F311763

General Info

Members Datasets Scaffolds Average Seq Length
203 127 406 354

Family's Representative Sequence

Representative Sequence 3300049579|Ga0501043_0012773|Ga0501043_0012773_5453_6523
Length 356
Sequence VSTPWDAGAFRARIQATLDDFLDTQARRLEPLGDDAARLVAQARTSVTGGKRFRAAFCYWGHRAYLPSPDSADDAEALIRACASLELLHASALVHDDYMDASDTRRGRPSTHRVFEAQHRAAGWRGDAEQYGGAAAILLGDLLQAWADELLRGSGFPAGRTSRALELFDLTRTEVIAGQFLDVSVQARAHASVETAMTVLRYKSAKYSIERPLHIGAALAGARSLSGLSAFGLPLGEAFQLRDDLLGVYGDPATTGKPAGDDLVEGKRTVLVALALAGAGPADAATLDGALGTPLSEAEIGELRRIITDSGAQARVEAMIADLATQAVTALEQADVDPTAREVLRGLAAAATQRAL

Samples

Sample ID Description Type Environment
1 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
17 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
29 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
42 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
65 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
66 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
67 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
68 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
69 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
70 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
71 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
72 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
73 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
74 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
75 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
76 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
77 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
78 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
79 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
80 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
81 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
82 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
86 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
87 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
104 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
107 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
108 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
109 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
110 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
111 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
114 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
115 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
118 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
119 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
120 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
121 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
122 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
123 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
124 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
125 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
126 2643221641 Nocardioides sp. Root122 Isolate Unclassified
127 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 98.52
Metatranscriptomes 0.49
Isolates 0.99

