F305142

General Info

Members Datasets Scaffolds Average Seq Length
198 152 396 392

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2582581314|2585317789
Length 464
Sequence RLLWPVRLRGAPAGVGAPLRLTGAAPVASFSPLFCPELASHSRFPGVGPVVGYLVRYAQGSARRAGAALAAVLTWAGLLAGAAGCTSDGTGGGTIGGVLDKPPGPEDVIRISPDDASKGVKSDEKLRVRVPSGRLESVTVVKEQDAQDSPVAGHISADGLRWEPDDHKLALAAKYTVDAVALDGDGHRSARHTTFTTYVPDERFIGYVTPENRSTVGTGMIVSLDFNREIENRAAVERAIHVTAKPAVEIRPHWFGTSRVDFRPETYWKPGTQVTVALRLRDVEGAPGVYGLQYKTFSFTVGRSQVSLVDAAKHTMEVRRDGDLLATVPITAGGPKTTTYNGKMVVMEMLEVTRMDSRTVGFGGEYDIPDVPHAMRLTDSGTFLHGNYWAPTAPGRVNVSHGCVGLRDVKGGSSDTPAGWFFDRSLIGDVIEVVHSNDKMVDPDNGLGGWNMSWNEWKAGSAVK

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
3 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
4 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
5 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
6 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
7 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
8 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
9 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
10 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
11 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
12 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
13 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
14 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
15 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
16 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
17 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
18 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
19 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
20 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
21 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
22 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
23 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
24 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
25 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
26 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
27 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
28 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
29 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
30 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
31 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
32 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
33 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
34 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
35 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
36 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
37 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
38 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
39 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
40 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
41 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
42 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
43 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
44 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
45 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
46 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
47 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
48 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
49 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
50 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
51 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
52 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
53 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
54 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
55 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
56 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
57 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
58 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
59 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
60 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
61 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
62 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
63 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
64 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
65 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
66 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
67 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
68 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
69 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
70 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
71 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
72 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
73 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
74 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
75 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
76 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
77 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
78 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
79 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
80 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
81 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
82 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
83 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
84 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
85 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
86 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
87 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
88 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
89 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
96 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
97 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
98 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
99 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
100 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
101 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
102 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
103 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
104 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
105 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
106 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
107 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
108 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
109 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
110 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
111 2643221548 Streptomyces sp. Root55 Isolate Unclassified
112 2643221578 Streptomyces sp. Root63 Isolate Unclassified
113 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
114 2643221647 Streptomyces sp. Root369 Isolate Unclassified
115 2643221670 Streptomyces sp. Root431 Isolate Unclassified
116 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
117 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
118 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
119 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
120 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
121 2808606448 Streptomyces sp. 193411 Isolate Unclassified
122 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
123 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
124 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
125 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
126 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
127 2862574272 Streptomyces sp. AcE210 Isolate Nodule
128 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
129 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
130 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
131 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
132 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
133 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
134 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
135 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
136 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
137 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
138 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
139 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
140 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
141 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
142 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
143 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
144 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
145 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
146 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
147 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
148 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
149 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
150 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
151 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
152 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.76
Metatranscriptomes 0.51
Isolates 23.74

