 3300037471 Bacteria 6353
47 Ga0395905_0098987 3300037471 Bacteria 2739
48 Ga0395905_0129668 3300037471 Bacteria 2372
49 Ga0436361_0202986 3300039447 Bacteria 20420
50 Ga0436361_0624383 3300039447 Bacteria 1637
51 Ga0436361_0739768 3300039447 Bacteria 83506
52 Ga0436361_0818780 3300039447 Bacteria 3058
53 Ga0436361_0974268 3300039447 Bacteria 66829
54 Ga0436361_1032796 3300039447 Bacteria 1555
55 Ga0436361_1076139 3300039447 Bacteria 12073
56 Ga0439455_0000993 3300042012 Bacteria 4451
57 Ga0466969_0002664 3300044656 Bacteria 9541
58 Ga0466966_0105615 3300044684 Bacteria 1738
59 Ga0466961_0000970 3300044693 Bacteria 17776
60 Ga0466961_0100410 3300044693 Bacteria 1823
61 Ga0466964_0000348 3300044706 Bacteria 13849
62 Ga0453684_0053714 3300044712 Bacteria 5256
63 Ga0451576_0029467 3300045051 Bacteria 5873
64 Ga0451576_0240962 3300045051 Bacteria 1889
65 Ga0451576_0315742 3300045051 Bacteria 1635
66 Ga0466967_0049312 3300045976 Bacteria 3681
67 Ga0495617_001141 3300046452 Bacteria 12017
68 Ga0495627_000055 3300046453 Bacteria 149482
69 Ga0495627_010813 3300046453 Bacteria 3299
70 Ga0495590_0000197 3300046457 Bacteria 33973
71 Ga0495638_0003452 3300046460 Bacteria 12447
72 Ga0495638_0011752 3300046460 Bacteria 6027
73 Ga0495650_0000048 3300046471 Bacteria 334427
74 Ga0495650_0000161 3300046471 Bacteria 149996
75 Ga0495650_0007498 3300046471 Bacteria 6543
76 Ga0495584_0000613 3300046491 Bacteria 23870
77 Ga0495584_0000775 3300046491 Bacteria 21120
78 Ga0495584_0001544 3300046491 Bacteria 13682
79 Ga0495584_0058410 3300046491 Bacteria 1940
80 Ga0495584_0071501 3300046491 Bacteria 1743
81 Ga0495585_0001109 3300046492 Bacteria 22188
82 Ga0495585_0001134 3300046492 Bacteria 21875
83 Ga0495585_0008907 3300046492 Bacteria 6052
84 Ga0495585_0009150 3300046492 Bacteria 5960
85 Ga0495585_0016048 3300046492 Bacteria 4342
86 Ga0495596_0000658 3300046500 Bacteria 21627
87 Ga0495596_0021954 3300046500 Bacteria 2600
88 Ga0495607_0003910 3300046501 Bacteria 11223
89 Ga0495607_0004695 3300046501 Bacteria 9998
90 Ga0495583_0000155 3300046506 Bacteria 114870
91 Ga0495583_0000660 3300046506 Bacteria 45145
92 Ga0495583_0004840 3300046506 Bacteria 9420
93 Ga0495606_0000232 3300046507 Bacteria 98402
94 Ga0495606_0000510 3300046507 Bacteria 63022
95 Ga0495606_0001974 3300046507 Bacteria 25292
96 Ga0495606_0005865 3300046507 Bacteria 11572
97 Ga0495606_0013828 3300046507 Bacteria 6340
98 Ga0495606_0018081 3300046507 Bacteria 5300
99 Ga0495606_0021263 3300046507 Bacteria 4755
100 Ga0495610_0000683 3300046512 Bacteria 32754
101 Ga0495610_0004222 3300046512 Bacteria 10699
102 Ga0495610_0032521 3300046512 Bacteria 2708
103 Ga0495616_0001606 3300046513 Bacteria 15493
104 Ga0495616_0005255 3300046513 Bacteria 7994
105 Ga0495616_0008632 3300046513 Bacteria 6017
106 Ga0495631_0003244 3300046518 Bacteria 8943
107 Ga0495631_0009449 3300046518 Bacteria 4872
108 Ga0495643_0000228 3300046522 Bacteria 84885
109 Ga0495643_0021774 3300046522 Bacteria 3669
110 Ga0495643_0027822 3300046522 Bacteria 3173
111 Ga0495644_0001028 3300046523 Bacteria 11618
112 Ga0495644_0040007 3300046523 Bacteria 1767
113 Ga0495648_0000817 3300046524 Bacteria 32957
114 Ga0495648_0002301 3300046524 Bacteria 17789
115 Ga0495648_0016201 3300046524 Bacteria 5378
116 Ga0495642_0017353 3300046528 Bacteria 2812
117 Ga0495642_0068180 3300046528 Bacteria 1484
118 Ga0495665_0083423 3300046531 Bacteria 1680
119 Ga0495609_0001035 3300046538 Bacteria 19527
120 Ga0495609_0002197 3300046538 Bacteria 12244
121 Ga0495609_0026017 3300046538 Bacteria 2679
122 Ga0495609_0034476 3300046538 Bacteria 2294
123 Ga0495621_0014438 3300046539 Bacteria 2499
124 Ga0495597_0003043 3300046542 Bacteria 10099
125 Ga0495622_0000078 3300046557 Bacteria 86309
126 Ga0495633_0000876 3300046558 Bacteria 26039
127 Ga0495633_0002044 3300046558 Bacteria 14550
128 Ga0495633_0005150 3300046558 Bacteria 8101
129 Ga0495633_0009807 3300046558 Bacteria 5263
130 Ga0495633_0013535 3300046558 Bacteria 4293
