F303472

General Info

Members Datasets Scaffolds Average Seq Length
197 112 394 209

Family's Representative Sequence

Representative Sequence 3300046543|Ga0495645_0013486|Ga0495645_0013486_2352_3053
Length 233
Sequence LLRIARHRSNEFDAAIFPSNTPAFVMPITVSIVEDNEQLRNTLARVLNRADEFKCLSHYGSAEEAIKDIPKVHPEIVLMDINLPGINGVECVRQLKQIIPTLQVIMLTVYEDTENIFSALAAGANGYLLKRTKSAELLEAIHEVHRGGSPMTTHIARKVTQSFQKAGPSPKPTENLSQREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIRRIYEKLQVRTRTEAVAKFLRK

Samples

Sample ID Description Type Environment
1 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
2 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
3 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
6 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
13 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
23 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
25 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
28 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
35 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
36 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
55 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
58 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
59 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
60 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
61 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
62 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
63 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
64 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
65 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
66 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
67 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
68 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
69 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
70 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
71 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
72 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
73 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
74 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
75 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
76 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
77 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
78 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
79 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
80 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
85 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
86 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
87 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
88 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
89 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
90 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
91 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
92 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
93 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
94 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
95 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
96 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
97 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
98 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
99 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
100 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
101 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
102 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
103 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
104 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
109 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
110 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
111 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