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.06
Nodule 1.01
Rhizoplane 0
Rhizosphere 79.29
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10081761 3300003316 Bacteria 3284
2 Ga0006562J51391_1123762 3300003578 Bacteria 2270
3 Ga0068853_100055494 3300005539 Bacteria 3415
4 Ga0075367_10009777 3300006178 Bacteria 5024
5 Ga0099826_10043960 3300006948 Bacteria 3069
6 Ga0105251_10011889 3300009011 Bacteria 4944
7 Ga0105246_10029252 3300011119 Bacteria 3626
8 Ga0157375_10212366 3300013308 Bacteria 2093
9 Ga0207647_10013325 3300025904 Bacteria 5706
10 Ga0207639_10038431 3300026041 Bacteria 3560
11 Ga0307511_10000067 3300030521 Bacteria 86517
12 Ga0307511_10037137 3300030521 Bacteria 4215
13 Ga0307512_10025408 3300030522 Bacteria 5248
14 Ga0307513_10013427 3300031456 Bacteria 10052
15 Ga0307509_10040875 3300031507 Bacteria 5039
16 Ga0307508_10006228 3300031616 Bacteria 11245
17 Ga0307514_10034091 3300031649 Bacteria 4057
18 Ga0307516_10006032 3300031730 Bacteria 14327
19 Ga0307516_10016604 3300031730 Bacteria 7694
20 Ga0307416_100025767 3300032002 Bacteria 4319
21 Ga0395898_0016941 3300037466 Bacteria 7440
22 Ga0439448_0001205 3300042005 Bacteria 6593
23 Ga0439449_0008969 3300042007 Bacteria 3794
24 Ga0450903_001534 3300042138 Bacteria 4301
25 Ga0439458_0000660 3300042157 Bacteria 8888
26 Ga0466969_0014848 3300044656 Bacteria 4090
27 Ga0466969_0031437 3300044656 Bacteria 2702
28 Ga0466972_0003628 3300044658 Bacteria 7671
29 Ga0466972_0022175 3300044658 Bacteria 3162
30 Ga0466972_0100741 3300044658 Bacteria 1367
31 Ga0466965_0000197 3300044683 Bacteria 18834
32 Ga0466965_0006551 3300044683 Bacteria 5300
33 Ga0466966_0005707 3300044684 Bacteria 8191
34 Ga0466966_0026717 3300044684 Bacteria 3767
35 Ga0466961_0001581 3300044693 Bacteria 14118
36 Ga0466963_0006602 3300044694 Bacteria 6879
37 Ga0466964_0004023 3300044706 Bacteria 5404
38 Ga0466971_0017719 3300044719 Bacteria 3153
39 Ga0466970_0036327 3300044765 Bacteria 2610
40 Ga0466970_0054990 3300044765 Bacteria 2125
41 Ga0466957_0003086 3300044842 Bacteria 9070
42 Ga0466957_0041227 3300044842 Bacteria 2792
43 Ga0466960_0016350 3300044901 Bacteria 3216
44 Ga0466959_0023171 3300045049 Bacteria 4594
45 Ga0466958_0032390 3300045836 Bacteria 3109
46 Ga0466958_0130478 3300045836 Bacteria 1578
47 Ga0466967_0030786 3300045976 Bacteria 4507
48 Ga0466967_0112981 3300045976 Bacteria 2498
49 Ga0495617_023355 3300046452 Bacteria 2089
50 Ga0495627_025967 3300046453 Bacteria 1894
51 Ga0495603_0001087 3300046455 Bacteria 15787
52 Ga0495603_0002917 3300046455 Bacteria 10113
53 Ga0495603_0017900 3300046455 Bacteria 4288
54 Ga0495603_0039460 3300046455 Bacteria 2828
55 Ga0495629_0002585 3300046459 Bacteria 13861
56 Ga0495629_0005936 3300046459 Bacteria 9099
57 Ga0495629_0023371 3300046459 Bacteria 4405
58 Ga0495629_0031915 3300046459 Bacteria 3730
59 Ga0495638_0046617 3300046460 Bacteria 2722
60 Ga0495641_0058797 3300046461 Bacteria 1739
61 Ga0495585_0014041 3300046492 Bacteria 4677
62 Ga0495594_0000667 3300046499 Bacteria 17660
63 Ga0495594_0024452 3300046499 Bacteria 3244
64 Ga0495594_0057951 3300046499 Bacteria 2139
65 Ga0495606_0105830 3300046507 Bacteria 1704
66 Ga0495616_0007714 3300046513 Bacteria 6432
67 Ga0495620_0004318 3300046515 Bacteria 8036
68 Ga0495628_0016421 3300046516 Bacteria 6177