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.9
Nodule 0.49
Rhizoplane 16.75
Rhizosphere 74.88
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501043_0012773 3300049579 Bacteria 6565
2 JGI24735J21928_10025078 3300002067 Bacteria 1801
3 JGI24738J21930_10008784 3300002075 Bacteria 2291
4 Ga0070658_10103224 3300005327 Bacteria 2358
5 Ga0070658_10244704 3300005327 Bacteria 1521
6 Ga0070683_100032700 3300005329 Bacteria 4738
7 Ga0070683_100115317 3300005329 Bacteria 2536
8 Ga0070660_100118030 3300005339 Bacteria 2116
9 Ga0070692_10020307 3300005345 Bacteria 3220
10 Ga0070673_100011476 3300005364 Bacteria 6047
11 Ga0070659_100068029 3300005366 Bacteria 2825
12 Ga0070659_100117946 3300005366 Bacteria 2147
13 Ga0070700_100009280 3300005441 Bacteria 5394
14 Ga0070678_100135675 3300005456 Bacteria 1962
15 Ga0068867_100043684 3300005459 Bacteria 3281
16 Ga0070685_10056174 3300005466 Bacteria 2288
17 Ga0070698_100008515 3300005471 Bacteria 11072
18 Ga0070684_100008351 3300005535 Bacteria 8087
19 Ga0070684_100014866 3300005535 Bacteria 6317
20 Ga0070672_100010121 3300005543 Bacteria 6531
21 Ga0070686_100094671 3300005544 Bacteria 2005
22 Ga0068857_100023775 3300005577 Bacteria 5395
23 Ga0068854_100042435 3300005578 Bacteria 3220
24 Ga0068856_100135573 3300005614 Bacteria 2467
25 Ga0070702_100121870 3300005615 Bacteria 1634
26 Ga0068861_100055805 3300005719 Bacteria 3013
27 Ga0068858_100093910 3300005842 Bacteria 2793
28 Ga0068860_100016647 3300005843 Bacteria 7172
29 Ga0075365_10015092 3300006038 Bacteria 4664
30 Ga0075365_10074104 3300006038 Bacteria 2296
31 Ga0075365_10196703 3300006038 Bacteria 1412
32 Ga0075365_10219612 3300006038 Bacteria 1333
33 Ga0075363_100014509 3300006048 Bacteria 3852
34 Ga0075367_10021965 3300006178 Bacteria 3573
35 Ga0075367_10022074 3300006178 Bacteria 3565
36 Ga0075370_10006065 3300006353 Bacteria 6057
37 Ga0068865_100024181 3300006881 Bacteria 3983
38 Ga0111539_10146901 3300009094 Bacteria 2761
39 Ga0105245_10016605 3300009098 Bacteria 6425
40 Ga0105245_10041889 3300009098 Bacteria 4083
41 Ga0105243_10019360 3300009148 Bacteria 5161
42 Ga0105242_10149433 3300009176 Bacteria 2036
43 Ga0105239_10001535 3300010375 Bacteria 30515
44 Ga0105239_10139983 3300010375 Bacteria 2696
45 Ga0157369_10180093 3300013105 Bacteria 2224
46 Ga0163162_10041208 3300013306 Bacteria 4620
47 Ga0157372_10006191 3300013307 Bacteria 12719
48 Ga0157372_10119073 3300013307 Bacteria 3031
49 Ga0163163_10225813 3300014325 Bacteria 1922
50 Ga0163163_10296402 3300014325 Bacteria 1669
51 Ga0157377_10031250 3300014745 Bacteria 2892
52 Ga0163161_10021036 3300017792 Bacteria 4584
53 Ga0206356_11130511 3300020070 Bacteria 1244
54 Ga0207647_10046727 3300025904 Bacteria 2696
55 Ga0207643_10032274 3300025908 Bacteria 2924
56 Ga0207671_10069929 3300025914 Bacteria 2616
57 Ga0207662_10147616 3300025918 Bacteria 1494
58 Ga0207657_10061128 3300025919 Bacteria 3231
59 Ga0207657_10165312 3300025919 Bacteria 1795
60 Ga0207652_10074997 3300025921 Bacteria 2946
61 Ga0207687_10051413 3300025927 Bacteria 2873
62 Ga0207690_10064365 3300025932 Bacteria 2504
63 Ga0207690_10083025 3300025932 Bacteria 2242
64 Ga0207669_10026074 3300025937 Bacteria 3172
65 Ga0207704_10041146 3300025938 Bacteria 2707
66 Ga0207691_10001678 3300025940 Bacteria 21870
67 Ga0207661_10205329 3300025944 Bacteria 1734
68 Ga0207651_10105398 3300025960 Bacteria 2103
69 Ga0207640_10059245 3300025981 Bacteria 2526
70 Ga0207703_10203789 3300026035 Bacteria 1759
71 Ga0207708_10001350 3300026075 Bacteria 18416
72 Ga0207708_10002059 3300026075 Bacteria 14814
