F308719

General Info

Members Datasets Scaffolds Average Seq Length
201 133 402 307

Family's Representative Sequence

Representative Sequence 3300032126|Ga0307415_100336476|Ga0307415_1003364761
Length 333
Sequence MSAPPTRGDLQTPPVPVAPPGLPPVQLVPAPRGRTAGLRGWPRRTTSVSPSGRRRGRLTPLLLLLPAIVPIAVALGYPLVRQFVLSFQEYGLAQQFGRPAEWVGLDNYTELLSDAYVWGVIVRSVVFCLACAGVTMAIGTALAVLMTRTGGIARTALQISLLLAWGTPVLATMTVWQWLFDSQYGVVNWVLAEPLGMTGMRNHSWLIEPLSFYAVAAVIVVWMSVPFVAFSVYAGLLQVPAEMLEAAELDGAGGWPRFRLLVVPMIRPVLVVVALLQVIWDLRVFTQIYVLQRAGAPTRETHLLGTYIYSLSKEFSMAGAVVYIRRMLREEDA

Samples

Sample ID Description Type Environment
1 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
11 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
17 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
19 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
20 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
21 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
22 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
23 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
24 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
29 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
56 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
59 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
60 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
61 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
62 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
63 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
64 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
67 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
68 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
69 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
70 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
71 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
72 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
73 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
74 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
75 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
76 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
77 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
78 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
79 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
80 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
81 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
82 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
83 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
84 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
85 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
86 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
95 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
96 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
97 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
98 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
103 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
104 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
105 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
106 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
107 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
108 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
109 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
112 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
113 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
114 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
115 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
116 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
117 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
118 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
119 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
120 2643221615 Nocardioides sp. Root224 Isolate Unclassified
121 2643221641 Nocardioides sp. Root122 Isolate Unclassified
122 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
123 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
124 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
125 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
126 2739367898 Nocardioides sp. CF479 Isolate Unclassified
127 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
128 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
129 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
130 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
131 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
132 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
133 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 93.03
Metatranscriptomes 0
Isolates 6.97

