F311903

General Info

Members Datasets Scaffolds Average Seq Length
203 162 406 705

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2816332295|2817478599
Length 740
Sequence NKRMHEQESDVMDLSKTVVLAEKPSVGRDLARVLKCHKKGNGYLEGDRYIVTWALGHLVTLADPEGYGKEFQSWRLEDLPIIPEPLKLVVIKKTGKQFQAVKSQLIRKDVKDIVIATDAGREGELVARWIIEKAKITKPLKRLWISSVTDKAIKDGFKNLKNGKDFENLYHSAVARAEADWIVGINATRALTTKFNAQLSCGRVQTPTLAMIAKREEDIKNFKPVPYFGLRAAVDGMTLTWQDKKTKQTRTFNASVTSQLAGALQGKPAAIVDLKKTAKKSFAPGLYDLTELQRDAHKRYGFSAKETLSVLQKLYEQHKLVTYPRTDSRFLSNDIVPTLKDRLEGMQVKPYAQHVTRILKHGVKVNKSFVNDAKVSDHHAIIPTEEPLALGALSEKERKLYDLIAKRFLAVLMPPFEYEETKVFAEIGGETFTAKGKTVQSQGWKAVYDFADEDDDEEEKDQTLPKLAKGDTLSVRSLTETKGETKPPARFNEGTLLSAMENPAAFMQGEEKKLVKTLGETGGLGTVATRADIIEKLFNTFLIEKKGKDIYITSKGKQLLELVPSDLKSPALTAEWEQKLSGIAKGKLKSSAFIKEMKEYAKQTIREIKSSNQTFKHDNITGTHCPDCGKLMLKVNGKRGTMLVCQDRECGHRKTVAKQTNARCPNCHKRMELRGHGEGQTFACVCGHREKLSVFEKRRAKDKNSKASKRDVHSYMKKQNKDEPINNALAEQLKKLKLDQ

