F309538

General Info

Members Datasets Scaffolds Average Seq Length
202 130 404 501

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100061636|Ga0070706_1000616361
Length 545
Sequence MARLHEFQGKAILAKYGFAIPRGGPASTPEQAREIAKSIGGPVVIKIQAWTTGRAAIGGIAFAENPDQAADHAKRMLGMRVGQFGVTHVLVEEKLPLSREIFLSLSINDHERCPMMLLSFSGGSGIEQRGADVHRIPCDVRDGPSPTALENALRCWEGEAPAEPNASARGSPARQEPRPPSACDVILNAARDAFRAMRASEARSLEINPLGITSNGKLIAVDCRITIDDYAAFRHPELGIDIARELDHPPTELERIAYKIEQDDHRGTFYFAQLATSAAPNSRGLIGFHGAGGGGSMMSMDAVTNENFTIANFCDTSGNPSAAKVYRAARIILSQPGLVGYFGSGSGVASQEQFWSAYGLAKGFWEMNLDIPAVIRLGGNSEDRAVNILQRACKGLSASVEGYKKSDPPAKIAARFAELVESSDKKQWQPRKKRTPDFVGSGSSISYPIKAGRLWIDAARWKEIKSVVLANAFGLLRDEGRKPALAVSESELATKDSELIACEVECRIAGVGGVFVDLEFAGRTDSSQFTVHNSHAEGGNAATTS