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 28.86
Nodule 0.5
Rhizoplane 7.46
Rhizosphere 54.73
Stem 0
Stem Tuber 0
Unclassified 4.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307415_100336476 3300032126 Bacteria 1265
2 Ga0070658_10105519 3300005327 Bacteria 2331
3 Ga0070658_10255186 3300005327 Bacteria 1488
4 Ga0070690_100073111 3300005330 Unclassified 2230
5 Ga0068869_100097584 3300005334 Bacteria 2219
6 Ga0068868_100059699 3300005338 Bacteria 3018
7 Ga0070668_100148239 3300005347 Bacteria 1895
8 Ga0070671_100031122 3300005355 Bacteria 4407
9 Ga0070674_100121040 3300005356 Bacteria 1938
10 Ga0068867_100017246 3300005459 Bacteria 5128
11 Ga0070685_10115100 3300005466 Bacteria 1663
12 Ga0070686_100007876 3300005544 Bacteria 5955
13 Ga0070665_100534805 3300005548 Bacteria 1184
14 Ga0068852_100657442 3300005616 Bacteria 1056
15 Ga0068859_100518546 3300005617 Bacteria 1287
16 Ga0068861_100008542 3300005719 Bacteria 7051
17 Ga0068860_100000713 3300005843 Bacteria 38044
18 Ga0068860_100049106 3300005843 Bacteria 4021
19 Ga0081539_10009211 3300005985 Bacteria 8314
20 Ga0081539_10023861 3300005985 Bacteria 3991
21 Ga0081539_10034029 3300005985 Bacteria 3091
22 Ga0075365_10002645 3300006038 Bacteria 8888
23 Ga0075365_10030318 3300006038 Bacteria 3463
24 Ga0075365_10074683 3300006038 Bacteria 2286
25 Ga0075365_10100603 3300006038 Bacteria 1979
26 Ga0075365_10107178 3300006038 Bacteria 1918
27 Ga0075365_10130200 3300006038 Bacteria 1741
28 Ga0075365_10160462 3300006038 Bacteria 1566
29 Ga0075365_10221216 3300006038 Bacteria 1328
30 Ga0075368_10006582 3300006042 Bacteria 4066
31 Ga0075363_100020612 3300006048 Bacteria 3308
32 Ga0075364_10001373 3300006051 Bacteria 13146
33 Ga0075364_10048197 3300006051 Bacteria 2776
34 Ga0075364_10059686 3300006051 Bacteria 2500
35 Ga0075364_10116722 3300006051 Bacteria 1784
36 Ga0075364_10253681 3300006051 Bacteria 1196
37 Ga0075367_10014232 3300006178 Bacteria 4300
38 Ga0075367_10015405 3300006178 Bacteria 4155
39 Ga0075367_10067049 3300006178 Bacteria 2151
40 Ga0075367_10152287 3300006178 Bacteria 1436
41 Ga0075367_10178740 3300006178 Bacteria 1323
42 Ga0075370_10047365 3300006353 Bacteria 2434
43 Ga0075370_10132930 3300006353 Bacteria 1452
44 Ga0075370_10170039 3300006353 Bacteria 1281
45 Ga0068871_100306283 3300006358 Unclassified 1396
46 Ga0097620_100518522 3300006931 Bacteria 1287
47 Ga0111539_10018194 3300009094 Bacteria 8705
48 Ga0105245_10246495 3300009098 Bacteria 1734
49 Ga0105243_10029420 3300009148 Bacteria 4224
50 Ga0105243_10262084 3300009148 Bacteria 1548
51 Ga0105242_10209688 3300009176 Unclassified 1736
52 Ga0105238_10589863 3300009551 Unclassified 1118
53 Ga0105249_10059059 3300009553 Bacteria 3517
54 Ga0157370_10133188 3300013104 Bacteria 2318
55 Ga0157369_10047807 3300013105 Bacteria 4644
56 Ga0157378_10005610 3300013297 Bacteria 10992
57 Ga0163162_10380162 3300013306 Bacteria 1545
58 Ga0157375_10160377 3300013308 Bacteria 2390
59 Ga0157375_10275778 3300013308 Bacteria 1844
60 Ga0163163_10094564 3300014325 Bacteria 3007
61 Ga0157380_10041560 3300014326 Bacteria 3589
62 Ga0207697_10034221 3300025315 Bacteria 2080
63 Ga0207642_10105710 3300025899 Unclassified 1423
64 Ga0207660_10316429 3300025917 Bacteria 1246
65 Ga0207644_10074101 3300025931 Bacteria 2498
66 Ga0207686_10394223 3300025934 Bacteria 1053
67 Ga0207709_10041159 3300025935 Bacteria 2771
68 Ga0207709_10298591 3300025935 Bacteria 1197
69 Ga0207670_10085697 3300025936 Unclassified 2214
70 Ga0207704_10025824 3300025938 Bacteria 3212
71 Ga0207691_10336738 3300025940 Bacteria 1292
72 Ga0207689_10305253 3300025942 Bacteria 1319