Samples

Sample ID Description Type Environment
1 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
4 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
5 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
6 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
7 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
8 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
9 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
10 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
11 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
12 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
13 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
14 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
15 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
16 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
17 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
18 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
19 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
20 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
21 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
22 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
23 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
24 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
25 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
26 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
27 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
28 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
29 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
30 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
31 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
32 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
33 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
34 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
35 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
36 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
37 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
38 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
39 2511231119 Bacillus velezensis CAU B946 Isolate Rhizosphere
40 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
41 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
42 2540341094 Bacillus subtilis XF-1 Isolate Rhizosphere
43 2545555800 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
44 2548877040 Paenibacillus sonchi X19-5 Isolate Rhizosphere
45 2554235283 Bacillus safensis VK Isolate Rhizosphere
46 2554235469 Sporolactobacillus laevolacticus DSM 442 Isolate Rhizosphere
47 2563366752 Paenibacillus pini JCM 16418 Isolate Rhizosphere
48 2571042143 Paenibacillus graminis RSA19 Isolate Unclassified
49 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
50 2576861599 Bacillus amyloliquefaciens EGD-AQ14 Isolate Rhizosphere
51 2593339131 Bacillus sp. UNCCL81 Isolate Unclassified
52 2600255286 Paenibacillus sp. NFR01 Isolate Rhizoplane
53 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
54 2630968484 Bacillus methylotrophicus KACC 13105 Isolate Rhizosphere
55 2643221543 Paenibacillus sp. Root52 Isolate Unclassified
56 2643221735 Bacillus sp. Root920 Isolate Unclassified
57 2648501850 Bacillus amyloliquefaciens RHNK22 Isolate Rhizosphere
58 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
59 2671180844 Bacillus amyloliquefaciens Bs006 Isolate Unclassified
60 2684623153 Bacillus pumilus SH-B9 Isolate Unclassified
61 2687453109 Bacillus pumilus SH-B11 Isolate Unclassified
62 2695420354 Bacillus sp. Co1-6 Isolate Unclassified
63 2711768088 Sporolactobacillus terrae DSM 11697 Isolate Rhizosphere
64 2716884898 Bacillus methylotrophicus FKM10 Isolate Rhizosphere
65 2721755693 Paenibacillus polymyxa YC0573 Isolate Rhizosphere
66 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
67 2738541299 Paenisporosarcina sp. OV554 Isolate Unclassified
68 2738543010 Bacillus sp. YR335 Isolate Unclassified
69 2738543017 Bacillus sp. OV186 Isolate Unclassified
70 2744054657 Brevibacillus sp. SKDU10 Isolate Unclassified
71 2751185905 Paenibacillus kribbensis 6hRe76 Isolate Unclassified
72 2757320391 Bacillus sp. NFR08 Isolate Rhizoplane
73 2775507177 Bacillus sp. AFS055030 Isolate Unclassified
74 2775507192 Bacillus sp. AFS041924 Isolate Unclassified
75 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
76 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
77 2808606399 Bacillus sp. SJZ110 Isolate Rhizosphere