73 Ga0207648_10027107 3300026089 Bacteria 5089
74 Ga0207674_10066597 3300026116 Bacteria 3627
75 Ga0207683_10021489 3300026121 Bacteria 5526
76 Ga0207698_10250166 3300026142 Bacteria 1621
77 Ga0209813_10056612 3300027866 Bacteria 1241
78 Ga0268266_10006059 3300028379 Bacteria 11144
79 Ga0307409_100133214 3300031995 Bacteria 2128
80 Ga0307409_100483227 3300031995 Bacteria 1202
81 Ga0307411_10102844 3300032005 Bacteria 2025
82 Ga0436364_1522193 3300037853 Bacteria 3307
83 Ga0395901_0336768 3300038443 Bacteria 1559
84 Ga0439434_0002196 3300042435 Bacteria 5662
85 Ga0466963_0099183 3300044694 Bacteria 1992
86 Ga0466964_0059534 3300044706 Bacteria 1586
87 Ga0466964_0082446 3300044706 Bacteria 1383
88 Ga0466960_0020309 3300044901 Bacteria 2940
89 Ga0466960_0021028 3300044901 Bacteria 2900
90 Ga0466958_0126805 3300045836 Bacteria 1600
91 Ga0466967_0238859 3300045976 Bacteria 1732
92 Ga0466967_0373180 3300045976 Bacteria 1384
93 Ga0495603_0016433 3300046455 Bacteria 4477
94 Ga0495629_0204389 3300046459 Bacteria 1365
95 Ga0496101_0011123 3300048904 Bacteria 5964
96 Ga0496102_0002473 3300048905 Bacteria 15773
97 Ga0496103_0017134 3300048906 Bacteria 4332
98 Ga0496104_0062696 3300048907 Bacteria 3525
99 Ga0496105_0001683 3300048908 Bacteria 15777
100 Ga0496106_0128171 3300048909 Bacteria 1988
101 Ga0496106_0234690 3300048909 Bacteria 1465
102 Ga0496108_0012557 3300048911 Bacteria 6900
103 Ga0496108_0274251 3300048911 Bacteria 1468
104 Ga0496108_0333748 3300048911 Bacteria 1322
105 Ga0496108_0532725 3300048911 Bacteria 1025
106 Ga0496109_0012605 3300048912 Bacteria 7300
107 Ga0496109_0016439 3300048912 Bacteria 6470
108 Ga0496109_0018061 3300048912 Bacteria 6192
109 Ga0496109_0024269 3300048912 Bacteria 5389
110 Ga0496109_0028280 3300048912 Bacteria 5012
111 Ga0496109_0093826 3300048912 Bacteria 2778
112 Ga0496109_0176320 3300048912 Bacteria 2006
113 Ga0496109_0238541 3300048912 Bacteria 1711
114 Ga0496109_0432205 3300048912 Bacteria 1244
115 Ga0496110_0026751 3300048913 Bacteria 4940
116 Ga0496110_0077089 3300048913 Bacteria 2965
117 Ga0496111_0037955 3300048914 Bacteria 3449
118 Ga0496111_0125932 3300048914 Bacteria 1893
119 Ga0496111_0257660 3300048914 Bacteria 1294
120 Ga0496112_0128412 3300048915 Bacteria 2506
121 Ga0496113_0045508 3300048916 Bacteria 3255
122 Ga0496113_0091499 3300048916 Bacteria 2345
123 Ga0496113_0374933 3300048916 Bacteria 1142
124 Ga0496114_0001019 3300048917 Bacteria 21049
125 Ga0496114_0035157 3300048917 Bacteria 4136
126 Ga0496114_0116468 3300048917 Bacteria 2294
127 Ga0496114_0128538 3300048917 Bacteria 2186
128 Ga0496114_0222042 3300048917 Bacteria 1659
129 Ga0501031_0010333 3300049568 Bacteria 6082
130 Ga0501031_0026219 3300049568 Bacteria 3801
131 Ga0501031_0038033 3300049568 Bacteria 3141
132 Ga0501032_0089619 3300049569 Bacteria 2042
133 Ga0501033_0006821 3300049570 Bacteria 8914
134 Ga0501033_0033331 3300049570 Bacteria 3867
135 Ga0501034_0008043 3300049571 Bacteria 11190
136 Ga0501034_0151901 3300049571 Bacteria 2291
137 Ga0501036_0003233 3300049572 Bacteria 12988
138 Ga0501036_0005566 3300049572 Bacteria 10219
139 Ga0501036_0216345 3300049572 Bacteria 1609
140 Ga0501037_0021491 3300049573 Bacteria 4770
141 Ga0501037_0060178 3300049573 Bacteria 2770
142 Ga0501037_0085507 3300049573 Bacteria 2283
143 Ga0501038_0003124 3300049574 Bacteria 15442
144 Ga0501038_0044586 3300049574 Bacteria 3851
145 Ga0501038_0226725 3300049574 Bacteria 1489
146 Ga0501039_0053930 3300049575 Bacteria 3112
147 Ga0501039_0195023 3300049575 Bacteria 1592
148 Ga0501040_0054016 3300049576 Bacteria 2753
149 Ga0501040_0187052 3300049576 Bacteria 1469