112 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.02
Rhizosphere 98.98
Stem 0
Stem Tuber 0
Unclassified 30.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495645_0013486 3300046543 Bacteria 5780
2 Ga0070690_100168365 3300005330 Bacteria 1506
3 Ga0068868_100152747 3300005338 Bacteria 1902
4 Ga0068868_100210944 3300005338 Bacteria 1623
5 Ga0070689_100013308 3300005340 Bacteria 5950
6 Ga0070689_100083112 3300005340 Bacteria 2516
7 Ga0070689_100387358 3300005340 Unclassified 1179
8 Ga0070673_100715425 3300005364 Bacteria 920
9 Ga0070688_100018530 3300005365 Bacteria 4019
10 Ga0070688_100354720 3300005365 Bacteria 1075
11 Ga0070688_100674185 3300005365 Bacteria 798
12 Ga0070659_100951370 3300005366 Bacteria 752
13 Ga0070713_100028488 3300005436 Unclassified 4411
14 Ga0070711_100778488 3300005439 Bacteria 810
15 Ga0070705_100906688 3300005440 Unclassified 709
16 Ga0070694_100030513 3300005444 Bacteria 3528
17 Ga0068867_101040240 3300005459 Unclassified 744
18 Ga0070685_10014465 3300005466 Unclassified 4180
19 Ga0070698_100732562 3300005471 Unclassified 931
20 Ga0070684_100678261 3300005535 Unclassified 960
21 Ga0070686_100007941 3300005544 Bacteria 5934
22 Ga0070686_100226410 3300005544 Bacteria 1354
23 Ga0070686_100925945 3300005544 Unclassified 710
24 Ga0070704_100046866 3300005549 Bacteria 3018
25 Ga0068857_100007338 3300005577 Bacteria 9493
26 Ga0068856_100233374 3300005614 Bacteria 1855
27 Ga0068859_100325742 3300005617 Bacteria 1630
28 Ga0068859_100878053 3300005617 Bacteria 982
29 Ga0068863_100018559 3300005841 Bacteria 6658
30 Ga0068863_100123368 3300005841 Bacteria 2471
31 Ga0068863_100144504 3300005841 Unclassified 2275
32 Ga0068863_100147639 3300005841 Unclassified 2249
33 Ga0070712_100128279 3300006175 Bacteria 1919
34 Ga0097621_100008923 3300006237 Bacteria 7248
35 Ga0097621_100292600 3300006237 Unclassified 1436
36 Ga0068871_100062100 3300006358 Bacteria 3053
37 Ga0068871_100588760 3300006358 Unclassified 1011
38 Ga0068871_101353864 3300006358 Unclassified 670
39 Ga0075433_10656769 3300006852 Bacteria 919
40 Ga0075434_100462416 3300006871 Unclassified 1290
41 Ga0075434_100907285 3300006871 Unclassified 896
42 Ga0075429_100102194 3300006880 Unclassified 2502
43 Ga0075436_100108752 3300006914 Bacteria 1934
44 Ga0097620_100325746 3300006931 Bacteria 1630
45 Ga0097620_100756633 3300006931 Unclassified 1060
46 Ga0097620_100877890 3300006931 Bacteria 982
47 Ga0105240_10062391 3300009093 Bacteria 4640
48 Ga0111539_10121251 3300009094 Unclassified 3064
49 Ga0111539_10205934 3300009094 Unclassified 2293
50 Ga0111539_10358572 3300009094 Bacteria 1697
51 Ga0105245_10586057 3300009098 Bacteria 1140
52 Ga0105248_10207327 3300009177 Unclassified 2209
53 Ga0105248_10267485 3300009177 Bacteria 1925
54 Ga0157370_10117815 3300013104 Bacteria 2481
55 Ga0157370_10119118 3300013104 Bacteria 2465
56 Ga0157374_10372123 3300013296 Bacteria 1422
57 Ga0157374_10791770 3300013296 Bacteria 964
58 Ga0157378_10181883 3300013297 Bacteria 1978
59 Ga0157375_10000016 3300013308 Bacteria 295002
60 Ga0163163_10000038 3300014325 Bacteria 154457
61 Ga0163163_10343842 3300014325 Bacteria 1547
62 Ga0157376_10173129 3300014969 Bacteria 1967
63 Ga0157376_10491027 3300014969 Unclassified 1205
64 Ga0207695_10025455 3300025913 Bacteria 6623
65 Ga0207693_10352750 3300025915 Bacteria 1151
66 Ga0207663_10249967 3300025916 Bacteria 1304
67 Ga0207663_10416137 3300025916 Bacteria 1031
68 Ga0207660_10347917 3300025917 Archaea 1188
69 Ga0207700_10147277 3300025928 Unclassified 1942
70 Ga0207690_10807096 3300025932 Bacteria 776
71 Ga0207670_10047709 3300025936 Unclassified 2854
72 Ga0207670_10048971 3300025936 Bacteria 2823
73 Ga0207670_10614772 3300025936 Unclassified 893