Samples

Sample ID Description Type Environment
1 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
15 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
16 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
31 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
32 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
33 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
34 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
36 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
37 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
43 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
80 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
81 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
82 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
83 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
84 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
85 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
86 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
87 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
88 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
89 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
90 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
91 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
92 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
93 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
94 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
95 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
96 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
97 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
98 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
99 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
100 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
101 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
102 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
103 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
104 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
105 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
106 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
107 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
108 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
109 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
110 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
113 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
114 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
115 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
116 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
117 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
118 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
119 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
120 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
121 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
122 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
125 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
130 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 8.91
Rhizosphere 90.1
Stem 0
Stem Tuber 0
Unclassified 12.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070706_100061636 3300005467 Bacteria 3464
2 JGI25406J46586_10000023 3300003203 Bacteria 76640
3 Ga0065704_10005794 3300005289 Bacteria 3078
4 Ga0070676_10011190 3300005328 Bacteria 4876
5 Ga0070682_100073322 3300005337 Unclassified 2196
6 Ga0070660_100036385 3300005339 Unclassified 3729
7 Ga0070689_100001174 3300005340 Bacteria 16578
8 Ga0070668_100040122 3300005347 Unclassified 3582
9 Ga0070675_100005049 3300005354 Bacteria 10075
10 Ga0070675_100063183 3300005354 Bacteria 3060
11 Ga0070688_100003728 3300005365 Bacteria 7885
12 Ga0070659_100005940 3300005366 Bacteria 8804
13 Ga0070714_100084325 3300005435 Bacteria 2772
14 Ga0070714_100085503 3300005435 Bacteria 2755
15 Ga0070714_100196049 3300005435 Bacteria 1845
16 Ga0070713_100124741 3300005436 Unclassified 2263
17 Ga0070713_100163216 3300005436 Unclassified 1990
18 Ga0070710_10090104 3300005437 Bacteria 1807
19 Ga0070711_100010297 3300005439 Bacteria 5784
20 Ga0070711_100031644 3300005439 Bacteria 3514
21 Ga0070700_100006857 3300005441 Bacteria 6112
22 Ga0070708_100032989 3300005445 Unclassified 4497
23 Ga0070708_100122567 3300005445 Unclassified 2400
24 Ga0070678_100128022 3300005456 Bacteria 2013