73 Ga0207712_10031590 3300025961 Bacteria 3568
74 Ga0207668_10230749 3300025972 Bacteria 1492
75 Ga0207678_10076739 3300026067 Bacteria 2862
76 Ga0207708_10044264 3300026075 Bacteria 3392
77 Ga0207648_10008155 3300026089 Bacteria 10183
78 Ga0207675_100068974 3300026118 Bacteria 3304
79 Ga0207675_100292760 3300026118 Bacteria 1584
80 Ga0209813_10007681 3300027866 Bacteria 2694
81 Ga0209813_10014611 3300027866 Bacteria 2117
82 Ga0209813_10032862 3300027866 Bacteria 1540
83 Ga0268265_10561816 3300028380 Bacteria 1085
84 Ga0268264_10000354 3300028381 Bacteria 69023
85 Ga0268264_10061385 3300028381 Bacteria 3153
86 Ga0268264_10128185 3300028381 Unclassified 2246
87 Ga0268264_10425201 3300028381 Unclassified 1282
88 Ga0307513_10001552 3300031456 Bacteria 32935
89 Ga0316576_10124769 3300031727 Bacteria 1934
90 Ga0316578_10070313 3300031728 Bacteria 2072
91 Ga0316578_10148300 3300031728 Bacteria 1413
92 Ga0307412_10077152 3300031911 Bacteria 2291
93 Ga0307415_100195766 3300032126 Bacteria 1599
94 Ga0307415_100412917 3300032126 Bacteria 1156
95 Ga0316574_0064605 3300035398 Bacteria 2303
96 Ga0316584_0000415 3300036712 Bacteria 22282
97 Ga0395900_0233914 3300037418 Bacteria 1847
98 Ga0395901_0059575 3300038443 Bacteria 3972
99 Ga0439461_0022865 3300041410 Bacteria 1255
100 Ga0439461_0033867 3300041410 Bacteria 1077
101 Ga0451789_1090216 3300041443 Bacteria 1258
102 Ga0451791_0051581 3300041451 Bacteria 5847
103 Ga0451797_0954588 3300041453 Bacteria 3836
104 Ga0451843_0154460 3300041509 Bacteria 3885
105 Ga0451843_0567149 3300041509 Bacteria 1205
106 Ga0451853_1275465 3300041512 Bacteria 2438
107 Ga0451853_1818779 3300041512 Bacteria 1887
108 Ga0439445_0016335 3300042004 Bacteria 1825
109 Ga0439434_0009206 3300042435 Bacteria 2903
110 Ga0466965_0156658 3300044683 Bacteria 1193
111 Ga0466960_0000880 3300044901 Bacteria 10608
112 Ga0466960_0025653 3300044901 Bacteria 2669
113 Ga0496101_0041752 3300048904 Bacteria 3272
114 Ga0496102_0091937 3300048905 Bacteria 2809
115 Ga0496105_0017455 3300048908 Bacteria 5756
116 Ga0496108_0227320 3300048911 Bacteria 1622
117 Ga0496108_0511060 3300048911 Bacteria 1049
118 Ga0496109_0086737 3300048912 Unclassified 2891
119 Ga0496109_0496480 3300048912 Bacteria 1152
120 Ga0496110_0272368 3300048913 Bacteria 1541
121 Ga0496111_0211769 3300048914 Bacteria 1439
122 Ga0496114_0024462 3300048917 Bacteria 4931
123 Ga0496114_0053682 3300048917 Bacteria 3359
124 Ga0496114_0068378 3300048917 Bacteria 2982
125 Ga0496122_0001200 3300048925 Bacteria 44223
126 Ga0496124_0183401 3300048927 Bacteria 1608
127 Ga0501031_0059418 3300049568 Bacteria 2492
128 Ga0501031_0216109 3300049568 Bacteria 1249
129 Ga0501032_0155624 3300049569 Bacteria 1502
130 Ga0501034_0016442 3300049571 Bacteria 7592
131 Ga0501034_0167004 3300049571 Bacteria 2169
132 Ga0501036_0213069 3300049572 Bacteria 1623
133 Ga0501038_0145311 3300049574 Bacteria 1937
134 Ga0501038_0158114 3300049574 Bacteria 1844
135 Ga0501039_0031345 3300049575 Bacteria 4099
136 Ga0501039_0130926 3300049575 Bacteria 1969
137 Ga0501039_0246806 3300049575 Bacteria 1404
138 Ga0501040_0191563 3300049576 Bacteria 1451
139 Ga0501042_0154508 3300049578 Bacteria 1655
140 Ga0501067_0016213 3300049583 Bacteria 4118
141 Ga0501068_0193779 3300049584 Bacteria 1288
142 Ga0501071_0038818 3300049587 Bacteria 3404
143 Ga0501071_0149339 3300049587 Bacteria 1743
144 Ga0501072_0031996 3300049588 Bacteria 4118
145 Ga0501072_0157363 3300049588 Bacteria 1812
146 Ga0501072_0335450 3300049588 Bacteria 1201
147 Ga0501075_0072366 3300049591 Bacteria 2606