150 Ga0501041_0031583 3300049577 Bacteria 3201
151 Ga0501042_0001974 3300049578 Bacteria 12359
152 Ga0501043_0032308 3300049579 Bacteria 4115
153 Ga0501043_0072705 3300049579 Bacteria 2701
154 Ga0501046_0000793 3300049580 Bacteria 30623
155 Ga0501046_0002072 3300049580 Bacteria 19030
156 Ga0501046_0077570 3300049580 Bacteria 2572
157 Ga0501047_0044931 3300049581 Bacteria 4269
158 Ga0501047_0179843 3300049581 Bacteria 1981
159 Ga0501048_0029200 3300049582 Bacteria 4000
160 Ga0501048_0073038 3300049582 Bacteria 2421
161 Ga0501067_0000872 3300049583 Bacteria 16206
162 Ga0501067_0015201 3300049583 Bacteria 4261
163 Ga0501067_0103195 3300049583 Bacteria 1584
164 Ga0501069_0070626 3300049585 Bacteria 1956
165 Ga0501069_0117220 3300049585 Bacteria 1519
166 Ga0501070_0003335 3300049586 Bacteria 13946
167 Ga0501070_0004263 3300049586 Bacteria 12295
168 Ga0501070_0016827 3300049586 Bacteria 6138
169 Ga0501070_0138264 3300049586 Bacteria 2011
170 Ga0501071_0019853 3300049587 Bacteria 4666
171 Ga0501072_0180762 3300049588 Bacteria 1682
172 Ga0501073_0001612 3300049589 Bacteria 16717
173 Ga0501073_0046014 3300049589 Bacteria 3071
174 Ga0501073_0115057 3300049589 Bacteria 1864
175 Ga0501074_0004691 3300049590 Bacteria 9790
176 Ga0501074_0005848 3300049590 Bacteria 8872
177 Ga0501074_0057496 3300049590 Bacteria 2802
178 Ga0501074_0106464 3300049590 Bacteria 2008
179 Ga0501076_0085158 3300049592 Bacteria 2539
180 Ga0501079_0030807 3300049741 Bacteria 4122
181 Ga0501079_0331242 3300049741 Bacteria 1192
182 Ga0501080_0007387 3300049742 Bacteria 9916
183 Ga0501080_0030600 3300049742 Bacteria 5017
184 Ga0501080_0048401 3300049742 Bacteria 3957
185 Ga0501080_0277144 3300049742 Bacteria 1525
186 Ga0501081_0079388 3300049743 Bacteria 2295
187 Ga0501083_0012842 3300049744 Bacteria 5857
188 Ga0501035_0008444 3300049822 Bacteria 9592
189 Ga0501044_0035935 3300049823 Bacteria 5185
190 Ga0501045_0011283 3300049824 Bacteria 6271
191 Ga0501045_0168614 3300049824 Bacteria 1631
192 nmdc:mga00v17_117997_c1 3300050491 Bacteria 1688
193 nmdc:mga0yw44_146321_c1 3300050492 Bacteria 1539
194 nmdc:mga0yw44_4117_c1 3300050492 Bacteria 6173
195 nmdc:mga07m45_66842_c1 3300050496 Bacteria 2043
196 nmdc:mga08y16_131369_c1 3300050511 Bacteria 2604
197 Ga0500644_0011962 3300053088 Bacteria 2387
198 Ga0501084_0085283 3300054114 Bacteria 2651
199 Ga0501084_0121678 3300054114 Bacteria 2194
200 Ga0501082_0062148 3300060353 Bacteria 3214
201 Ga0530510_0023467 3300061734 Bacteria 4396
202 2644228850 2643221641 Bacteria 4490190
203 8054612709 8054609563 Bacteria 5170090
204 Ga0501043_0012773
205 JGI24735J21928_10025078
206 JGI24738J21930_10008784
207 Ga0070658_10103224
208 Ga0070658_10244704
209 Ga0070683_100032700
210 Ga0070683_100115317
211 Ga0070660_100118030
212 Ga0070692_10020307
213 Ga0070673_100011476
214 Ga0070659_100068029
215 Ga0070659_100117946
216 Ga0070700_100009280
217 Ga0070678_100135675
218 Ga0068867_100043684
219 Ga0070685_10056174
220 Ga0070698_100008515
221 Ga0070684_100008351
222 Ga0070684_100014866
223 Ga0070672_100010121
224 Ga0070686_100094671
225 Ga0068857_100023775
226 Ga0068854_100042435
227 Ga0068856_100135573
228 Ga0070702_100121870
229 Ga0068861_100055805
230 Ga0068858_100093910
231 Ga0068860_100016647
232 Ga0075365_10015092
233 Ga0075365_10074104
234 Ga0075365_10196703
235 Ga0075365_10219612
236 Ga0075363_100014509
237 Ga0075367_10021965
238 Ga0075367_10022074
239 Ga0075370_10006065
240 Ga0068865_100024181
241 Ga0111539_10146901
242 Ga0105245_10016605
243 Ga0105245_10041889
244 Ga0105243_10019360
245 Ga0105242_10149433
246 Ga0105239_10001535