25 Ga0070662_100045349 3300005457 Bacteria 3153
26 Ga0070706_100000512 3300005467 Bacteria 45504
27 Ga0070706_100054089 3300005467 Bacteria 3706
28 Ga0070707_100003636 3300005468 Bacteria 14540
29 Ga0070707_100019268 3300005468 Bacteria 6426
30 Ga0070707_100121720 3300005468 Bacteria 2534
31 Ga0070707_100139346 3300005468 Bacteria 2360
32 Ga0070698_100003285 3300005471 Bacteria 17773
33 Ga0070698_100115414 3300005471 Bacteria 2650
34 Ga0070679_100014087 3300005530 Bacteria 7668
35 Ga0070684_100013461 3300005535 Bacteria 6597
36 Ga0070697_100002611 3300005536 Bacteria 13869
37 Ga0070697_100013833 3300005536 Bacteria 6332
38 Ga0070697_100023952 3300005536 Bacteria 4857
39 Ga0070697_100040611 3300005536 Bacteria 3765
40 Ga0070697_100094306 3300005536 Bacteria 2479
41 Ga0070697_100133605 3300005536 Bacteria 2082
42 Ga0070697_100186035 3300005536 Bacteria 1761
43 Ga0070672_100113027 3300005543 Bacteria 2216
44 Ga0070686_100104293 3300005544 Bacteria 1920
45 Ga0070665_100043247 3300005548 Unclassified 4527
46 Ga0068864_100019989 3300005618 Bacteria 5599
47 Ga0068858_100020445 3300005842 Bacteria 6188
48 Ga0068860_100011562 3300005843 Bacteria 8701
49 Ga0068860_100101238 3300005843 Bacteria 2749
50 Ga0068862_100109842 3300005844 Bacteria 2420
51 Ga0081455_10000742 3300005937 Bacteria 42383
52 Ga0081455_10001620 3300005937 Bacteria 27485
53 Ga0081455_10018356 3300005937 Bacteria 6667
54 Ga0081455_10026429 3300005937 Bacteria 5339
55 Ga0081455_10081862 3300005937 Bacteria 2643
56 Ga0081455_10117300 3300005937 Bacteria 2104
57 Ga0081540_1000324 3300005983 Bacteria 49372
58 Ga0081540_1033421 3300005983 Bacteria 2793
59 Ga0081539_10000014 3300005985 Bacteria 411270
60 Ga0081539_10017074 3300005985 Bacteria 5125
61 Ga0081539_10029392 3300005985 Bacteria 3434
62 Ga0070717_10003629 3300006028 Bacteria 11068
63 Ga0070717_10111756 3300006028 Bacteria 2331
64 Ga0070715_10021679 3300006163 Bacteria 2494
65 Ga0070712_100000781 3300006175 Bacteria 18817
66 Ga0070712_100015546 3300006175 Bacteria 4907
67 Ga0068871_100081669 3300006358 Bacteria 2678
68 Ga0111539_10001393 3300009094 Bacteria 32172
69 Ga0111539_10197907 3300009094 Unclassified 2344
70 Ga0105245_10172763 3300009098 Unclassified 2059
71 Ga0114129_10139627 3300009147 Bacteria 3323
72 Ga0105249_10025395 3300009553 Bacteria 5333
73 Ga0105249_10039768 3300009553 Unclassified 4269
74 Ga0105249_10043579 3300009553 Bacteria 4080
75 Ga0105239_10077190 3300010375 Bacteria 3666
76 Ga0157369_10035818 3300013105 Bacteria 5441
77 Ga0157374_10042646 3300013296 Bacteria 4186
78 Ga0157374_10132229 3300013296 Bacteria 2415
79 Ga0157374_10165910 3300013296 Bacteria 2152
80 Ga0157378_10085685 3300013297 Bacteria 2854
81 Ga0157375_10003350 3300013308 Bacteria 13885
82 Ga0157375_10319476 3300013308 Bacteria 1717
83 Ga0163163_10191149 3300014325 Bacteria 2096
84 Ga0157379_10006601 3300014968 Bacteria 10013
85 Ga0207697_10004096 3300025315 Bacteria 7046
86 Ga0207697_10004575 3300025315 Bacteria 6585
87 Ga0207697_10004799 3300025315 Bacteria 6393
88 Ga0207697_10006499 3300025315 Bacteria 5282
89 Ga0207697_10009587 3300025315 Bacteria 4175
90 Ga0207697_10030414 3300025315 Bacteria 2210
91 Ga0207692_10032123 3300025898 Unclassified 2520
92 Ga0207692_10040997 3300025898 Bacteria 2289
93 Ga0207680_10071589 3300025903 Bacteria 2150
94 Ga0207645_10010588 3300025907 Bacteria 6328
95 Ga0207684_10000379 3300025910 Bacteria 60091
96 Ga0207684_10039877 3300025910 Bacteria 3981
97 Ga0207684_10059617 3300025910 Unclassified 3241
98 Ga0207693_10003591 3300025915 Bacteria 13244
99 Ga0207693_10063724 3300025915 Unclassified 2888
100 Ga0207693_10104084 3300025915 Bacteria 2226
101 Ga0207663_10002275 3300025916 Bacteria 9192
102 Ga0207663_10006121 3300025916 Bacteria 6124
103 Ga0207662_10059179 3300025918 Bacteria 2296
104 Ga0207657_10037526 3300025919 Unclassified 4325
105 Ga0207646_10000594 3300025922 Bacteria 47141
106 Ga0207646_10001407 3300025922 Bacteria 29861
107 Ga0207659_10008095 3300025926 Bacteria 6506
108 Ga0207659_10022297 3300025926 Bacteria 4215
109 Ga0207700_10097359 3300025928 Unclassified 2338
110 Ga0207664_10089398 3300025929 Bacteria 2522
111 Ga0207690_10004562 3300025932 Bacteria 8180
112 Ga0207706_10001978 3300025933 Bacteria 20090
113 Ga0207670_10014682 3300025936 Unclassified 4657
114 Ga0207665_10058195 3300025939 Bacteria 2612
115 Ga0207651_10141602 3300025960 Unclassified 1858
