F309987

General Info

Members Datasets Scaffolds Average Seq Length
202 111 404 409

Family's Representative Sequence

Representative Sequence 3300026116|Ga0207674_10119140|Ga0207674_101191402
Length 456
Sequence VSGGNAGRPFLELGARELEAVISMPDMPSRKGGEQRVVVGVRGRHDDRARSGGSPDGVLRRGQTLDAAAAQVRGLSPPDRGLAVAIAGEALRRIPDLDALIDSATRQRLPDDSKPRMVLRLALAQKVGLGTPDHALVATALPLVDGGPRRLVHGVLGTLLRRGVPPMDAPSLPAGVEERWRAAWGETVVEAARRQIAKRPPLDLTFAEDSEAQTYAGQHGGVSLAPKHVRLESSAVAELAGYDSGRWWVQDVAASLPARLIPEDAADVLDLCAAPGGKTMQLAAAGHRVTAVDASASRLARLRENLDRTHLDAVLIQADALTWEPNREFDAILLDAPCSATGTFRRHPEVLYRARASVIAENAALQLRLLGRAAKWLKAGGSLVYSVCSLEPEEGERAVADFIAGNPDFRIDAPGEGKLPDFVPVSSDGWVRILPGLLEADSGLDGFFMARLVRTR

Samples

Sample ID Description Type Environment
1 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300001977 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
33 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
34 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
49 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
76 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
77 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
82 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
83 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
84 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
85 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
86 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
87 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
88 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
89 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
90 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
91 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
92 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
93 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
94 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
95 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
96 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
99 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
100 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
101 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
102 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
103 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
104 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
105 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
106 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
107 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
111 3300049767 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 6.93
Rhizosphere 93.07
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207674_10119140 3300026116 Bacteria 2609
2 JGI24746J21847_1002299 3300001977 Bacteria 3056
3 Ga0070658_10004136 3300005327 Bacteria 11882
4 Ga0070658_10015184 3300005327 Bacteria 6161
5 Ga0070658_10073597 3300005327 Bacteria 2801
6 Ga0070658_10112924 3300005327 Bacteria 2252
7 Ga0070676_10057902 3300005328 Bacteria 2295
8 Ga0070670_100022250 3300005331 Bacteria 5456
9 Ga0070670_100049231 3300005331 Bacteria 3623
10 Ga0070666_10000207 3300005335 Bacteria 40445
11 Ga0070680_100001660 3300005336 Bacteria 16265
12 Ga0070680_100003296 3300005336 Bacteria 12049
13 Ga0070680_100147295 3300005336 Bacteria 1976
14 Ga0068868_100002329 3300005338 Bacteria 13141
15 Ga0070660_100181588 3300005339 Bacteria 1703
16 Ga0070661_100107636 3300005344 Bacteria 2079