247 Ga0105239_10139983
248 Ga0157369_10180093
249 Ga0163162_10041208
250 Ga0157372_10006191
251 Ga0157372_10119073
252 Ga0163163_10225813
253 Ga0163163_10296402
254 Ga0157377_10031250
255 Ga0163161_10021036
256 Ga0206356_11130511
257 Ga0207647_10046727
258 Ga0207643_10032274
259 Ga0207671_10069929
260 Ga0207662_10147616
261 Ga0207657_10061128
262 Ga0207657_10165312
263 Ga0207652_10074997
264 Ga0207687_10051413
265 Ga0207690_10064365
266 Ga0207690_10083025
267 Ga0207669_10026074
268 Ga0207704_10041146
269 Ga0207691_10001678
270 Ga0207661_10205329
271 Ga0207651_10105398
272 Ga0207640_10059245
273 Ga0207703_10203789
274 Ga0207708_10001350
275 Ga0207708_10002059
276 Ga0207648_10027107
277 Ga0207674_10066597
278 Ga0207683_10021489
279 Ga0207698_10250166
280 Ga0209813_10056612
281 Ga0268266_10006059
282 Ga0307409_100133214
283 Ga0307409_100483227
284 Ga0307411_10102844
285 Ga0436364_1522193
286 Ga0395901_0336768
287 Ga0439434_0002196
288 Ga0466963_0099183
289 Ga0466964_0059534
290 Ga0466964_0082446
291 Ga0466960_0020309
292 Ga0466960_0021028
293 Ga0466958_0126805
294 Ga0466967_0238859
295 Ga0466967_0373180
296 Ga0495603_0016433
297 Ga0495629_0204389
298 Ga0496101_0011123
299 Ga0496102_0002473
300 Ga0496103_0017134
301 Ga0496104_0062696
302 Ga0496105_0001683
303 Ga0496106_0128171
304 Ga0496106_0234690
305 Ga0496108_0012557
306 Ga0496108_0274251
307 Ga0496108_0333748
308 Ga0496108_0532725
309 Ga0496109_0012605
310 Ga0496109_0016439
311 Ga0496109_0018061
312 Ga0496109_0024269
313 Ga0496109_0028280
314 Ga0496109_0093826
315 Ga0496109_0176320
316 Ga0496109_0238541
317 Ga0496109_0432205
318 Ga0496110_0026751
319 Ga0496110_0077089
320 Ga0496111_0037955
321 Ga0496111_0125932
322 Ga0496111_0257660
323 Ga0496112_0128412
324 Ga0496113_0045508
325 Ga0496113_0091499
326 Ga0496113_0374933
327 Ga0496114_0001019
328 Ga0496114_0035157
329 Ga0496114_0116468
330 Ga0496114_0128538
331 Ga0496114_0222042
332 Ga0501031_0010333
333 Ga0501031_0026219
334 Ga0501031_0038033
335 Ga0501032_0089619
336 Ga0501033_0006821
337 Ga0501033_0033331
338 Ga0501034_0008043
339 Ga0501034_0151901
340 Ga0501036_0003233
341 Ga0501036_0005566
342 Ga0501036_0216345
343 Ga0501037_0021491
344 Ga0501037_0060178
345 Ga0501037_0085507
346 Ga0501038_0003124
347 Ga0501038_0044586
348 Ga0501038_0226725
349 Ga0501039_0053930
350 Ga0501039_0195023
351 Ga0501040_0054016
352 Ga0501040_0187052
353 Ga0501041_0031583
354 Ga0501042_0001974
355 Ga0501043_0032308
356 Ga0501043_0072705
357 Ga0501046_0000793
358 Ga0501046_0002072
359 Ga0501046_0077570
360 Ga0501047_0044931
361 Ga0501047_0179843
362 Ga0501048_0029200
363 Ga0501048_0073038
364 Ga0501067_0000872
365 Ga0501067_0015201
366 Ga0501067_0103195
367 Ga0501069_0070626
368 Ga0501069_0117220
369 Ga0501070_0003335
370 Ga0501070_0004263
371 Ga0501070_0016827
372 Ga0501070_0138264
373 Ga0501071_0019853
374 Ga0501072_0180762
375 Ga0501073_0001612
376 Ga0501073_0046014
377 Ga0501073_0115057
378 Ga0501074_0004691
379 Ga0501074_0005848
380 Ga0501074_0057496
381 Ga0501074_0106464
382 Ga0501076_0085158
383 Ga0501079_0030807
384 Ga0501079_0331242
385 Ga0501080_0007387
386 Ga0501080_0030600
387 Ga0501080_0048401
388 Ga0501080_0277144
389 Ga0501081_0079388
390 Ga0501083_0012842
391 Ga0501035_0008444
392 Ga0501044_0035935
393 Ga0501045_0011283
394 Ga0501045_0168614
395 nmdc:mga00v17_117997_c1
396 nmdc:mga0yw44_146321_c1
397 nmdc:mga0yw44_4117_c1
398 nmdc:mga07m45_66842_c1
399 nmdc:mga08y16_131369_c1
400 Ga0500644_0011962
401 Ga0501084_0085283
402 Ga0501084_0121678
403 Ga0501082_0062148
404 Ga0530510_0023467
405 2644228850
406 8054612709