116 Ga0207712_10021035 3300025961 Unclassified 4278
117 Ga0207712_10070432 3300025961 Bacteria 2512
118 Ga0207668_10039240 3300025972 Bacteria 3185
119 Ga0207658_10021113 3300025986 Bacteria 4515
120 Ga0207658_10094977 3300025986 Bacteria 2322
121 Ga0207703_10063695 3300026035 Unclassified 3024
122 Ga0207678_10020941 3300026067 Bacteria 5731
123 Ga0207708_10029634 3300026075 Unclassified 4149
124 Ga0207675_100025004 3300026118 Bacteria 5557
125 Ga0207683_10172526 3300026121 Bacteria 1959
126 Ga0268266_10012952 3300028379 Bacteria 7191
127 Ga0268265_10060165 3300028380 Bacteria 2910
128 Ga0268264_10057322 3300028381 Unclassified 3258
129 Ga0307513_10021827 3300031456 Bacteria 7548
130 Ga0316575_10002282 3300031665 Bacteria 6412
131 Ga0316579_10004468 3300031691 Bacteria 5553
132 Ga0316579_10028088 3300031691 Archaea 2560
133 Ga0316579_10054398 3300031691 Bacteria 1876
134 Ga0316576_10016633 3300031727 Bacteria 4975
135 Ga0316577_10004747 3300031733 Bacteria 7059
136 Ga0316577_10012512 3300031733 Bacteria 4623
137 Ga0316577_10012835 3300031733 Bacteria 4571
138 Ga0316577_10018021 3300031733 Bacteria 3903
139 Ga0316577_10031079 3300031733 Bacteria 2983
140 Ga0373944_0013639 3300035089 Bacteria 2259
141 Ga0316574_0013054 3300035398 Unclassified 4767
142 Ga0373935_0065439 3300035692 Bacteria 2333
143 Ga0373937_0070628 3300036401 Bacteria 3221
144 Ga0316582_0001405 3300036647 Bacteria 10504
145 Ga0316582_0018300 3300036647 Bacteria 4075
146 Ga0316582_0027617 3300036647 Bacteria 3430
147 Ga0316582_0184588 3300036647 Bacteria 1420
148 Ga0316584_0000705 3300036712 Bacteria 18547
149 Ga0316584_0010229 3300036712 Bacteria 6551
150 Ga0316584_0015467 3300036712 Bacteria 5458
151 Ga0316584_0035644 3300036712 Unclassified 3692
152 Ga0316584_0071094 3300036712 Bacteria 2608
153 Ga0316584_0144477 3300036712 Bacteria 1773
154 Ga0395899_0029352 3300037312 Bacteria 4137
155 Ga0395900_0006100 3300037418 Bacteria 12569
156 Ga0395898_0007993 3300037466 Bacteria 11222
157 Ga0316581_0001372 3300037588 Bacteria 5432
158 Ga0316581_0016723 3300037588 Bacteria 2109
159 Ga0395901_0001224 3300038443 Bacteria 27359
160 Ga0395901_0020946 3300038443 Bacteria 6699
161 Ga0400489_81511 3300039093 Bacteria 45817
162 Ga0495592_0003894 3300046454 Bacteria 10805
163 Ga0495651_0159161 3300046462 Bacteria 1620
164 Ga0495653_0051217 3300046463 Bacteria 3171
165 Ga0495618_0087904 3300046514 Bacteria 1988
166 Ga0495628_0032287 3300046516 Bacteria 4227
167 Ga0495630_0033441 3300046517 Bacteria 3835
168 Ga0495652_0039376 3300046529 Bacteria 4087
169 Ga0495640_0080110 3300046533 Unclassified 2173
170 Ga0495587_0092311 3300046536 Bacteria 1748
171 Ga0495645_0015360 3300046543 Bacteria 5444
172 Ga0495634_0061309 3300046642 Bacteria 2500
173 Ga0495599_0001599 3300046678 Bacteria 13058
174 Ga0495623_0025062 3300046679 Bacteria 3842
175 Ga0495658_0007537 3300046683 Bacteria 5392
176 Ga0495613_0045953 3300046689 Bacteria 3229
177 Ga0495613_0097329 3300046689 Bacteria 2127
178 Ga0495674_0014845 3300047319 Bacteria 7287
179 Ga0495676_0061741 3300047321 Bacteria 2930
180 Ga0495680_0091441 3300047322 Bacteria 2281
181 Ga0495684_0007989 3300047471 Bacteria 8177
182 Ga0496100_0015793 3300048903 Bacteria 4416
183 Ga0496101_0026640 3300048904 Bacteria 4020
184 Ga0496102_0199158 3300048905 Bacteria 1888
185 Ga0496104_0033502 3300048907 Bacteria 4786
186 Ga0496105_0042897 3300048908 Bacteria 3730
187 Ga0496105_0055137 3300048908 Bacteria 3282
188 Ga0496106_0004288 3300048909 Bacteria 10600
189 Ga0496106_0115819 3300048909 Bacteria 2090
190 Ga0496107_0021587 3300048910 Bacteria 4551
191 Ga0496107_0198374 3300048910 Bacteria 1491
192 Ga0496108_0077059 3300048911 Bacteria 2819
193 Ga0496109_0025344 3300048912 Bacteria 5284
194 Ga0496110_0168214 3300048913 Bacteria 1988
195 Ga0496112_0221913 3300048915 Bacteria 1846
196 Ga0496114_0079123 3300048917 Bacteria 2774
197 Ga0496114_0120457 3300048917 Bacteria 2256
198 Ga0496115_0008588 3300048918 Bacteria 7561
199 Ga0496115_0051872 3300048918 Bacteria 3289
200 nmdc:mga05p37_14740_c1 3300050507 Bacteria 9388
201 Ga0495601_0014608 3300053077 Bacteria 4733
202 Ga0495619_0101891 3300053085 Bacteria 1955
203 Ga0070706_100061636
204 JGI25406J46586_10000023
205 Ga0065704_10005794
206 Ga0070676_10011190
207 Ga0070682_100073322
208 Ga0070660_100036385
209 Ga0070689_100001174
210 Ga0070668_100040122
211 Ga0070675_100005049
212 Ga0070675_100063183