17 Ga0070668_100031154 3300005347 Bacteria 4057
18 Ga0070671_100004275 3300005355 Bacteria 11299
19 Ga0070674_100027604 3300005356 Bacteria 3721
20 Ga0070674_100151970 3300005356 Bacteria 1748
21 Ga0070673_100325105 3300005364 Bacteria 1359
22 Ga0070659_100036293 3300005366 Bacteria 3842
23 Ga0070659_100139568 3300005366 Bacteria 1973
24 Ga0070714_100013819 3300005435 Bacteria 6473
25 Ga0070714_100047241 3300005435 Bacteria 3656
26 Ga0070714_100057085 3300005435 Bacteria 3340
27 Ga0070678_100003577 3300005456 Bacteria 8672
28 Ga0068867_100008252 3300005459 Bacteria 7355
29 Ga0070684_100292178 3300005535 Bacteria 1494
30 Ga0070672_100043886 3300005543 Bacteria 3451
31 Ga0070665_100000590 3300005548 Bacteria 50563
32 Ga0070665_100090512 3300005548 Bacteria 3065
33 Ga0068855_100476803 3300005563 Bacteria 1359
34 Ga0070664_100271395 3300005564 Bacteria 1528
35 Ga0068857_100143903 3300005577 Bacteria 2156
36 Ga0068854_100026639 3300005578 Bacteria 3975
37 Ga0068859_100047464 3300005617 Bacteria 4315
38 Ga0068861_100024965 3300005719 Bacteria 4328
39 Ga0068863_100057316 3300005841 Bacteria 3687
40 Ga0068858_100011318 3300005842 Bacteria 8426
41 Ga0068862_100002421 3300005844 Bacteria 16567
42 Ga0068862_100041237 3300005844 Bacteria 3927
43 Ga0068862_100041737 3300005844 Bacteria 3905
44 Ga0068862_100065909 3300005844 Bacteria 3120
45 Ga0081539_10006734 3300005985 Bacteria 10812
46 Ga0070712_100251359 3300006175 Bacteria 1413
47 Ga0097621_100212425 3300006237 Bacteria 1683
48 Ga0068865_100035963 3300006881 Bacteria 3335
49 Ga0097620_100047466 3300006931 Bacteria 4315
50 Ga0105245_10024733 3300009098 Bacteria 5275
51 Ga0105245_10113214 3300009098 Bacteria 2526
52 Ga0105243_10133398 3300009148 Bacteria 2110
53 Ga0105248_10021589 3300009177 Bacteria 7131
54 Ga0105248_10078570 3300009177 Bacteria 3709
55 Ga0105239_10149645 3300010375 Bacteria 2605
56 Ga0157373_10106004 3300013100 Bacteria 1976
57 Ga0157371_10020876 3300013102 Bacteria 4817
58 Ga0157370_10090745 3300013104 Bacteria 2869
59 Ga0157370_10109390 3300013104 Bacteria 2584
60 Ga0157369_10061066 3300013105 Bacteria 4064
61 Ga0157369_10394604 3300013105 Bacteria 1436
62 Ga0157374_10145477 3300013296 Bacteria 2302
63 Ga0163162_10048646 3300013306 Bacteria 4249
64 Ga0157380_10011746 3300014326 Bacteria 6332
65 Ga0157376_10018087 3300014969 Bacteria 5392
66 Ga0163161_10130062 3300017792 Bacteria 1898
67 Ga0207697_10004559 3300025315 Bacteria 6598
68 Ga0207680_10001724 3300025903 Bacteria 10308
69 Ga0207680_10052783 3300025903 Bacteria 2438
70 Ga0207680_10170065 3300025903 Bacteria 1467
71 Ga0207647_10005668 3300025904 Bacteria 9119
72 Ga0207647_10054219 3300025904 Bacteria 2467
73 Ga0207705_10022056 3300025909 Bacteria 4544
74 Ga0207705_10059095 3300025909 Bacteria 2766
75 Ga0207693_10019887 3300025915 Bacteria 5340
76 Ga0207660_10002059 3300025917 Bacteria 13360
77 Ga0207657_10110918 3300025919 Bacteria 2266
78 Ga0207657_10131250 3300025919 Bacteria 2053
79 Ga0207681_10050878 3300025923 Bacteria 2805
80 Ga0207644_10016091 3300025931 Bacteria 5030
81 Ga0207644_10065312 3300025931 Bacteria 2646
82 Ga0207644_10089871 3300025931 Bacteria 2287
83 Ga0207706_10003671 3300025933 Bacteria 14655
84 Ga0207706_10131247 3300025933 Bacteria 2204
85 Ga0207669_10063453 3300025937 Bacteria 2281
86 Ga0207669_10076464 3300025937 Bacteria 2125
87 Ga0207669_10133662 3300025937 Bacteria 1709