78 2811994870 Bacillus sp. JB4 Isolate Unclassified
79 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
80 2816332336 Brevibacillus laterosporus ZQ2 Isolate Unclassified
81 2818991441 Niallia circulans 3243 Isolate Rhizosphere
82 2818991468 Bacillus safensis 3300 Isolate Rhizosphere
83 2821111986 Paenibacillus illinoisensis 582 Isolate Unclassified
84 2823526263 Bacillus altitudinis P-10 Isolate Unclassified
85 2842682962 Bacillus sp. R-72492 Isolate Unclassified
86 2849139964 Bacillus sp. R-71875 Isolate Unclassified
87 2852673933 Sporosarcina sp. JAI121 Isolate Rhizosphere
88 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
89 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
90 2857581216 Bacillus sp. R-71922 Isolate Unclassified
91 2857586860 Bacillus sp. R-71935 Isolate Unclassified
92 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
93 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
94 2860837431 Bacillus sp. WR11 Isolate Unclassified
95 2864733723 Paenibacillus sp. JGP012 Isolate Rhizosphere
96 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
97 2877768649 Bacillus amyloliquefaciens Y14 Isolate Rhizosphere
98 2880169592 Bacillus velezensis T20E-257 Isolate Unclassified
99 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
100 2881644220 Siminovitchia terrae LMG 29736 Isolate Rhizosphere
101 2885526491 Paenibacillus sp. LK1 Isolate Rhizosphere
102 2889042446 Paenibacillus sp. 37 Isolate Rhizosphere
103 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
104 2897109615 Bacillus amyloliquefaciens YP6 Isolate Unclassified
105 2904162308 Paenibacillus sp. AD87 Isolate Unclassified
106 2904490793 Paenibacillus sp. 1295 Isolate Rhizosphere
107 2904560550 Bacillus velezensis 1780 Isolate Rhizosphere
108 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
109 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
110 2908665501 Bacillus pumilus 1391 Isolate Rhizosphere
111 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
112 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
113 2919093281 Bacillus safensis 1383 Isolate Rhizosphere
114 2919160200 Paenibacillus sp. 2003 Isolate Unclassified
115 2919726948 Bacillus pumilus 4489 Isolate Unclassified
116 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
117 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
118 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
119 2929297113 Heliophilum fasciatum MTM Isolate Rhizosphere
120 2931384279 Paenibacillus sp. DR312 Isolate Rhizosphere
121 2936340661 Gottfriedia acidiceleris 1-17 Isolate Rhizosphere
122 2938649242 Paenibacillus helianthi P26E Isolate Rhizosphere
123 2939679117 Paenibacillus sp. 4624 Isolate Rhizosphere
124 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
125 2945991243 Paenibacillus sp. B21a W2I17 Isolate Rhizosphere
126 2946053406 Paenibacillus sp. W4I10 Isolate Rhizosphere
127 2954773129 Bacillus sp. TBS-096 Isolate Rhizosphere
128 2962290636 Bacillus subtilis TLO3 Isolate Rhizosphere
129 2964375228 Anaerobacillus alkaliphilus B16-10 Isolate Rhizosphere
130 2968558590 Paenibacillus sp. P3E Isolate Rhizosphere
131 2969136845 Bacillus subtilis TLO3 Isolate Rhizosphere
132 2969141011 Bacillus velezensis MH25 Isolate Unclassified
133 2969765954 Bacillus intestinalis GM2 Isolate Rhizosphere
134 2969770375 Bacillus subtilis GM5 Isolate Rhizosphere
135 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
136 2971511577 Paenibacillus apii 7124 Isolate Rhizosphere
137 2971893375 Bacillus sp. HNA3 Isolate Rhizosphere
138 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
139 2980176882 Paenibacillus apii 7028 Isolate Rhizosphere
140 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
141 2980492589 Bacillus subtilis GQJK2 Isolate Rhizosphere
142 2988225383 Paenibacillus sp. P46E Isolate Rhizosphere
143 2996632988 Paenibacillus sp. P32E Isolate Rhizosphere
144 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
145 3001267043 Bacillus sp. FJAT-49870 Isolate Rhizosphere
146 3006826541 Bacillus haikouensis CrR16 Isolate Unclassified
147 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
148 3006879489 Bacillus atrophaeus UCMB-5137 Isolate Rhizosphere
149 3006984091 Lederbergia citrea FJAT-49754 Isolate Rhizosphere
150 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere
151 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
152 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
153 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified
154 8022630665 Bacillus sp. PW192 Isolate Rhizosphere
155 8022653035 Bacillus sp. Rc4 Isolate Unclassified
156 8051952484 Bacillus amyloliquefaciens K2 Isolate Rhizosphere
157 8052174270 Bacillus velezensis CH13 Isolate Rhizosphere
158 8054280661 Metabacillus kandeliae GX 13764 Isolate Rhizosphere
159 8054465665 Paenibacillus sonchi IIRRBNF1 Isolate Rhizosphere
160 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
161 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
162 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 36.95
Metatranscriptomes 0.99
Isolates 62.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.88
Nodule 2.46
Rhizoplane 2.46
Rhizosphere 39.41
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000211 3300003187 Bacteria 70975
2 JGI25151J46595_10001927 3300003187 Bacteria 13155
3 JGI25151J46595_10004479 3300003187 Bacteria 7388
4 JGI25151J46595_10009907 3300003187 Bacteria 4473
5 Ga0006562J51391_1004069 3300003578 Bacteria 7810
6 Ga0006562J51391_1004070 3300003578 Bacteria 6350
7 Ga0055538_1000241 3300003751 Bacteria 29788
8 Ga0055532_1000121 3300003758 Bacteria 80171
9 Ga0055532_1000562 3300003758 Bacteria 15685
10 Ga0079104_1000112 3300006946 Bacteria 116581
11 Ga0079104_1006388 3300006946 Bacteria 4470
12 Ga0105251_10022018 3300009011 Bacteria 3318
13 Ga0209784_100309 3300025224 Bacteria 25675
14 Ga0209147_100062 3300025229 Bacteria 242831
15 Ga0209147_100115 3300025229 Bacteria 143934
16 Ga0209437_100829 3300025233 Bacteria 13502
17 Ga0209676_1000761 3300025292 Bacteria 43376
18 Ga0209025_1000031 3300025294 Bacteria 422015
19 Ga0209025_1000287 3300025294 Bacteria 113923
20 Ga0209025_1001038 3300025294 Bacteria 40754
21 Ga0209025_1002681 3300025294 Bacteria 18162
22 Ga0209281_1000153 3300027111 Bacteria 166921
23 Ga0268256_1006288 3300030500 Bacteria 4450
24 Ga0307416_100055043 3300032002 Bacteria 3201
25 Ga0400490_28154 3300038726 Bacteria 12441
26 Ga0439439_0000236 3300041406 Bacteria 8657
27 Ga0439433_0000314 3300041999 Bacteria 8431
28 Ga0439449_0000241 3300042007 Bacteria 19786
29 Ga0439462_0000443 3300042015 Bacteria 8108
30 Ga0453684_0037171 3300044712 Bacteria 6688
31 Ga0495620_0020773 3300046515 Bacteria 3200
32 Ga0495672_0010267 3300047320 Bacteria 6689
33 Ga0496102_0055361 3300048905 Bacteria 3617
34 Ga0496110_0005871 3300048913 Bacteria 9658
35 Ga0496111_0049927 3300048914 Bacteria 3016
36 Ga0496116_0000804 3300048919 Bacteria 39809
37 Ga0496116_0002138 3300048919 Bacteria 21024
38 Ga0496116_0010891 3300048919 Bacteria 7578
39 Ga0496116_0017580 3300048919 Bacteria 5543
40 Ga0496116_0021634 3300048919 Bacteria 4842
41 Ga0496116_0033925 3300048919 Bacteria 3612
42 Ga0496117_0000371 3300048920 Bacteria 78424
43 Ga0496117_0026800 3300048920 Bacteria 4502
44 Ga0496118_0031237 3300048921 Bacteria 4420
45 Ga0496119_0001661 3300048922 Bacteria 26051
46 Ga0496119_0001782 3300048922 Bacteria 25108
47 Ga0496119_0021690 3300048922 Bacteria 4629
48 Ga0496119_0021958 3300048922 Bacteria 4589
49 Ga0496119_0033805 3300048922 Bacteria 3382
50 Ga0496120_0000499 3300048923 Bacteria 61341
51 Ga0496120_0000521 3300048923 Bacteria 59631
52 Ga0496120_0000864 3300048923 Bacteria 42858
53 Ga0496120_0001825 3300048923 Bacteria 23793
54 Ga0496120_0005303 3300048923 Bacteria 10334
55 Ga0496121_0063590 3300048924 Bacteria 3014
56 Ga0496122_0000044 3300048925 Bacteria 280179
57 Ga0496122_0000061 3300048925 Bacteria 243819
58 Ga0496122_0014197 3300048925 Bacteria 7720
59 Ga0496122_0031640 3300048925 Bacteria 4397
60 Ga0496122_0038921 3300048925 Bacteria 3800
61 Ga0496122_0060325 3300048925 Bacteria 2794
62 Ga0496123_0002147 3300048926 Bacteria 25200
63 Ga0496123_0007543 3300048926 Bacteria 10202
64 Ga0496123_0022813 3300048926 Bacteria 4810
65 Ga0496124_0001013 3300048927 Bacteria 44553
66 Ga0496124_0043443 3300048927 Bacteria 3864
67 Ga0496125_0000076 3300048928 Bacteria 233887
68 Ga0496125_0005782 3300048928 Bacteria 13583
69 Ga0496125_0007937 3300048928 Bacteria 11208
70 Ga0496125_0008284 3300048928 Bacteria 10919
71 Ga0496126_0000030 3300048929 Bacteria 386461
72 Ga0496126_0000145 3300048929 Bacteria 163853
73 Ga0496126_0000557 3300048929 Bacteria 71815
74 Ga0496126_0002191 3300048929 Bacteria 27149
75 Ga0496126_0002426 3300048929 Bacteria 25230
76 Ga0496126_0002485 3300048929 Bacteria 24805
77 Ga0496126_0068601 3300048929 Bacteria 3165
78 2817478599 2816332295 Bacteria 4352468
79 2511179023 2510917027 Bacteria 5287437