74 Ga0207667_11109657 3300025949 Bacteria 774
75 Ga0207677_10113616 3300026023 Bacteria 2022
76 Ga0207702_10204961 3300026078 Bacteria 1831
77 Ga0207641_10215389 3300026088 Bacteria 1778
78 Ga0207641_10351847 3300026088 Unclassified 1404
79 Ga0207676_10318329 3300026095 Bacteria 1427
80 Ga0207674_10007462 3300026116 Bacteria 12746
81 Ga0268264_10159488 3300028381 Bacteria 2030
82 Ga0265337_1015851 3300028556 Bacteria 2453
83 Ga0265319_1000003 3300028563 Bacteria 340561
84 Ga0265338_10009789 3300028800 Bacteria 11373
85 Ga0265338_10023391 3300028800 Bacteria 6356
86 Ga0265338_10028162 3300028800 Bacteria 5612
87 Ga0265338_10183397 3300028800 Bacteria 1593
88 Ga0265338_10204455 3300028800 Bacteria 1487
89 Ga0265324_10043534 3300029957 Bacteria 1549
90 Ga0265324_10064283 3300029957 Bacteria 1252
91 Ga0265332_10081696 3300031238 Bacteria 1370
92 Ga0265328_10013735 3300031239 Bacteria 3199
93 Ga0265320_10055060 3300031240 Bacteria 1916
94 Ga0265320_10136839 3300031240 Bacteria 1111
95 Ga0265320_10199051 3300031240 Unclassified 895
96 Ga0265325_10186748 3300031241 Bacteria 963
97 Ga0265329_10005882 3300031242 Bacteria 4917
98 Ga0265339_10076959 3300031249 Bacteria 1768
99 Ga0265316_10257466 3300031344 Bacteria 1280
100 Ga0265316_10453604 3300031344 Bacteria 919
101 Ga0265313_10007287 3300031595 Bacteria 7594
102 Ga0316575_10131613 3300031665 Bacteria 1027
103 Ga0265314_10003902 3300031711 Bacteria 14173
104 Ga0316578_10162362 3300031728 Bacteria 1347
105 Ga0373944_0033262 3300035089 Bacteria 1561
106 Ga0373953_0079482 3300035117 Unclassified 1362
107 Ga0373954_0080249 3300035118 Unclassified 1558
108 Ga0373943_0017335 3300035170 Bacteria 3295
109 Ga0373946_0020151 3300035171 Bacteria 2576
110 Ga0373924_0030303 3300035410 Unclassified 2168
111 Ga0373931_0029429 3300035691 Unclassified 2820
112 Ga0373935_0008292 3300035692 Bacteria 6218
113 Ga0373935_0645755 3300035692 Unclassified 776
114 Ga0373933_0348491 3300035724 Unclassified 962
115 Ga0373937_0085604 3300036401 Unclassified 2917
116 Ga0373937_0917290 3300036401 Bacteria 825
117 Ga0316582_0740262 3300036647 Bacteria 675
118 Ga0373925_0178726 3300037068 Unclassified 1678
119 Ga0373925_0203064 3300037068 Bacteria 1577
120 Ga0373925_0409422 3300037068 Bacteria 1107
121 Ga0373925_0695569 3300037068 Bacteria 838
122 Ga0451577_0002953 3300042876 Bacteria 19468
123 Ga0451577_0008061 3300042876 Bacteria 10277
124 Ga0451577_0026918 3300042876 Bacteria 5206
125 Ga0451577_0041858 3300042876 Bacteria 4110
126 Ga0451577_0042999 3300042876 Unclassified 4048
127 Ga0451577_0431964 3300042876 Bacteria 1196
128 Ga0453684_0003488 3300044712 Bacteria 35324
129 Ga0453684_0011820 3300044712 Bacteria 14548
130 Ga0453684_0018269 3300044712 Bacteria 10778
131 Ga0453684_0061122 3300044712 Unclassified 4839
132 Ga0453684_0385474 3300044712 Bacteria 1573
133 Ga0453684_0928945 3300044712 Bacteria 930
134 Ga0453684_1033355 3300044712 Bacteria 872
135 Ga0453684_1687197 3300044712 Bacteria 648
136 Ga0451576_0032864 3300045051 Bacteria 5517
137 Ga0451576_0033336 3300045051 Bacteria 5474
138 Ga0451576_0039825 3300045051 Unclassified 4975
139 Ga0451576_0040568 3300045051 Bacteria 4926
140 Ga0451576_0145974 3300045051 Bacteria 2467
141 Ga0451576_0162225 3300045051 Bacteria 2333
142 Ga0451576_0176624 3300045051 Bacteria 2230
143 Ga0451576_0229890 3300045051 Bacteria 1937
144 Ga0451576_0257516 3300045051 Bacteria 1824
145 Ga0451576_0353587 3300045051 Bacteria 1538
146 Ga0451576_0500282 3300045051 Bacteria 1277
147 Ga0451576_0501851 3300045051 Bacteria 1275
148 Ga0451576_1257020 3300045051 Bacteria 772
149 Ga0495592_0000432 3300046454 Bacteria 31626
150 Ga0495592_0187482 3300046454 Unclassified 1404
151 Ga0495582_0044416 3300046473 Unclassified 2447
152 Ga0495662_0038853 3300046476 Unclassified 2299