88 Ga0207691_10023345 3300025940 Bacteria 5822
89 Ga0207711_10000639 3300025941 Bacteria 35104
90 Ga0207711_10013863 3300025941 Bacteria 6695
91 Ga0207667_10180280 3300025949 Bacteria 2169
92 Ga0207667_10404745 3300025949 Bacteria 1389
93 Ga0207651_10013199 3300025960 Bacteria 4715
94 Ga0207651_10015189 3300025960 Bacteria 4468
95 Ga0207658_10001050 3300025986 Bacteria 22409
96 Ga0207677_10000837 3300026023 Bacteria 17570
97 Ga0207703_10002825 3300026035 Bacteria 14822
98 Ga0207678_10040674 3300026067 Bacteria 4030
99 Ga0207641_10045277 3300026088 Bacteria 3704
100 Ga0207676_10202569 3300026095 Bacteria 1755
101 Ga0207674_10000655 3300026116 Bacteria 45111
102 Ga0207675_100039143 3300026118 Bacteria 4425
103 Ga0207683_10029369 3300026121 Bacteria 4760
104 Ga0268266_10000200 3300028379 Bacteria 104456
105 Ga0268266_10050296 3300028379 Bacteria 3575
106 Ga0268265_10031004 3300028380 Bacteria 3857
107 Ga0268265_10115207 3300028380 Bacteria 2203
108 Ga0307408_100076143 3300031548 Bacteria 2495
109 Ga0307408_100128308 3300031548 Bacteria 1975
110 Ga0307405_10008972 3300031731 Bacteria 5103
111 Ga0307405_10122612 3300031731 Bacteria 1781
112 Ga0307413_10002717 3300031824 Bacteria 7258
113 Ga0307413_10003911 3300031824 Bacteria 6375
114 Ga0307413_10004047 3300031824 Bacteria 6308
115 Ga0307413_10064478 3300031824 Bacteria 2277
116 Ga0307410_10017511 3300031852 Bacteria 4305
117 Ga0307406_10020141 3300031901 Bacteria 3923
118 Ga0307406_10032431 3300031901 Bacteria 3189
119 Ga0307406_10040837 3300031901 Bacteria 2887
120 Ga0307406_10056319 3300031901 Bacteria 2517
121 Ga0307406_10062031 3300031901 Bacteria 2417
122 Ga0307406_10188653 3300031901 Bacteria 1507
123 Ga0307407_10002378 3300031903 Bacteria 7339
124 Ga0307407_10003310 3300031903 Bacteria 6578
125 Ga0307407_10027301 3300031903 Bacteria 3035
126 Ga0307407_10049829 3300031903 Bacteria 2392
127 Ga0307412_10012637 3300031911 Bacteria 4927
128 Ga0307412_10186060 3300031911 Bacteria 1566
129 Ga0307409_100036568 3300031995 Bacteria 3611
130 Ga0307409_100041893 3300031995 Bacteria 3424
131 Ga0307409_100191798 3300031995 Bacteria 1819
132 Ga0307416_100008527 3300032002 Bacteria 6624
133 Ga0307416_100288301 3300032002 Bacteria 1623
134 Ga0307416_100347923 3300032002 Bacteria 1498
135 Ga0307414_10001976 3300032004 Bacteria 10626
136 Ga0307414_10004240 3300032004 Bacteria 7769
137 Ga0307414_10007249 3300032004 Bacteria 6228
138 Ga0307414_10048664 3300032004 Bacteria 2926
139 Ga0307414_10053355 3300032004 Bacteria 2819
140 Ga0307414_10078975 3300032004 Bacteria 2400
141 Ga0307414_10152616 3300032004 Bacteria 1824
142 Ga0307411_10000651 3300032005 Bacteria 12637
143 Ga0307411_10002827 3300032005 Bacteria 7829
144 Ga0307411_10070747 3300032005 Bacteria 2362
145 Ga0307415_100019157 3300032126 Bacteria 4149
146 Ga0307415_100031073 3300032126 Bacteria 3436
147 Ga0307415_100031340 3300032126 Bacteria 3424
148 Ga0373954_0012702 3300035118 Bacteria 3747
149 Ga0373955_0015651 3300035172 Bacteria 3719
150 Ga0373933_0005237 3300035724 Bacteria 7075
151 Ga0395900_0000731 3300037418 Bacteria 43691
152 Ga0395900_0001094 3300037418 Bacteria 34490
153 Ga0395900_0033270 3300037418 Bacteria 5307
154 Ga0395900_0034968 3300037418 Bacteria 5175
155 Ga0395900_0036975 3300037418 Bacteria 5033
156 Ga0395900_0055243 3300037418 Bacteria 4089
157 Ga0395900_0057611 3300037418 Bacteria 4000