69 Ga0495628_0121455 3300046516 Bacteria 2003
70 Ga0495630_0088141 3300046517 Bacteria 2344
71 Ga0495631_0007503 3300046518 Bacteria 5545
72 Ga0495632_0019566 3300046519 Bacteria 3685
73 Ga0495632_0101627 3300046519 Bacteria 1355
74 Ga0495637_0018692 3300046520 Bacteria 3211
75 Ga0495643_0012985 3300046522 Bacteria 5003
76 Ga0495643_0061908 3300046522 Bacteria 1982
77 Ga0495643_0127238 3300046522 Bacteria 1282
78 Ga0495644_0047330 3300046523 Bacteria 1616
79 Ga0495642_0034556 3300046528 Bacteria 2037
80 Ga0495652_0180566 3300046529 Bacteria 1620
81 Ga0495654_0063663 3300046530 Bacteria 1765
82 Ga0495665_0054779 3300046531 Bacteria 2107
83 Ga0495640_0015585 3300046533 Bacteria 5714
84 Ga0495587_0072782 3300046536 Bacteria 1997
85 Ga0495609_0014067 3300046538 Bacteria 3768
86 Ga0495622_0009023 3300046557 Bacteria 4617
87 Ga0495633_0008650 3300046558 Bacteria 5715
88 Ga0495668_0034832 3300046616 Bacteria 2822
89 Ga0495634_0135283 3300046642 Bacteria 1568
90 Ga0495634_0293992 3300046642 Bacteria 983
91 Ga0495611_0007314 3300046648 Bacteria 4691
92 Ga0495611_0011242 3300046648 Bacteria 3794
93 Ga0495625_0009440 3300046660 Bacteria 8163
94 Ga0495625_0058114 3300046660 Bacteria 2749
95 Ga0495625_0180184 3300046660 Bacteria 1405
96 Ga0495635_0062233 3300046663 Bacteria 2563
97 Ga0495661_0018356 3300046665 Bacteria 4603
98 Ga0495588_0003902 3300046674 Bacteria 6537
99 Ga0495588_0016057 3300046674 Bacteria 3614
100 Ga0495588_0018851 3300046674 Bacteria 3371
101 Ga0495588_0069103 3300046674 Bacteria 1835
102 Ga0495657_0078203 3300046675 Bacteria 2144
103 Ga0495657_0082160 3300046675 Bacteria 2082
104 Ga0495613_0016614 3300046689 Bacteria 5478
105 Ga0495613_0159152 3300046689 Bacteria 1607
106 Ga0495670_0017738 3300046691 Bacteria 3504
107 Ga0495671_0108291 3300046692 Bacteria 1357
108 Ga0495649_0095736 3300046694 Bacteria 1580
109 Ga0495589_0006654 3300046794 Bacteria 6089
110 Ga0495589_0021853 3300046794 Bacteria 3268
111 Ga0495660_0015448 3300046810 Bacteria 4410
112 Ga0495604_0108859 3300047317 Bacteria 2023
113 Ga0495636_0003853 3300047318 Bacteria 5850
114 Ga0495636_0014652 3300047318 Bacteria 3119
115 Ga0495676_0026562 3300047321 Bacteria 4982
116 Ga0495676_0115854 3300047321 Bacteria 1958
117 Ga0495680_0043161 3300047322 Bacteria 3572
118 Ga0495687_001860 3300047443 Bacteria 18379
119 Ga0495687_006137 3300047443 Bacteria 7452
120 Ga0495687_055923 3300047443 Bacteria 1647
121 Ga0495675_0062011 3300047444 Bacteria 2368
122 Ga0495685_004512 3300047447 Bacteria 4505
123 Ga0495685_005021 3300047447 Bacteria 4305
124 Ga0495685_014025 3300047447 Bacteria 2719
125 Ga0495681_0000532 3300047470 Bacteria 29171
126 Ga0495681_0013957 3300047470 Bacteria 4633
127 Ga0495681_0026947 3300047470 Bacteria 2981
128 Ga0495681_0041887 3300047470 Bacteria 2220
129 Ga0495593_0034626 3300047673 Bacteria 2745
130 Ga0495593_0092818 3300047673 Bacteria 1554
131 Ga0495614_0010585 3300048089 Bacteria 4065
132 Ga0501031_0135199 3300049568 Bacteria 1611
133 Ga0501034_0024451 3300049571 Bacteria 6145
134 Ga0501038_0012561 3300049574 Bacteria 7738
135 Ga0501043_0030611 3300049579 Bacteria 4230
136 Ga0501047_0007592 3300049581 Bacteria 10204
137 Ga0501035_0049600 3300049822 Bacteria 3761
138 Ga0501035_0126282 3300049822 Bacteria 2233
139 nmdc:mga06z11_43712_c1 3300050494 Bacteria 2256