153 Ga0495664_0279715 3300046477 Unclassified 1008
154 Ga0495608_0039505 3300046511 Bacteria 3163
155 Ga0495618_0037878 3300046514 Unclassified 3029
156 Ga0495628_0000054 3300046516 Bacteria 90760
157 Ga0495628_0017538 3300046516 Bacteria 5957
158 Ga0495630_0000031 3300046517 Bacteria 135085
159 Ga0495630_0023425 3300046517 Bacteria 4565
160 Ga0495630_0025737 3300046517 Bacteria 4352
161 Ga0495630_0029471 3300046517 Unclassified 4081
162 Ga0495630_0114580 3300046517 Bacteria 2043
163 Ga0495666_0011313 3300046526 Bacteria 4450
164 Ga0495652_0082717 3300046529 Unclassified 2645
165 Ga0495652_0090933 3300046529 Unclassified 2496
166 Ga0495640_0078144 3300046533 Unclassified 2205
167 Ga0495586_0000016 3300046535 Bacteria 126380
168 Ga0495586_0001016 3300046535 Bacteria 15847
169 Ga0495586_0012315 3300046535 Bacteria 4538
170 Ga0495586_0043720 3300046535 Bacteria 2413
171 Ga0495634_0009460 3300046642 Bacteria 7186
172 Ga0495634_0256091 3300046642 Bacteria 1069
173 Ga0495634_0281297 3300046642 Unclassified 1010
174 Ga0495599_0019159 3300046678 Bacteria 4267
175 Ga0495658_0010748 3300046683 Bacteria 4585
176 Ga0495658_0018780 3300046683 Unclassified 3600
177 Ga0495658_0207546 3300046683 Bacteria 1223
178 Ga0495658_0273876 3300046683 Unclassified 1064
179 Ga0495613_0002572 3300046689 Bacteria 13657
180 Ga0495624_0074378 3300046690 Unclassified 2111
181 Ga0495624_0119612 3300046690 Unclassified 1618
182 Ga0495674_0000794 3300047319 Bacteria 29966
183 Ga0495674_0229298 3300047319 Unclassified 1533
184 Ga0495674_0277275 3300047319 Unclassified 1374
185 Ga0495676_0003977 3300047321 Bacteria 13458
186 Ga0495684_0569921 3300047471 Unclassified 768
187 Ga0496112_0676571 3300048915 Archaea 961
188 Ga0496115_0004792 3300048918 Bacteria 9815
189 Ga0501033_0092914 3300049570 Unclassified 2206
190 Ga0501034_0393862 3300049571 Unclassified 1309
191 Ga0501083_0109971 3300049744 Bacteria 1812
192 nmdc:mga09592_98238_c1 3300050508 Unclassified 2506
193 nmdc:mga08y16_152178_c1 3300050511 Unclassified 2404
194 nmdc:mga08y16_305884_c1 3300050511 Bacteria 1638
195 nmdc:mga08y16_394971_c1 3300050511 Unclassified 1416
196 nmdc:mga0n895_516026_c1 3300050512 Unclassified 1203
197 Ga0495601_0597539 3300053077 Unclassified 708
198 Ga0495645_0013486
199 Ga0070690_100168365
200 Ga0068868_100152747
201 Ga0068868_100210944
202 Ga0070689_100013308
203 Ga0070689_100083112
204 Ga0070689_100387358
205 Ga0070673_100715425
206 Ga0070688_100018530
207 Ga0070688_100354720
208 Ga0070688_100674185
209 Ga0070659_100951370
210 Ga0070713_100028488
211 Ga0070711_100778488
212 Ga0070705_100906688
213 Ga0070694_100030513
214 Ga0068867_101040240
215 Ga0070685_10014465
216 Ga0070698_100732562
217 Ga0070684_100678261
218 Ga0070686_100007941
219 Ga0070686_100226410
220 Ga0070686_100925945
221 Ga0070704_100046866
222 Ga0068857_100007338
223 Ga0068856_100233374
224 Ga0068859_100325742
225 Ga0068859_100878053
226 Ga0068863_100018559
227 Ga0068863_100123368
228 Ga0068863_100144504
229 Ga0068863_100147639
230 Ga0070712_100128279
231 Ga0097621_100008923
232 Ga0097621_100292600
233 Ga0068871_100062100
234 Ga0068871_100588760
235 Ga0068871_101353864
236 Ga0075433_10656769
237 Ga0075434_100462416
238 Ga0075434_100907285
239 Ga0075429_100102194
240 Ga0075436_100108752
241 Ga0097620_100325746
242 Ga0097620_100756633
243 Ga0097620_100877890
244 Ga0105240_10062391
245 Ga0111539_10121251
246 Ga0111539_10205934
247 Ga0111539_10358572
248 Ga0105245_10586057
249 Ga0105248_10207327
250 Ga0105248_10267485
251 Ga0157370_10117815
252 Ga0157370_10119118
253 Ga0157374_10372123
254 Ga0157374_10791770
255 Ga0157378_10181883
256 Ga0157375_10000016
257 Ga0163163_10000038
258 Ga0163163_10343842
259 Ga0157376_10173129
260 Ga0157376_10491027
261 Ga0207695_10025455