213 Ga0070688_100003728
214 Ga0070659_100005940
215 Ga0070714_100084325
216 Ga0070714_100085503
217 Ga0070714_100196049
218 Ga0070713_100124741
219 Ga0070713_100163216
220 Ga0070710_10090104
221 Ga0070711_100010297
222 Ga0070711_100031644
223 Ga0070700_100006857
224 Ga0070708_100032989
225 Ga0070708_100122567
226 Ga0070678_100128022
227 Ga0070662_100045349
228 Ga0070706_100000512
229 Ga0070706_100054089
230 Ga0070707_100003636
231 Ga0070707_100019268
232 Ga0070707_100121720
233 Ga0070707_100139346
234 Ga0070698_100003285
235 Ga0070698_100115414
236 Ga0070679_100014087
237 Ga0070684_100013461
238 Ga0070697_100002611
239 Ga0070697_100013833
240 Ga0070697_100023952
241 Ga0070697_100040611
242 Ga0070697_100094306
243 Ga0070697_100133605
244 Ga0070697_100186035
245 Ga0070672_100113027
246 Ga0070686_100104293
247 Ga0070665_100043247
248 Ga0068864_100019989
249 Ga0068858_100020445
250 Ga0068860_100011562
251 Ga0068860_100101238
252 Ga0068862_100109842
253 Ga0081455_10000742
254 Ga0081455_10001620
255 Ga0081455_10018356
256 Ga0081455_10026429
257 Ga0081455_10081862
258 Ga0081455_10117300
259 Ga0081540_1000324
260 Ga0081540_1033421
261 Ga0081539_10000014
262 Ga0081539_10017074
263 Ga0081539_10029392
264 Ga0070717_10003629
265 Ga0070717_10111756
266 Ga0070715_10021679
267 Ga0070712_100000781
268 Ga0070712_100015546
269 Ga0068871_100081669
270 Ga0111539_10001393
271 Ga0111539_10197907
272 Ga0105245_10172763
273 Ga0114129_10139627
274 Ga0105249_10025395
275 Ga0105249_10039768
276 Ga0105249_10043579
277 Ga0105239_10077190
278 Ga0157369_10035818
279 Ga0157374_10042646
280 Ga0157374_10132229
281 Ga0157374_10165910
282 Ga0157378_10085685
283 Ga0157375_10003350
284 Ga0157375_10319476
285 Ga0163163_10191149
286 Ga0157379_10006601
287 Ga0207697_10004096
288 Ga0207697_10004575
289 Ga0207697_10004799
290 Ga0207697_10006499
291 Ga0207697_10009587
292 Ga0207697_10030414
293 Ga0207692_10032123
294 Ga0207692_10040997
295 Ga0207680_10071589
296 Ga0207645_10010588
297 Ga0207684_10000379
298 Ga0207684_10039877
299 Ga0207684_10059617
300 Ga0207693_10003591
301 Ga0207693_10063724
302 Ga0207693_10104084
303 Ga0207663_10002275
304 Ga0207663_10006121
305 Ga0207662_10059179
306 Ga0207657_10037526
307 Ga0207646_10000594
308 Ga0207646_10001407
309 Ga0207659_10008095
310 Ga0207659_10022297
311 Ga0207700_10097359
312 Ga0207664_10089398
313 Ga0207690_10004562
314 Ga0207706_10001978
315 Ga0207670_10014682
316 Ga0207665_10058195
317 Ga0207651_10141602
318 Ga0207712_10021035
319 Ga0207712_10070432
320 Ga0207668_10039240
321 Ga0207658_10021113
322 Ga0207658_10094977
323 Ga0207703_10063695
324 Ga0207678_10020941
325 Ga0207708_10029634
326 Ga0207675_100025004
327 Ga0207683_10172526
328 Ga0268266_10012952
329 Ga0268265_10060165
330 Ga0268264_10057322
331 Ga0307513_10021827
332 Ga0316575_10002282
333 Ga0316579_10004468
334 Ga0316579_10028088
335 Ga0316579_10054398
336 Ga0316576_10016633
337 Ga0316577_10004747
338 Ga0316577_10012512
339 Ga0316577_10012835
340 Ga0316577_10018021
341 Ga0316577_10031079
342 Ga0373944_0013639
343 Ga0316574_0013054
344 Ga0373935_0065439
345 Ga0373937_0070628
346 Ga0316582_0001405
347 Ga0316582_0018300
348 Ga0316582_0027617
349 Ga0316582_0184588
350 Ga0316584_0000705
351 Ga0316584_0010229
352 Ga0316584_0015467
353 Ga0316584_0035644
354 Ga0316584_0071094
355 Ga0316584_0144477
356 Ga0395899_0029352
357 Ga0395900_0006100
358 Ga0395898_0007993
359 Ga0316581_0001372
360 Ga0316581_0016723
361 Ga0395901_0001224
362 Ga0395901_0020946
363 Ga0400489_81511
364 Ga0495592_0003894
365 Ga0495651_0159161
366 Ga0495653_0051217
367 Ga0495618_0087904
368 Ga0495628_0032287
369 Ga0495630_0033441
370 Ga0495652_0039376
371 Ga0495640_0080110
372 Ga0495587_0092311
373 Ga0495645_0015360
374 Ga0495634_0061309
375 Ga0495599_0001599
376 Ga0495623_0025062
377 Ga0495658_0007537
378 Ga0495613_0045953
379 Ga0495613_0097329
380 Ga0495674_0014845
381 Ga0495676_0061741
382 Ga0495680_0091441
383 Ga0495684_0007989
384 Ga0496100_0015793
385 Ga0496101_0026640
386 Ga0496102_0199158
387 Ga0496104_0033502
388 Ga0496105_0042897
389 Ga0496105_0055137
390 Ga0496106_0004288
391 Ga0496106_0115819
392 Ga0496107_0021587
393 Ga0496107_0198374
394 Ga0496108_0077059
395 Ga0496109_0025344
396 Ga0496110_0168214
397 Ga0496112_0221913
398 Ga0496114_0079123
399 Ga0496114_0120457
400 Ga0496115_0008588
401 Ga0496115_0051872
402 nmdc:mga05p37_14740_c1
403 Ga0495601_0014608
404 Ga0495619_0101891