80 2511698295 2511231119 Bacteria 4019861
81 2512640713 2512564013 Bacteria 6286191
82 2524187652 2524023129 Bacteria 6762600
83 2540605537 2540341094 Bacteria 4061186
84 2545558500 2545555800 Bacteria 4222588
85 2550899217 2548877040 Bacteria 7507281
86 2555470836 2554235283 Bacteria 3683090
87 2556064592 2554235469 Bacteria 3590176
88 2563928653 2563366752 Bacteria 4961801
89 2571532722 2571042143 Bacteria 6986194
90 2578335128 2576861424 Bacteria 5270569
91 2578932952 2576861599 Bacteria 4217202
92 2595091915 2593339131 Bacteria 5116855
93 2601641388 2600255286 Bacteria 5390125
94 2621273345 2619619294 Bacteria 5575484
95 2631984884 2630968484 Bacteria 3876276
96 2643736656 2643221543 Bacteria 6628015
97 2644738328 2643221735 Bacteria 3676263
98 2651532338 2648501850 Bacteria 3975476
99 2672338740 2671180330 Bacteria 5521719
100 2674420835 2671180844 Bacteria 4164150
101 2686995653 2684623153 Bacteria 3878815
102 2687496913 2687453109 Bacteria 3860091
103 2695630208 2695420354 Bacteria 3922431
104 2712198914 2711768088 Bacteria 3195027
105 2717917885 2716884898 Bacteria 3928789
106 2723602180 2721755693 Bacteria 6126117
107 2730138246 2728369359 Bacteria 5621728
108 2738837998 2738541299 Bacteria 4020721
109 2739232298 2738543010 Bacteria 5583595
110 2739269371 2738543017 Bacteria 4271950
111 2745167633 2744054657 Bacteria 5016802
112 2753812867 2751185905 Bacteria 6142767
113 2757566960 2757320391 Bacteria 4746095
114 2777761977 2775507177 Bacteria 4384303
115 2777836288 2775507192 Bacteria 4622234
116 2802439617 2802428803 Bacteria 5806948
117 2808868641 2808606364 Bacteria 4465927
118 2809055286 2808606399 Bacteria 4021018
119 2812314811 2811994870 Bacteria 3776934
120 2816865335 2816332186 Bacteria 5331395
121 2817617217 2816332336 Bacteria 5207640
122 2819568378 2818991441 Bacteria 5062707
123 2819725913 2818991468 Bacteria 3723169
124 2821115214 2821111986 Bacteria 6894338
125 2823526780 2823526263 Bacteria 3765752
126 2842687591 2842682962 Bacteria 5589973
127 2849143004 2849139964 Bacteria 5613304
128 2852674180 2852673933 Bacteria 3347676
129 2857462971 2857460504 Bacteria 5194327
130 2857468752 2857465823 Bacteria 6772595
131 2857583122 2857581216 Bacteria 5522813
132 2857589004 2857586860 Bacteria 4354574
133 2857595721 2857591370 Bacteria 6569758
134 2857612131 2857609550 Bacteria 3753890
135 2860837917 2860837431 Bacteria 4202080
136 2864736953 2864733723 Bacteria 6770668
137 2865006554 2865002811 Bacteria 6333767
138 2877769086 2877768649 Bacteria 3957164
139 2880170029 2880169592 Bacteria 3900066
140 2881641595 2881636855 Bacteria 5205297
141 2881648604 2881644220 Bacteria 5302661
142 2885528785 2885526491 Bacteria 7164189
143 2889043258 2889042446 Bacteria 7618936
144 2889278256 2889276214 Bacteria 5979355
145 2897110061 2897109615 Bacteria 4009619
146 2904168362 2904162308 Bacteria 7086713
147 2904496450 2904490793 Bacteria 7046938
148 2904562550 2904560550 Bacteria 4029838
149 2904601308 2904595352 Bacteria 6124848
150 2907207759 2907202186 Bacteria 6632024
151 2908668844 2908665501 Bacteria 3678115
152 2915597388 2915597211 Bacteria 6475886
153 2915611392 2915606848 Bacteria 6032732
154 2919096437 2919093281 Bacteria 3660974
155 2919165910 2919160200 Bacteria 6929020
156 2919730080 2919726948 Bacteria 3696050
157 2925327929 2925326138 Bacteria 9652120
158 2928510823 2928510474 Bacteria 4815308
159 2929188840 2929183550 Bacteria 6377511
160 2929299719 2929297113 Bacteria 3141306
161 2931386717 2931384279 Bacteria 7299545
162 2936344445 2936340661 Bacteria 5139038
163 2938654126 2938649242 Bacteria 7118381
164 2939683456 2939679117 Bacteria 6921672
165 2939706354 2939702853 Bacteria 5139229
166 2945994672 2945991243 Bacteria 7008369
167 2946057467 2946053406 Bacteria 6978655
168 2954775726 2954773129 Bacteria 3741715
169 2962291225 2962290636 Bacteria 4072939
170 2964377394 2964375228 Bacteria 4909004
171 2968563304 2968558590 Bacteria 6956864
172 2969137336 2969136845 Bacteria 3923176
173 2969141467 2969141011 Bacteria 4118468
174 2969769828 2969765954 Bacteria 4216713
175 2969773771 2969770375 Bacteria 4271280
176 2971407723 2971403814 Bacteria 7370929
177 2971516317 2971511577 Bacteria 5404012
178 2971893833 2971893375 Bacteria 3929648
179 2980127798 2980125574 Bacteria 5567337
180 2980181712 2980176882 Bacteria 5397533
181 2980183518 2980182181 Bacteria 9454109
182 2980493085 2980492589 Bacteria 4072961
183 2988229116 2988225383 Bacteria 7221625