140 nmdc:mga04h51_5768_c1 3300050495 Bacteria 3172
141 Ga0500644_0004689 3300053088 Bacteria 3430
142 Ga0500566_0013061 3300053094 Bacteria 4894
143 Ga0500654_029932 3300053099 Bacteria 3296
144 Ga0500560_002024 3300053107 Bacteria 3749
145 Ga0500560_002309 3300053107 Bacteria 3608
146 Ga0500569_002842 3300053109 Bacteria 3462
147 Ga0500658_0004074 3300053134 Bacteria 5497
148 Ga0500561_0015478 3300053137 Bacteria 1692
149 Ga0500573_0012757 3300053140 Bacteria 4723
150 Ga0466962_0005548 3300061719 Bacteria 6055
151 Ga0466962_0019636 3300061719 Bacteria 3248
152 2585317789 2582581314 Bacteria 11452267
153 2547411447 2547132111 Bacteria 8013147
154 2554256168 2554235005 Bacteria 6457341
155 2616702188 2616644814 Bacteria 11555299
156 2616903321 2616644941 Bacteria 8510691
157 2643764079 2643221548 Bacteria 8053412
158 2643902194 2643221578 Bacteria 9213798
159 2643943995 2643221587 Bacteria 7586415
160 2644269403 2643221647 Bacteria 10741251
161 2644386975 2643221670 Bacteria 6497041
162 2644406651 2643221673 Bacteria 9196637
163 2644434732 2643221677 Bacteria 7584031
164 2644461489 2643221682 Bacteria 6743283
165 2784590476 2784132148 Bacteria 8627943
166 2785371580 2784746768 Bacteria 10036182
167 2809234151 2808606448 Bacteria 8656184
168 2811844332 2808606982 Bacteria 7791042
169 2812478687 2811994917 Bacteria 7761064
170 2862186497 2862178590 Bacteria 8583590
171 2862284658 2862281513 Bacteria 9621493
172 2862293789 2862290372 Bacteria 7471434
173 2862577433 2862574272 Bacteria 10567477
174 2873153983 2873151551 Bacteria 8625867
175 2875396760 2875391855 Bacteria 7600475
176 2877679031 2877676314 Bacteria 9512378
177 2912717543 2912715099 Bacteria 9460473
178 2912730087 2912723979 Bacteria 8557534
179 2912762843 2912757875 Bacteria 7940295
180 2918506581 2918501144 Bacteria 8668083
181 2946047792 2946045630 Bacteria 8527308
182 2954005572 2954002825 Bacteria 9173742
183 2954383929 2954380949 Bacteria 10050426
184 2954679036 2954673503 Bacteria 9685905
185 2954685117 2954682443 Bacteria 9862841
186 2954694726 2954691527 Bacteria 10720516
187 2954709929 2954701450 Bacteria 10834262
188 2954714231 2954711539 Bacteria 10867210
189 2954724182 2954721474 Bacteria 10456478
190 2954737657 2954731030 Bacteria 10243860
191 2954743078 2954740390 Bacteria 10229294
192 2954756492 2954749733 Bacteria 10366972
193 2954762036 2954759201 Bacteria 9358192
194 2966600802 2966598605 Bacteria 7676064
195 3006394064 3006393351 Bacteria 6615579
196 8008577087 8008574985 Bacteria 7815457
197 8025536193 8025530807 Bacteria 8495698
198 8056834130 8056829672 Bacteria 9045328
199 rootH1_10081761
200 Ga0006562J51391_1123762
201 Ga0068853_100055494
202 Ga0075367_10009777
203 Ga0099826_10043960
204 Ga0105251_10011889
205 Ga0105246_10029252
206 Ga0157375_10212366
207 Ga0207647_10013325
208 Ga0207639_10038431
209 Ga0307511_10000067
210 Ga0307511_10037137
211 Ga0307512_10025408
212 Ga0307513_10013427
213 Ga0307509_10040875
214 Ga0307508_10006228
215 Ga0307514_10034091
216 Ga0307516_10006032
217 Ga0307516_10016604
218 Ga0307416_100025767
219 Ga0395898_0016941
220 Ga0439448_0001205
221 Ga0439449_0008969
222 Ga0450903_001534
223 Ga0439458_0000660
224 Ga0466969_0014848
225 Ga0466969_0031437
226 Ga0466972_0003628
227 Ga0466972_0022175
228 Ga0466972_0100741
229 Ga0466965_0000197
230 Ga0466965_0006551