148 Ga0501076_0258608 3300049592 Bacteria 1425
149 Ga0501079_0064617 3300049741 Bacteria 2823
150 Ga0501080_0125171 3300049742 Bacteria 2381
151 Ga0501081_0108913 3300049743 Bacteria 1965
152 nmdc:mga03683_35334_c1 3300050489 Bacteria 2027
153 nmdc:mga03n38_12356_c1 3300050490 Bacteria 3210
154 nmdc:mga03n38_124734_c1 3300050490 Bacteria 1270
155 nmdc:mga00v17_2725_c1 3300050491 Bacteria 9068
156 nmdc:mga00v17_37775_c1 3300050491 Bacteria 2885
157 nmdc:mga00v17_4969_c1 3300050491 Bacteria 6974
158 nmdc:mga00v17_50091_c1 3300050491 Bacteria 2536
159 nmdc:mga00v17_67505_c1 3300050491 Bacteria 2209
160 nmdc:mga00v17_85874_c1 3300050491 Bacteria 1971
161 nmdc:mga0yw44_16083_c1 3300050492 Bacteria 4032
162 nmdc:mga0yw44_170360_c1 3300050492 Bacteria 1429
163 nmdc:mga0yw44_17925_c1 3300050492 Bacteria 3866
164 nmdc:mga0yw44_208172_c1 3300050492 Bacteria 1293
165 nmdc:mga0yw44_44425_c1 3300050492 Bacteria 2189
166 nmdc:mga0yw44_5977_c1 3300050492 Bacteria 5826
167 nmdc:mga0yw44_99061_c1 3300050492 Bacteria 1854
168 nmdc:mga06z11_131163_c1 3300050494 Bacteria 1408
169 nmdc:mga06z11_8540_c1 3300050494 Bacteria 4281
170 nmdc:mga06z11_97875_c1 3300050494 Bacteria 1604
171 nmdc:mga04h51_21836_c1 3300050495 Bacteria 1930
172 nmdc:mga04h51_2464_c1 3300050495 Bacteria 4399
173 nmdc:mga04h51_3517_c1 3300050495 Bacteria 3811
174 nmdc:mga07m45_20683_c1 3300050496 Bacteria 3576
175 nmdc:mga07m45_32265_c1 3300050496 Bacteria 2905
176 nmdc:mga07m45_64987_c1 3300050496 Bacteria 2071
177 nmdc:mga08y16_263431_c1 3300050511 Bacteria 1780
178 nmdc:mga0sz30_43729_c1 3300050516 Bacteria 1886
179 Ga0500556_0001259 3300053104 Bacteria 11657
180 Ga0500593_012303 3300053117 Bacteria 3623
181 Ga0500568_0025354 3300053139 Bacteria 2503
182 Ga0500573_0000584 3300053140 Bacteria 16001
183 Ga0500573_0022941 3300053140 Bacteria 3583
184 Ga0500616_0004283 3300053153 Bacteria 10249
185 Ga0501084_0513288 3300054114 Bacteria 1013
186 Ga0501082_0560056 3300060353 Bacteria 1000
187 Ga0530510_0003452 3300061734 Bacteria 10866
188 2644092778 2643221615 Bacteria 5487866
189 2644231167 2643221641 Bacteria 4490190
190 2644322391 2643221657 Bacteria 5490246
191 2644506310 2643221690 Bacteria 4654705
192 2644526304 2643221694 Bacteria 4392972
193 2644670979 2643221722 Bacteria 4247614
194 2740166509 2739367898 Bacteria 4367674
195 2837269253 2837268691 Bacteria 7850704
196 2855388010 2855386786 Bacteria 4752232
197 2857734447 2857733635 Bacteria 3532004
198 2868094729 2868088558 Bacteria 7609351
199 2884994866 2884994152 Bacteria 4492978
200 2939659352 2939657138 Bacteria 3740283
201 8054610508 8054609563 Bacteria 5170090
202 Ga0307415_100336476
203 Ga0070658_10105519
204 Ga0070658_10255186
205 Ga0070690_100073111
206 Ga0068869_100097584
207 Ga0068868_100059699
208 Ga0070668_100148239
209 Ga0070671_100031122
210 Ga0070674_100121040
211 Ga0068867_100017246
212 Ga0070685_10115100
213 Ga0070686_100007876
214 Ga0070665_100534805
215 Ga0068852_100657442
216 Ga0068859_100518546
217 Ga0068861_100008542
218 Ga0068860_100000713
219 Ga0068860_100049106
220 Ga0081539_10009211
221 Ga0081539_10023861
222 Ga0081539_10034029
223 Ga0075365_10002645
224 Ga0075365_10030318
225 Ga0075365_10074683
226 Ga0075365_10100603
227 Ga0075365_10107178
228 Ga0075365_10130200
229 Ga0075365_10160462
230 Ga0075365_10221216
231 Ga0075368_10006582
232 Ga0075363_100020612
233 Ga0075364_10001373
234 Ga0075364_10048197
235 Ga0075364_10059686
236 Ga0075364_10116722
237 Ga0075364_10253681
238 Ga0075367_10014232
239 Ga0075367_10015405
240 Ga0075367_10067049
241 Ga0075367_10152287
242 Ga0075367_10178740
243 Ga0075370_10047365