158 Ga0395900_0140163 3300037418 Bacteria 2476
159 Ga0395900_0178917 3300037418 Bacteria 2156
160 Ga0395898_0361817 3300037466 Bacteria 1383
161 Ga0395905_0000232 3300037471 Bacteria 84233
162 Ga0395905_0000383 3300037471 Bacteria 63049
163 Ga0395905_0000897 3300037471 Bacteria 38814
164 Ga0395905_0003327 3300037471 Bacteria 17251
165 Ga0395905_0023418 3300037471 Bacteria 5835
166 Ga0395905_0028518 3300037471 Bacteria 5262
167 Ga0395905_0060535 3300037471 Bacteria 3540
168 Ga0395905_0063092 3300037471 Bacteria 3466
169 Ga0395905_0066595 3300037471 Bacteria 3373
170 Ga0395901_0000086 3300038443 Bacteria 125359
171 Ga0395901_0000677 3300038443 Bacteria 39201
172 Ga0395901_0018036 3300038443 Bacteria 7204
173 Ga0395901_0034177 3300038443 Bacteria 5250
174 Ga0395901_0035499 3300038443 Bacteria 5151
175 Ga0395901_0072461 3300038443 Bacteria 3591
176 Ga0395901_0078149 3300038443 Bacteria 3455
177 Ga0395901_0086148 3300038443 Bacteria 3284
178 Ga0395901_0195078 3300038443 Bacteria 2123
179 Ga0439458_0000052 3300042157 Bacteria 19610
180 Ga0466971_0052694 3300044719 Bacteria 1833
181 Ga0466960_0038273 3300044901 Bacteria 2254
182 Ga0466967_0038638 3300045976 Bacteria 4095
183 Ga0466967_0227072 3300045976 Bacteria 1776
184 Ga0495643_0098833 3300046522 Bacteria 1498
185 Ga0495677_0002552 3300047445 Bacteria 7121
186 Ga0495602_0090463 3300048088 Bacteria 2542
187 Ga0496100_0193895 3300048903 Bacteria 1476
188 Ga0496101_0016150 3300048904 Bacteria 5040
189 Ga0496102_0285560 3300048905 Bacteria 1555
190 Ga0496103_0059838 3300048906 Bacteria 2367
191 Ga0496103_0064165 3300048906 Bacteria 2289
192 Ga0496106_0035350 3300048909 Bacteria 3736
193 Ga0496107_0037298 3300048910 Bacteria 3487
194 Ga0496109_0058429 3300048912 Bacteria 3522
195 Ga0496109_0113291 3300048912 Bacteria 2523
196 Ga0496111_0125761 3300048914 Bacteria 1895
197 Ga0496112_0011048 3300048915 Bacteria 8227
198 Ga0496112_0059034 3300048915 Bacteria 3779
199 Ga0496112_0160450 3300048915 Bacteria 2215
200 Ga0496113_0016929 3300048916 Bacteria 5046
201 Ga0501225_0005814 3300049705 Bacteria 3612
202 Ga0501270_001113 3300049767 Bacteria 2490
203 Ga0207674_10119140
204 JGI24746J21847_1002299
205 Ga0070658_10004136
206 Ga0070658_10015184
207 Ga0070658_10073597
208 Ga0070658_10112924
209 Ga0070676_10057902
210 Ga0070670_100022250
211 Ga0070670_100049231
212 Ga0070666_10000207
213 Ga0070680_100001660
214 Ga0070680_100003296
215 Ga0070680_100147295
216 Ga0068868_100002329
217 Ga0070660_100181588
218 Ga0070661_100107636
219 Ga0070668_100031154
220 Ga0070671_100004275
221 Ga0070674_100027604
222 Ga0070674_100151970
223 Ga0070673_100325105
224 Ga0070659_100036293
225 Ga0070659_100139568
226 Ga0070714_100013819
227 Ga0070714_100047241
228 Ga0070714_100057085
229 Ga0070678_100003577
230 Ga0068867_100008252
231 Ga0070684_100292178
232 Ga0070672_100043886
233 Ga0070665_100000590
234 Ga0070665_100090512
235 Ga0068855_100476803
236 Ga0070664_100271395
237 Ga0068857_100143903
238 Ga0068854_100026639
239 Ga0068859_100047464
240 Ga0068861_100024965
241 Ga0068863_100057316
242 Ga0068858_100011318
243 Ga0068862_100002421
244 Ga0068862_100041237
245 Ga0068862_100041737
246 Ga0068862_100065909
247 Ga0081539_10006734
248 Ga0070712_100251359
249 Ga0097621_100212425
250 Ga0068865_100035963
251 Ga0097620_100047466
252 Ga0105245_10024733
253 Ga0105245_10113214
254 Ga0105243_10133398
255 Ga0105248_10021589