131 Ga0495668_0001181 3300046616 Bacteria 26547
132 Ga0495668_0028137 3300046616 Bacteria 3180
133 Ga0495611_0004817 3300046648 Bacteria 5800
134 Ga0495625_0016283 3300046660 Bacteria 5856
135 Ga0495625_0024724 3300046660 Bacteria 4566
136 Ga0495659_0002130 3300046664 Bacteria 6454
137 Ga0495661_0001489 3300046665 Bacteria 19529
138 Ga0495661_0006604 3300046665 Bacteria 8147
139 Ga0495661_0019050 3300046665 Bacteria 4501
140 Ga0495661_0035688 3300046665 Bacteria 3117
141 Ga0495661_0044667 3300046665 Bacteria 2714
142 Ga0495661_0061363 3300046665 Bacteria 2232
143 Ga0495670_0001122 3300046691 Bacteria 12980
144 Ga0495670_0002905 3300046691 Bacteria 8441
145 Ga0495670_0026502 3300046691 Bacteria 2869
146 Ga0495649_0059707 3300046694 Bacteria 2053
147 Ga0495589_0009961 3300046794 Bacteria 4938
148 Ga0495589_0104017 3300046794 Bacteria 1372
149 Ga0495660_0050106 3300046810 Bacteria 2276
150 Ga0495636_0000846 3300047318 Bacteria 11287
151 Ga0495674_0086213 3300047319 Bacteria 2689
152 Ga0495672_0000998 3300047320 Bacteria 29218
153 Ga0495672_0001864 3300047320 Bacteria 20070
154 Ga0495683_0000343 3300047323 Bacteria 38546
155 Ga0495683_0007435 3300047323 Bacteria 5922
156 Ga0495687_000395 3300047443 Bacteria 54190
157 Ga0495687_008311 3300047443 Bacteria 5959
158 Ga0495677_0010595 3300047445 Bacteria 3382
159 Ga0495677_0014675 3300047445 Bacteria 2849
160 Ga0495677_0016770 3300047445 Bacteria 2656
161 Ga0495685_000152 3300047447 Bacteria 23510
162 Ga0495673_0000024 3300047469 Bacteria 521349
163 Ga0495681_0006011 3300047470 Bacteria 8039
164 Ga0495681_0016361 3300047470 Bacteria 4160
165 Ga0495686_0002103 3300047472 Bacteria 19509
166 Ga0495614_0008898 3300048089 Bacteria 4455
167 Ga0495626_0018906 3300048091 Bacteria 3449
168 Ga0496101_0160092 3300048904 Bacteria 1726
169 Ga0496102_0020383 3300048905 Bacteria 5859
170 Ga0496108_0053338 3300048911 Bacteria 3391
171 Ga0496109_0131378 3300048912 Bacteria 2337
172 Ga0496117_0000547 3300048920 Bacteria 61730
173 Ga0496118_0003101 3300048921 Bacteria 21317
174 Ga0496121_0200883 3300048924 Bacteria 1421
175 Ga0496125_0005102 3300048928 Bacteria 14777
176 Ga0496126_0000374 3300048929 Bacteria 92435
177 Ga0495678_000223 3300049459 Bacteria 65751
178 Ga0495678_000916 3300049459 Bacteria 25953
179 Ga0495678_001054 3300049459 Bacteria 23333
180 Ga0495678_002291 3300049459 Bacteria 13267
181 Ga0495678_005073 3300049459 Bacteria 7396
182 Ga0495682_0002758 3300049460 Bacteria 8141
183 Ga0495682_0002891 3300049460 Bacteria 7894
184 Ga0495682_0016290 3300049460 Bacteria 2814
185 nmdc:mga06r32_9595_c1 3300050510 Bacteria 8743
186 nmdc:mga08y16_405449_c1 3300050511 Bacteria 1395
187 Ga0500618_009535 3300053125 Bacteria 2645
188 Ga0500586_005326 3300053145 Bacteria 3245
189 Ga0500636_0000165 3300053177 Bacteria 34706
190 Ga0500637_0020833 3300053178 Bacteria 3557
191 Ga0500625_017520 3300053729 Bacteria 3346
192 2998346363 2998344455 Bacteria 4222996
193 2547372411 2547132103 Bacteria 5115736
194 2601667382 2600255292 Bacteria 6300551
195 2842714390 2842711865 Bacteria 7155354
196 2843693856 2843690924 Bacteria 5169057
197 2846035786 2846033681 Bacteria 4377894
198 2846041129 2846037992 Bacteria 4526407
199 2857561511 2857558681 Bacteria 6617694
200 2885083895 2885080285 Bacteria 6355622
201 2919478717 2919476304 Bacteria 5888696
202 2932411001 2932410948 Bacteria 6312192
203 2932419432 2932416698 Bacteria 6315112
204 8048749547 8048746797 Bacteria 3557226
205 JGI25154J39366_1001714
206 rootL2_10043900
207 Ga0055526_1000256
208 Ga0070680_100136148
209 Ga0068868_100082674
210 Ga0070675_100174728
211 Ga0070674_100054989
212 Ga0070694_100159430
213 Ga0070678_100178821
214 Ga0068853_100011828
215 Ga0068855_100015561
216 Ga0075431_100016258
217 Ga0099794_10060173
218 Ga0105237_10048735
219 Ga0157374_10002460
220 Ga0163162_10083113
221 Ga0157372_10281540
222 Ga0182006_1000117
223 Ga0182005_1000007
224 Ga0163161_10060434
225 Ga0213872_10000215