231 Ga0466966_0005707
232 Ga0466966_0026717
233 Ga0466961_0001581
234 Ga0466963_0006602
235 Ga0466964_0004023
236 Ga0466971_0017719
237 Ga0466970_0036327
238 Ga0466970_0054990
239 Ga0466957_0003086
240 Ga0466957_0041227
241 Ga0466960_0016350
242 Ga0466959_0023171
243 Ga0466958_0032390
244 Ga0466958_0130478
245 Ga0466967_0030786
246 Ga0466967_0112981
247 Ga0495617_023355
248 Ga0495627_025967
249 Ga0495603_0001087
250 Ga0495603_0002917
251 Ga0495603_0017900
252 Ga0495603_0039460
253 Ga0495629_0002585
254 Ga0495629_0005936
255 Ga0495629_0023371
256 Ga0495629_0031915
257 Ga0495638_0046617
258 Ga0495641_0058797
259 Ga0495585_0014041
260 Ga0495594_0000667
261 Ga0495594_0024452
262 Ga0495594_0057951
263 Ga0495606_0105830
264 Ga0495616_0007714
265 Ga0495620_0004318
266 Ga0495628_0016421
267 Ga0495628_0121455
268 Ga0495630_0088141
269 Ga0495631_0007503
270 Ga0495632_0019566
271 Ga0495632_0101627
272 Ga0495637_0018692
273 Ga0495643_0012985
274 Ga0495643_0061908
275 Ga0495643_0127238
276 Ga0495644_0047330
277 Ga0495642_0034556
278 Ga0495652_0180566
279 Ga0495654_0063663
280 Ga0495665_0054779
281 Ga0495640_0015585
282 Ga0495587_0072782
283 Ga0495609_0014067
284 Ga0495622_0009023
285 Ga0495633_0008650
286 Ga0495668_0034832
287 Ga0495634_0135283
288 Ga0495634_0293992
289 Ga0495611_0007314
290 Ga0495611_0011242
291 Ga0495625_0009440
292 Ga0495625_0058114
293 Ga0495625_0180184
294 Ga0495635_0062233
295 Ga0495661_0018356
296 Ga0495588_0003902
297 Ga0495588_0016057
298 Ga0495588_0018851
299 Ga0495588_0069103
300 Ga0495657_0078203
301 Ga0495657_0082160
302 Ga0495613_0016614
303 Ga0495613_0159152
304 Ga0495670_0017738
305 Ga0495671_0108291
306 Ga0495649_0095736
307 Ga0495589_0006654
308 Ga0495589_0021853
309 Ga0495660_0015448
310 Ga0495604_0108859
311 Ga0495636_0003853
312 Ga0495636_0014652
313 Ga0495676_0026562
314 Ga0495676_0115854
315 Ga0495680_0043161
316 Ga0495687_001860
317 Ga0495687_006137
318 Ga0495687_055923
319 Ga0495675_0062011
320 Ga0495685_004512
321 Ga0495685_005021
322 Ga0495685_014025
323 Ga0495681_0000532
324 Ga0495681_0013957
325 Ga0495681_0026947
326 Ga0495681_0041887
327 Ga0495593_0034626
328 Ga0495593_0092818
329 Ga0495614_0010585
330 Ga0501031_0135199
331 Ga0501034_0024451
332 Ga0501038_0012561
333 Ga0501043_0030611
334 Ga0501047_0007592
335 Ga0501035_0049600
336 Ga0501035_0126282
337 nmdc:mga06z11_43712_c1
338 nmdc:mga04h51_5768_c1
339 Ga0500644_0004689
340 Ga0500566_0013061
341 Ga0500654_029932
342 Ga0500560_002024
343 Ga0500560_002309
344 Ga0500569_002842
345 Ga0500658_0004074
346 Ga0500561_0015478
347 Ga0500573_0012757
348 Ga0466962_0005548
349 Ga0466962_0019636
350 2585317789
351 2547411447
352 2554256168
353 2616702188
354 2616903321
355 2643764079
356 2643902194
357 2643943995
358 2644269403
359 2644386975
360 2644406651
361 2644434732
362 2644461489
363 2784590476
364 2785371580
365 2809234151
366 2811844332
367 2812478687
368 2862186497
369 2862284658
370 2862293789
371 2862577433
372 2873153983
373 2875396760
374 2877679031
375 2912717543
376 2912730087
377 2912762843
378 2918506581
379 2946047792
380 2954005572
381 2954383929
382 2954679036
383 2954685117
384 2954694726
385 2954709929
386 2954714231
387 2954724182
388 2954737657
389 2954743078
390 2954756492
391 2954762036
392 2966600802
393 3006394064
394 8008577087
395 8025536193
396 8056834130