256 Ga0105248_10078570
257 Ga0105239_10149645
258 Ga0157373_10106004
259 Ga0157371_10020876
260 Ga0157370_10090745
261 Ga0157370_10109390
262 Ga0157369_10061066
263 Ga0157369_10394604
264 Ga0157374_10145477
265 Ga0163162_10048646
266 Ga0157380_10011746
267 Ga0157376_10018087
268 Ga0163161_10130062
269 Ga0207697_10004559
270 Ga0207680_10001724
271 Ga0207680_10052783
272 Ga0207680_10170065
273 Ga0207647_10005668
274 Ga0207647_10054219
275 Ga0207705_10022056
276 Ga0207705_10059095
277 Ga0207693_10019887
278 Ga0207660_10002059
279 Ga0207657_10110918
280 Ga0207657_10131250
281 Ga0207681_10050878
282 Ga0207644_10016091
283 Ga0207644_10065312
284 Ga0207644_10089871
285 Ga0207706_10003671
286 Ga0207706_10131247
287 Ga0207669_10063453
288 Ga0207669_10076464
289 Ga0207669_10133662
290 Ga0207691_10023345
291 Ga0207711_10000639
292 Ga0207711_10013863
293 Ga0207667_10180280
294 Ga0207667_10404745
295 Ga0207651_10013199
296 Ga0207651_10015189
297 Ga0207658_10001050
298 Ga0207677_10000837
299 Ga0207703_10002825
300 Ga0207678_10040674
301 Ga0207641_10045277
302 Ga0207676_10202569
303 Ga0207674_10000655
304 Ga0207675_100039143
305 Ga0207683_10029369
306 Ga0268266_10000200
307 Ga0268266_10050296
308 Ga0268265_10031004
309 Ga0268265_10115207
310 Ga0307408_100076143
311 Ga0307408_100128308
312 Ga0307405_10008972
313 Ga0307405_10122612
314 Ga0307413_10002717
315 Ga0307413_10003911
316 Ga0307413_10004047
317 Ga0307413_10064478
318 Ga0307410_10017511
319 Ga0307406_10020141
320 Ga0307406_10032431
321 Ga0307406_10040837
322 Ga0307406_10056319
323 Ga0307406_10062031
324 Ga0307406_10188653
325 Ga0307407_10002378
326 Ga0307407_10003310
327 Ga0307407_10027301
328 Ga0307407_10049829
329 Ga0307412_10012637
330 Ga0307412_10186060
331 Ga0307409_100036568
332 Ga0307409_100041893
333 Ga0307409_100191798
334 Ga0307416_100008527
335 Ga0307416_100288301
336 Ga0307416_100347923
337 Ga0307414_10001976
338 Ga0307414_10004240
339 Ga0307414_10007249
340 Ga0307414_10048664
341 Ga0307414_10053355
342 Ga0307414_10078975
343 Ga0307414_10152616
344 Ga0307411_10000651
345 Ga0307411_10002827
346 Ga0307411_10070747
347 Ga0307415_100019157
348 Ga0307415_100031073
349 Ga0307415_100031340
350 Ga0373954_0012702
351 Ga0373955_0015651
352 Ga0373933_0005237
353 Ga0395900_0000731
354 Ga0395900_0001094
355 Ga0395900_0033270
356 Ga0395900_0034968
357 Ga0395900_0036975
358 Ga0395900_0055243
359 Ga0395900_0057611
360 Ga0395900_0140163
361 Ga0395900_0178917
362 Ga0395898_0361817
363 Ga0395905_0000232
364 Ga0395905_0000383
365 Ga0395905_0000897
366 Ga0395905_0003327
367 Ga0395905_0023418
368 Ga0395905_0028518
369 Ga0395905_0060535
370 Ga0395905_0063092
371 Ga0395905_0066595
372 Ga0395901_0000086
373 Ga0395901_0000677
374 Ga0395901_0018036
375 Ga0395901_0034177
376 Ga0395901_0035499
377 Ga0395901_0072461
378 Ga0395901_0078149
379 Ga0395901_0086148
380 Ga0395901_0195078
381 Ga0439458_0000052
382 Ga0466971_0052694
383 Ga0466960_0038273
384 Ga0466967_0038638
385 Ga0466967_0227072
386 Ga0495643_0098833
387 Ga0495677_0002552
388 Ga0495602_0090463
389 Ga0496100_0193895
390 Ga0496101_0016150
391 Ga0496102_0285560
392 Ga0496103_0059838
393 Ga0496103_0064165
394 Ga0496106_0035350
395 Ga0496107_0037298
396 Ga0496109_0058429
397 Ga0496109_0113291
398 Ga0496111_0125761
399 Ga0496112_0011048
400 Ga0496112_0059034
401 Ga0496112_0160450
402 Ga0496113_0016929
403 Ga0501225_0005814
404 Ga0501270_001113