226 Ga0213872_10000552
227 Ga0213872_10003657
228 Ga0213872_10012791
229 Ga0207425_1000646
230 Ga0209646_1000010
231 Ga0209026_1004909
232 Ga0209025_1031872
233 Ga0209564_1000033
234 Ga0209758_1002669
235 Ga0207654_10153428
236 Ga0207707_10134696
237 Ga0207671_10019586
238 Ga0207677_10077935
239 Ga0207674_10067006
240 Ga0209281_1008955
241 Ga0307515_10128211
242 Ga0307509_10000033
243 Ga0307408_100001235
244 Ga0316575_10000223
245 Ga0307405_10118039
246 Ga0307416_100133956
247 Ga0373937_0151711
248 Ga0395899_0000028
249 Ga0395900_0020123
250 Ga0395905_0019945
251 Ga0395905_0098987
252 Ga0395905_0129668
253 Ga0436361_0202986
254 Ga0436361_0624383
255 Ga0436361_0739768
256 Ga0436361_0818780
257 Ga0436361_0974268
258 Ga0436361_1032796
259 Ga0436361_1076139
260 Ga0439455_0000993
261 Ga0466969_0002664
262 Ga0466966_0105615
263 Ga0466961_0000970
264 Ga0466961_0100410
265 Ga0466964_0000348
266 Ga0453684_0053714
267 Ga0451576_0029467
268 Ga0451576_0240962
269 Ga0451576_0315742
270 Ga0466967_0049312
271 Ga0495617_001141
272 Ga0495627_000055
273 Ga0495627_010813
274 Ga0495590_0000197
275 Ga0495638_0003452
276 Ga0495638_0011752
277 Ga0495650_0000048
278 Ga0495650_0000161
279 Ga0495650_0007498
280 Ga0495584_0000613
281 Ga0495584_0000775
282 Ga0495584_0001544
283 Ga0495584_0058410
284 Ga0495584_0071501
285 Ga0495585_0001109
286 Ga0495585_0001134
287 Ga0495585_0008907
288 Ga0495585_0009150
289 Ga0495585_0016048
290 Ga0495596_0000658
291 Ga0495596_0021954
292 Ga0495607_0003910
293 Ga0495607_0004695
294 Ga0495583_0000155
295 Ga0495583_0000660
296 Ga0495583_0004840
297 Ga0495606_0000232
298 Ga0495606_0000510
299 Ga0495606_0001974
300 Ga0495606_0005865
301 Ga0495606_0013828
302 Ga0495606_0018081
303 Ga0495606_0021263
304 Ga0495610_0000683
305 Ga0495610_0004222
306 Ga0495610_0032521
307 Ga0495616_0001606
308 Ga0495616_0005255
309 Ga0495616_0008632
310 Ga0495631_0003244
311 Ga0495631_0009449
312 Ga0495643_0000228
313 Ga0495643_0021774
314 Ga0495643_0027822
315 Ga0495644_0001028
316 Ga0495644_0040007
317 Ga0495648_0000817
318 Ga0495648_0002301
319 Ga0495648_0016201
320 Ga0495642_0017353
321 Ga0495642_0068180
322 Ga0495665_0083423
323 Ga0495609_0001035
324 Ga0495609_0002197
325 Ga0495609_0026017
326 Ga0495609_0034476
327 Ga0495621_0014438
328 Ga0495597_0003043
329 Ga0495622_0000078
330 Ga0495633_0000876
331 Ga0495633_0002044
332 Ga0495633_0005150
333 Ga0495633_0009807
334 Ga0495633_0013535
335 Ga0495668_0001181
336 Ga0495668_0028137
337 Ga0495611_0004817
338 Ga0495625_0016283
339 Ga0495625_0024724
340 Ga0495659_0002130
341 Ga0495661_0001489
342 Ga0495661_0006604
343 Ga0495661_0019050
344 Ga0495661_0035688
345 Ga0495661_0044667
346 Ga0495661_0061363
347 Ga0495670_0001122
348 Ga0495670_0002905
349 Ga0495670_0026502
350 Ga0495649_0059707
351 Ga0495589_0009961
352 Ga0495589_0104017
353 Ga0495660_0050106
354 Ga0495636_0000846
355 Ga0495674_0086213
356 Ga0495672_0000998
357 Ga0495672_0001864
358 Ga0495683_0000343
359 Ga0495683_0007435
360 Ga0495687_000395
361 Ga0495687_008311
362 Ga0495677_0010595
363 Ga0495677_0014675
364 Ga0495677_0016770
365 Ga0495685_000152
366 Ga0495673_0000024
367 Ga0495681_0006011
368 Ga0495681_0016361
369 Ga0495686_0002103
370 Ga0495614_0008898
371 Ga0495626_0018906
372 Ga0496101_0160092
373 Ga0496102_0020383
374 Ga0496108_0053338
375 Ga0496109_0131378
376 Ga0496117_0000547
377 Ga0496118_0003101
378 Ga0496121_0200883
379 Ga0496125_0005102
380 Ga0496126_0000374
381 Ga0495678_000223
382 Ga0495678_000916
383 Ga0495678_001054
384 Ga0495678_002291
385 Ga0495678_005073
386 Ga0495682_0002758
387 Ga0495682_0002891
388 Ga0495682_0016290
389 nmdc:mga06r32_9595_c1
390 nmdc:mga08y16_405449_c1
391 Ga0500618_009535
392 Ga0500586_005326
393 Ga0500636_0000165
394 Ga0500637_0020833
395 Ga0500625_017520
396 2998346363
397 2547372411
398 2601667382
399 2842714390
400 2843693856
401 2846035786
402 2846041129
403 2857561511
404 2885083895
405 2919478717
406 2932411001
407 2932419432
408 8048749547