184 2996634403 2996632988 Bacteria 6921523
185 2996707303 2996706504 Bacteria 5757485
186 3001267129 3001267043 Bacteria 4823521
187 3006829573 3006826541 Bacteria 4678913
188 3006858920 3006858327 Bacteria 4317835
189 3006882003 3006879489 Bacteria 4064221
190 3006985963 3006984091 Bacteria 4207523
191 3006990045 3006988479 Bacteria 4767936
192 648168682 648028048 Bacteria 5394884
193 8007373864 8007371054 Bacteria 4849201
194 8007376929 8007375930 Bacteria 4080554
195 8022634143 8022630665 Bacteria 3886130
196 8022656390 8022653035 Bacteria 4035078
197 8051955900 8051952484 Bacteria 3926774
198 8052177763 8052174270 Bacteria 3881265
199 8054282791 8054280661 Bacteria 4232245
200 8054465983 8054465665 Bacteria 7323556
201 8054797220 8054795415 Bacteria 9785225
202 8055637097 8055632911 Bacteria 5283357
203 8057633517 8057632132 Bacteria 4726859
204 JGI25151J46595_10000211
205 JGI25151J46595_10001927
206 JGI25151J46595_10004479
207 JGI25151J46595_10009907
208 Ga0006562J51391_1004069
209 Ga0006562J51391_1004070
210 Ga0055538_1000241
211 Ga0055532_1000121
212 Ga0055532_1000562
213 Ga0079104_1000112
214 Ga0079104_1006388
215 Ga0105251_10022018
216 Ga0209784_100309
217 Ga0209147_100062
218 Ga0209147_100115
219 Ga0209437_100829
220 Ga0209676_1000761
221 Ga0209025_1000031
222 Ga0209025_1000287
223 Ga0209025_1001038
224 Ga0209025_1002681
225 Ga0209281_1000153
226 Ga0268256_1006288
227 Ga0307416_100055043
228 Ga0400490_28154
229 Ga0439439_0000236
230 Ga0439433_0000314
231 Ga0439449_0000241
232 Ga0439462_0000443
233 Ga0453684_0037171
234 Ga0495620_0020773
235 Ga0495672_0010267
236 Ga0496102_0055361
237 Ga0496110_0005871
238 Ga0496111_0049927
239 Ga0496116_0000804
240 Ga0496116_0002138
241 Ga0496116_0010891
242 Ga0496116_0017580
243 Ga0496116_0021634
244 Ga0496116_0033925
245 Ga0496117_0000371
246 Ga0496117_0026800
247 Ga0496118_0031237
248 Ga0496119_0001661
249 Ga0496119_0001782
250 Ga0496119_0021690
251 Ga0496119_0021958
252 Ga0496119_0033805
253 Ga0496120_0000499
254 Ga0496120_0000521
255 Ga0496120_0000864
256 Ga0496120_0001825
257 Ga0496120_0005303
258 Ga0496121_0063590
259 Ga0496122_0000044
260 Ga0496122_0000061
261 Ga0496122_0014197
262 Ga0496122_0031640
263 Ga0496122_0038921
264 Ga0496122_0060325
265 Ga0496123_0002147
266 Ga0496123_0007543
267 Ga0496123_0022813
268 Ga0496124_0001013
269 Ga0496124_0043443
270 Ga0496125_0000076
271 Ga0496125_0005782
272 Ga0496125_0007937
273 Ga0496125_0008284
274 Ga0496126_0000030
275 Ga0496126_0000145
276 Ga0496126_0000557
277 Ga0496126_0002191
278 Ga0496126_0002426
279 Ga0496126_0002485
280 Ga0496126_0068601
281 2817478599
282 2511179023
283 2511698295
284 2512640713
285 2524187652
286 2540605537
287 2545558500
288 2550899217
289 2555470836
290 2556064592
291 2563928653
292 2571532722
293 2578335128
294 2578932952
295 2595091915
296 2601641388
297 2621273345
298 2631984884
299 2643736656
300 2644738328
301 2651532338
302 2672338740
303 2674420835
304 2686995653
305 2687496913
306 2695630208
307 2712198914
308 2717917885
309 2723602180
310 2730138246
311 2738837998
312 2739232298
313 2739269371
314 2745167633
315 2753812867
316 2757566960
317 2777761977
318 2777836288
319 2802439617
320 2808868641
321 2809055286
322 2812314811
323 2816865335
324 2817617217
325 2819568378
326 2819725913
327 2821115214
328 2823526780
329 2842687591
330 2849143004
331 2852674180
332 2857462971
333 2857468752
334 2857583122
335 2857589004
336 2857595721
337 2857612131
338 2860837917
339 2864736953
340 2865006554
341 2877769086
342 2880170029
343 2881641595
344 2881648604
345 2885528785
346 2889043258
347 2889278256
348 2897110061
349 2904168362
350 2904496450
351 2904562550
352 2904601308
353 2907207759
354 2908668844
355 2915597388
356 2915611392
357 2919096437
358 2919165910
359 2919730080
360 2925327929
361 2928510823
362 2929188840
363 2929299719
364 2931386717
365 2936344445
366 2938654126
367 2939683456
368 2939706354
369 2945994672
370 2946057467
371 2954775726
372 2962291225
373 2964377394
374 2968563304
375 2969137336
376 2969141467
377 2969769828
378 2969773771
379 2971407723
380 2971516317
381 2971893833
382 2980127798
383 2980181712
384 2980183518
385 2980493085
386 2988229116
387 2996634403
388 2996707303
389 3001267129
390 3006829573
391 3006858920
392 3006882003
393 3006985963
394 3006990045
395 648168682
396 8007373864
397 8007376929
398 8022634143
399 8022656390
400 8051955900
401 8052177763
402 8054282791
403 8054465983
404 8054797220
405 8055637097
406 8057633517