244 Ga0075370_10132930
245 Ga0075370_10170039
246 Ga0068871_100306283
247 Ga0097620_100518522
248 Ga0111539_10018194
249 Ga0105245_10246495
250 Ga0105243_10029420
251 Ga0105243_10262084
252 Ga0105242_10209688
253 Ga0105238_10589863
254 Ga0105249_10059059
255 Ga0157370_10133188
256 Ga0157369_10047807
257 Ga0157378_10005610
258 Ga0163162_10380162
259 Ga0157375_10160377
260 Ga0157375_10275778
261 Ga0163163_10094564
262 Ga0157380_10041560
263 Ga0207697_10034221
264 Ga0207642_10105710
265 Ga0207660_10316429
266 Ga0207644_10074101
267 Ga0207686_10394223
268 Ga0207709_10041159
269 Ga0207709_10298591
270 Ga0207670_10085697
271 Ga0207704_10025824
272 Ga0207691_10336738
273 Ga0207689_10305253
274 Ga0207712_10031590
275 Ga0207668_10230749
276 Ga0207678_10076739
277 Ga0207708_10044264
278 Ga0207648_10008155
279 Ga0207675_100068974
280 Ga0207675_100292760
281 Ga0209813_10007681
282 Ga0209813_10014611
283 Ga0209813_10032862
284 Ga0268265_10561816
285 Ga0268264_10000354
286 Ga0268264_10061385
287 Ga0268264_10128185
288 Ga0268264_10425201
289 Ga0307513_10001552
290 Ga0316576_10124769
291 Ga0316578_10070313
292 Ga0316578_10148300
293 Ga0307412_10077152
294 Ga0307415_100195766
295 Ga0307415_100412917
296 Ga0316574_0064605
297 Ga0316584_0000415
298 Ga0395900_0233914
299 Ga0395901_0059575
300 Ga0439461_0022865
301 Ga0439461_0033867
302 Ga0451789_1090216
303 Ga0451791_0051581
304 Ga0451797_0954588
305 Ga0451843_0154460
306 Ga0451843_0567149
307 Ga0451853_1275465
308 Ga0451853_1818779
309 Ga0439445_0016335
310 Ga0439434_0009206
311 Ga0466965_0156658
312 Ga0466960_0000880
313 Ga0466960_0025653
314 Ga0496101_0041752
315 Ga0496102_0091937
316 Ga0496105_0017455
317 Ga0496108_0227320
318 Ga0496108_0511060
319 Ga0496109_0086737
320 Ga0496109_0496480
321 Ga0496110_0272368
322 Ga0496111_0211769
323 Ga0496114_0024462
324 Ga0496114_0053682
325 Ga0496114_0068378
326 Ga0496122_0001200
327 Ga0496124_0183401
328 Ga0501031_0059418
329 Ga0501031_0216109
330 Ga0501032_0155624
331 Ga0501034_0016442
332 Ga0501034_0167004
333 Ga0501036_0213069
334 Ga0501038_0145311
335 Ga0501038_0158114
336 Ga0501039_0031345
337 Ga0501039_0130926
338 Ga0501039_0246806
339 Ga0501040_0191563
340 Ga0501042_0154508
341 Ga0501067_0016213
342 Ga0501068_0193779
343 Ga0501071_0038818
344 Ga0501071_0149339
345 Ga0501072_0031996
346 Ga0501072_0157363
347 Ga0501072_0335450
348 Ga0501075_0072366
349 Ga0501076_0258608
350 Ga0501079_0064617
351 Ga0501080_0125171
352 Ga0501081_0108913
353 nmdc:mga03683_35334_c1
354 nmdc:mga03n38_12356_c1
355 nmdc:mga03n38_124734_c1
356 nmdc:mga00v17_2725_c1
357 nmdc:mga00v17_37775_c1
358 nmdc:mga00v17_4969_c1
359 nmdc:mga00v17_50091_c1
360 nmdc:mga00v17_67505_c1
361 nmdc:mga00v17_85874_c1
362 nmdc:mga0yw44_16083_c1
363 nmdc:mga0yw44_170360_c1
364 nmdc:mga0yw44_17925_c1
365 nmdc:mga0yw44_208172_c1
366 nmdc:mga0yw44_44425_c1
367 nmdc:mga0yw44_5977_c1
368 nmdc:mga0yw44_99061_c1
369 nmdc:mga06z11_131163_c1
370 nmdc:mga06z11_8540_c1
371 nmdc:mga06z11_97875_c1
372 nmdc:mga04h51_21836_c1
373 nmdc:mga04h51_2464_c1
374 nmdc:mga04h51_3517_c1
375 nmdc:mga07m45_20683_c1
376 nmdc:mga07m45_32265_c1
377 nmdc:mga07m45_64987_c1
378 nmdc:mga08y16_263431_c1
379 nmdc:mga0sz30_43729_c1
380 Ga0500556_0001259
381 Ga0500593_012303
382 Ga0500568_0025354
383 Ga0500573_0000584
384 Ga0500573_0022941
385 Ga0500616_0004283
386 Ga0501084_0513288
387 Ga0501082_0560056
388 Ga0530510_0003452
389 2644092778
390 2644231167
391 2644322391
392 2644506310
393 2644526304
394 2644670979
395 2740166509
396 2837269253
397 2855388010
398 2857734447
399 2868094729
400 2884994866
401 2939659352
402 8054610508