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF09445

Methyltransf_15

RNA cap guanine-N2 methyltransferase

290

379

0.94

PF13847

Methyltransf_31

Methyltransferase domain

287

408

0.86

PF02475

Met_10

Met-10+ like-protein

272

384

0.83

PF05958

tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

81

438

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1uwv-assembly1.cif.gz_A crystal structure of ruma, the iron-sulfur cluster containing e. coli 23s ribosomal rna 5-methyluridine methyltransferase 0.934 5 443
1uwv-assembly1.cif.gz_A crystal structure of ruma, the iron-sulfur cluster containing e. coli 23s ribosomal rna 5-methyluridine methyltransferase 0.9233 5 443
5xj1-assembly1.cif.gz_A crystal structure of sprlmcd 0.8601 1 443
5xj1-assembly1.cif.gz_A crystal structure of sprlmcd 0.8547 1 443
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.8442 1 445
ID Description Score Start End Superfamily
af_O07191_4_80_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9357 5 75 2.40.50.140
1uwvA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9161 271 443 3.40.50.150
1uwvA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.9091 128 269 2.40.50.1070
af_A0A1D6FP61_65_209_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.904 291 334 3.40.50.150
1uwvA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.9027 128 269 2.40.50.1070
ID Description Score Start End GO Terms
AF-A0A0Q8Y2A4-F1-model_v4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (EC 2.1.1.190) (23S rRNA(m5U1939)-methyltransferase) 0.9763 2 445 GO:0003723
GO:0005506
GO:0051539
GO:0070041
GO:0070475
AF-A0A2N2T2U8-F1-model_v4 23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD 0.9703 68 445 GO:0003723
GO:0070041
GO:0070475
AF-A0A7Y5DI89-F1-model_v4 Methyltransferase domain-containing protein 0.97 220 445 GO:0070041
GO:0070475
AF-A0A848NQX5-F1-model_v4 TRAM domain-containing protein 0.9696 5 217 GO:0070041
GO:0070475
AF-A0A480BVR0-F1-model_v4 23S rRNA (Uracil(1939)-C(5))-methyltransferase 0.9689 5 288 GO:0070041
GO:0070475

Map