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13649

Methyltransf_25

Methyltransferase domain

268

357

0.92

PF01189

Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

257

453

0.89

PF01029

NusB

NusB family

54

161

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3m6w-assembly1.cif.gz_A multi-site-specific 16s rrna methyltransferase rsmf from thermus thermophilus in space group p21212 in complex with s-adenosyl-l-methionine 0.8679 139 419
3d3c-assembly3.cif.gz_C structural and functional analysis of the e. coli nusb-s10 transcription antitermination complex. 0.8614 13 124
8esq-assembly1.cif.gz_q ytm1 associated nascent 60s ribosome state 2 0.8555 142 419
2frx-assembly2.cif.gz_B crystal structure of yebu, a m5c rna methyltransferase from e.coli 0.8511 139 419
3m4x-assembly1.cif.gz_A structure of a ribosomal methyltransferase 0.8462 139 419
ID Description Score Start End Superfamily
af_A0A1D6EFY7_537_616_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9183 231 285 3.40.50.150
af_Q0ISZ5_12_118_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8904 231 284 3.40.50.720
af_C0H5A2_481_622_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8898 229 284 3.40.50.150
2yxlA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8799 215 415 3.40.50.150
1sqfA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8745 215 418 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A7Y4TC47-F1-model_v4 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.944 205 419 GO:0001510
GO:0003723
GO:0008173
AF-A0A258BIT4-F1-model_v4 rRNA methyltransferase 0.94 143 417 GO:0001510
GO:0003723
GO:0008173
AF-A0A7Y4TC47-F1-model_v4 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.9398 205 419 GO:0001510
GO:0003723
GO:0008173
AF-A0A7Z9FD13-F1-model_v4 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.9324 213 419 GO:0001510
GO:0003723
GO:0008173
AF-A0A2W4SPW8-F1-model_v4 rRNA methyltransferase 0.9237 257 419 GO:0001510
GO:0003723
GO:0008173

Map