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

133

324

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7cad-assembly1.cif.gz_A mycobacterium smegmatis sugabc complex 0.9012 18 301
8hps-assembly1.cif.gz_A lpqy-sugabc in state 5 0.8934 18 301
7cad-assembly1.cif.gz_A mycobacterium smegmatis sugabc complex 0.8859 18 301
8ja7-assembly1.cif.gz_A cryo-em structure of mycobacterium tuberculosis lpqy-sugabc in complex with trehalose 0.8815 18 301
4jbw-assembly2.cif.gz_H crystal structure of e. coli maltose transporter malfgk2 in complex with its regulatory protein eiiaglc 0.8717 63 298
ID Description Score Start End Superfamily
af_P0AFR7_53_289_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9261 64 303 1.10.3720.10
af_P0AFR7_53_289_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9149 64 303 1.10.3720.10
af_P9WG03_18_293_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9121 16 300 1.10.3720.10
af_P9WG03_18_293_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9027 16 300 1.10.3720.10
af_P10905_52_292_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.9004 64 303 1.10.3720.10
ID Description Score Start End GO Terms
AF-C0VYF9-F1-model_v4 ABC transporter, permease protein 0.9538 29 306 GO:0005886
GO:0055085
AF-A0A1Q3T0E7-F1-model_v4 Sugar ABC transporter permease 0.9522 25 307 GO:0005886
GO:0055085
AF-A0A7K0J4V1-F1-model_v4 Sugar ABC transporter permease 0.9516 29 306 GO:0005886
GO:0055085
AF-A0A6I6SIL2-F1-model_v4 ABC transporter permease subunit 0.9453 23 305 GO:0005886
GO:0055085
AF-A0A1U9R086-F1-model_v4 ABC transmembrane type-1 domain-containing protein 0.9436 23 306 GO:0005886
GO:0055085

Map