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01751

Toprim

Toprim domain

17

148

0.94

PF01131

Topoisom_bac

DNA topoisomerase

164

595

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o5e-assembly1.cif.gz_A structure of e. coli topoisomerase iii in complex with an 8-base single stranded oligonucleotide. frozen in glucose ph 7.0 0.8497 4 580
1d6m-assembly1.cif.gz_A crystal structure of e. coli dna topoisomerase iii 0.8478 4 580
1i7d-assembly1.cif.gz_A noncovalent complex of e.coli dna topoisomerase iii with an 8-base single-stranded dna oligonucleotide 0.8428 4 580
2o54-assembly2.cif.gz_B structure of e. coli topoisomerase iii in complex with an 8-base single stranded oligonucleotide. frozen in glycerol at ph 7.0 0.8299 4 580
2o59-assembly1.cif.gz_A structure of e. coli topoisomerase iii in complex with an 8-base single stranded oligonucleotide. frozen in glycerol ph 8.0 0.8288 4 580
ID Description Score Start End Superfamily
af_Q2FW03_2_153_3.40.50.140 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9862 3 153 3.40.50.140
af_Q2FW03_2_153_3.40.50.140 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9735 3 153 3.40.50.140
5gveA04 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; domain 4;Topoisomerase I, domain 4 0.9065 271 399 1.10.290.10
2o19A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.8999 4 153 3.40.50.140
2o19A02 Mainly Alpha;Orthogonal Bundle;Topoisomerase I; domain 2;Topoisomerase I, domain 2 0.8953 478 580 1.10.460.10
ID Description Score Start End GO Terms
AF-A0A3C1ZLI5-F1-model_v4 deleted 0.9847 3 179
AF-A0A3D1X4I8-F1-model_v4 DNA topoisomerase III 0.9762 1 138 GO:0003677
GO:0003917
GO:0006265
GO:0006281
GO:0006310
GO:0043597
AF-A0A7Y6XLQ1-F1-model_v4 Omega-protein (Relaxing enzyme) (Swivelase) (Untwisting enzyme) 0.9753 2 181 GO:0003677
GO:0003917
GO:0004386
GO:0006265
GO:0006281
GO:0006310
GO:0043597
AF-A0A317Z4Z2-F1-model_v4 DNA topoisomerase III 0.975 26 144 GO:0003677
GO:0003917
GO:0006265
GO:0006281
GO:0006310
GO:0043597
AF-A0A353T1K4-F1-model_v4 DNA topoisomerase III 0.9731 1 122 GO:0003677
GO:0003917
GO:0006265
GO:0006281
GO:0006310
GO:0043597

Map