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08442

ATP-grasp_2

ATP-grasp domain

3

156

0.9

PF02786

CPSase_L_D2

Carbamoyl-phosphate synthase L chain, ATP binding domain

6

116

0.86

PF13549

ATP-grasp_5

ATP-grasp domain

1

137

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
6no6-assembly1.cif.gz_B k46be&k114bd mutant atp-grasp fold of blastocystis hominis succinyl-coa synthetase 0.8906 3 208
6no1-assembly1.cif.gz_A adp bound to k46be mutant atp-grasp fold of blastocystis hominis succinyl-coa synthetase 0.8894 3 207
6no5-assembly2.cif.gz_D adp bound to k46be&k114bd mutant atp-grasp fold of blastocystis hominis succinyl-coa synthetase 0.887 3 208
6no3-assembly1.cif.gz_B adp bound to v113bl mutant atp-grasp fold of blastocystis hominis succinyl-coa synthetase 0.8849 3 208
6no0-assembly1.cif.gz_A adp bound to atp-grasp fold of blastocystis hominis succinyl-coa synthetase 0.8752 3 207
ID Description Score Start End Superfamily
3ufxB02 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;ATP-grasp fold, A domain 0.939 22 97 3.30.1490.20
3ufxB02 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1;ATP-grasp fold, A domain 0.9275 22 97 3.30.1490.20
af_Q2FZ37_21_104_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.9268 22 94 3.30.470.20
af_P0A836_21_104_3.30.470.20 Alpha Beta;2-Layer Sandwich;D-amino Acid Aminotransferase; Chain A, domain 1;ATP-grasp fold, B domain 0.8909 22 97 3.30.470.20
af_A0A1D6HDG8_329_429_3.40.50.261 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Succinyl-CoA synthetase domains 0.8769 233 311 3.40.50.261
ID Description Score Start End GO Terms
AF-A0A2V6HDD2-F1-model_v4 ATP-grasp domain-containing protein 0.983 1 188 GO:0004775
GO:0005524
GO:0006099
GO:0006104
GO:0042709
GO:0046872
AF-A0A2V5YRN4-F1-model_v4 Succinate--CoA ligase subunit beta (EC 6.2.1.5) 0.9824 1 223 GO:0004775
GO:0005524
GO:0006099
GO:0006104
GO:0042709
GO:0046872
AF-A0A2V5VAY9-F1-model_v4 ATP-grasp fold succinyl-CoA synthetase-type domain-containing protein 0.981 1 192 GO:0004775
GO:0005524
GO:0006099
GO:0006104
GO:0042709
AF-A0A2V5YRN4-F1-model_v4 Succinate--CoA ligase subunit beta (EC 6.2.1.5) 0.978 1 223 GO:0004775
GO:0005524
GO:0006099
GO:0006104
GO:0042709
GO:0046872
AF-A0A537G5I8-F1-model_v4 ADP-forming succinate--CoA ligase subunit beta 0.9699 3 100 GO:0004775
GO:0005524
GO:0006099
GO:0006104
GO:0042709
GO:0046872

Map