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF17964

Big_10

Bacterial Ig domain

117

284

0.95

PF03734

YkuD

L,D-transpeptidase catalytic domain

304

433

0.76

Structural Annotation

Top 5 Hits

ID Description Score Start End
4gsq-assembly1.cif.gz_A structural basis for the inhibition of mycobacterium tuberculosis l,d-transpeptidase by meropenem, a drug effective against extensively drug-resistant strains 0.9123 127 389
4gsq-assembly1.cif.gz_A structural basis for the inhibition of mycobacterium tuberculosis l,d-transpeptidase by meropenem, a drug effective against extensively drug-resistant strains 0.9087 127 389
7a1c-assembly1.cif.gz_A ldtmt2 with covalent adduct derived from n-thio-beta-lactam 1a 0.894 127 389
5lb1-assembly2.cif.gz_B crystal structure of the mycobacterium tuberculosis l,d-transpeptidase-2 (ldtmt2) bc-module with thionitrobenzoate (tnb) adduct at the active site cysteine-354 0.8908 128 387
7a1c-assembly1.cif.gz_A ldtmt2 with covalent adduct derived from n-thio-beta-lactam 1a 0.8906 127 389
ID Description Score Start End Superfamily
4hu2A02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9653 129 227 2.60.40.3710
5dujB02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9528 125 226 2.60.40.3710
4hu2A02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9467 129 227 2.60.40.3710
6d5aA02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.9441 124 226 2.60.40.3710
af_O07436_141_220_2.60.40.3710 Mainly Beta;Sandwich;Immunoglobulin-like; 0.918 135 227 2.60.40.3710
ID Description Score Start End GO Terms
AF-A0A0M8RJ85-F1-model_v4 Lipoprotein 0.9847 152 235
AF-A0A0L8M333-F1-model_v4 deleted 0.9717 129 273
AF-A0A0L8M333-F1-model_v4 deleted 0.9525 129 273
AF-A0A0M8RJ85-F1-model_v4 Lipoprotein 0.9512 152 235
AF-A0A1J4NZX6-F1-model_v4 L,D-TPase catalytic domain-containing protein 0.9283 24 388 GO:0005576
GO:0008360
GO:0016746
GO:0018104
GO:0071555
GO:0071972

Map