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

37

308

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lk5-assembly1.cif.gz_A-2 crystal structure of putative geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum 0.9552 9 341
3qqv-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium 0.9522 8 341
8f8k-assembly1.cif.gz_A the structure of rv2173 from m. tuberculosis with ipp bound 0.9391 13 341
3qqv-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthase from corynebacterium glutamicum complexed with isoprenyl diphosphate and magnesium 0.9099 8 341
5jfq-assembly1.cif.gz_B geranylgeranyl pyrophosphate synthetase from archaeon geoglobus acetivorans 0.8957 10 340
ID Description Score Start End Superfamily
3qqvA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9422 8 341 1.10.600.10
af_O53507_1_351_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.939 14 344 1.10.600.10
af_Q58270_13_326_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9117 8 337 1.10.600.10
3qqvA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9004 8 341 1.10.600.10
af_O53507_1_351_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.8897 14 344 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A6G7XVJ9-F1-model_v4 Polyprenyl synthetase family protein 0.9863 46 341 GO:0004659
GO:0008299
AF-A0A6J7SU55-F1-model_v4 Unannotated protein 0.9811 154 341 GO:0004659
GO:0008299
AF-A0A6I2Z7C1-F1-model_v4 deleted 0.98 90 340
AF-A0A6V8K1N4-F1-model_v4 Geranylgeranyl pyrophosphate synthase 0.9785 127 340 GO:0004659
GO:0008299
AF-A0A6L6EY77-F1-model_v4 Polyprenyl synthetase family protein 0.9769 8 341 GO:0004659
GO:0008299

Map