262 Ga0207693_10352750
263 Ga0207663_10249967
264 Ga0207663_10416137
265 Ga0207660_10347917
266 Ga0207700_10147277
267 Ga0207690_10807096
268 Ga0207670_10047709
269 Ga0207670_10048971
270 Ga0207670_10614772
271 Ga0207667_11109657
272 Ga0207677_10113616
273 Ga0207702_10204961
274 Ga0207641_10215389
275 Ga0207641_10351847
276 Ga0207676_10318329
277 Ga0207674_10007462
278 Ga0268264_10159488
279 Ga0265337_1015851
280 Ga0265319_1000003
281 Ga0265338_10009789
282 Ga0265338_10023391
283 Ga0265338_10028162
284 Ga0265338_10183397
285 Ga0265338_10204455
286 Ga0265324_10043534
287 Ga0265324_10064283
288 Ga0265332_10081696
289 Ga0265328_10013735
290 Ga0265320_10055060
291 Ga0265320_10136839
292 Ga0265320_10199051
293 Ga0265325_10186748
294 Ga0265329_10005882
295 Ga0265339_10076959
296 Ga0265316_10257466
297 Ga0265316_10453604
298 Ga0265313_10007287
299 Ga0316575_10131613
300 Ga0265314_10003902
301 Ga0316578_10162362
302 Ga0373944_0033262
303 Ga0373953_0079482
304 Ga0373954_0080249
305 Ga0373943_0017335
306 Ga0373946_0020151
307 Ga0373924_0030303
308 Ga0373931_0029429
309 Ga0373935_0008292
310 Ga0373935_0645755
311 Ga0373933_0348491
312 Ga0373937_0085604
313 Ga0373937_0917290
314 Ga0316582_0740262
315 Ga0373925_0178726
316 Ga0373925_0203064
317 Ga0373925_0409422
318 Ga0373925_0695569
319 Ga0451577_0002953
320 Ga0451577_0008061
321 Ga0451577_0026918
322 Ga0451577_0041858
323 Ga0451577_0042999
324 Ga0451577_0431964
325 Ga0453684_0003488
326 Ga0453684_0011820
327 Ga0453684_0018269
328 Ga0453684_0061122
329 Ga0453684_0385474
330 Ga0453684_0928945
331 Ga0453684_1033355
332 Ga0453684_1687197
333 Ga0451576_0032864
334 Ga0451576_0033336
335 Ga0451576_0039825
336 Ga0451576_0040568
337 Ga0451576_0145974
338 Ga0451576_0162225
339 Ga0451576_0176624
340 Ga0451576_0229890
341 Ga0451576_0257516
342 Ga0451576_0353587
343 Ga0451576_0500282
344 Ga0451576_0501851
345 Ga0451576_1257020
346 Ga0495592_0000432
347 Ga0495592_0187482
348 Ga0495582_0044416
349 Ga0495662_0038853
350 Ga0495664_0279715
351 Ga0495608_0039505
352 Ga0495618_0037878
353 Ga0495628_0000054
354 Ga0495628_0017538
355 Ga0495630_0000031
356 Ga0495630_0023425
357 Ga0495630_0025737
358 Ga0495630_0029471
359 Ga0495630_0114580
360 Ga0495666_0011313
361 Ga0495652_0082717
362 Ga0495652_0090933
363 Ga0495640_0078144
364 Ga0495586_0000016
365 Ga0495586_0001016
366 Ga0495586_0012315
367 Ga0495586_0043720
368 Ga0495634_0009460
369 Ga0495634_0256091
370 Ga0495634_0281297
371 Ga0495599_0019159
372 Ga0495658_0010748
373 Ga0495658_0018780
374 Ga0495658_0207546
375 Ga0495658_0273876
376 Ga0495613_0002572
377 Ga0495624_0074378
378 Ga0495624_0119612
379 Ga0495674_0000794
380 Ga0495674_0229298
381 Ga0495674_0277275
382 Ga0495676_0003977
383 Ga0495684_0569921
384 Ga0496112_0676571
385 Ga0496115_0004792
386 Ga0501033_0092914
387 Ga0501034_0393862
388 Ga0501083_0109971
389 nmdc:mga09592_98238_c1
390 nmdc:mga08y16_152178_c1
391 nmdc:mga08y16_305884_c1
392 nmdc:mga08y16_394971_c1
393 nmdc:mga0n895_516026_c1
394 Ga0495601_0597539

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

174

230

0.96

PF00072

Response_reg

Response regulator receiver domain

30

142

0.95

PF08281

Sigma70_r4_2

Sigma-70, region 4

174

218

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3clo-assembly1.cif.gz_B crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9935 151 203
3clo-assembly2.cif.gz_C-2 crystal structure of putative transcriptional regulator containing a luxr dna binding domain (np_811094.1) from bacteroides thetaiotaomicron vpi-5482 at 2.04 a resolution 0.9903 151 203
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9894 151 207
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9742 151 203
1fse-assembly2.cif.gz_C crystal structure of the bacillus subtilis regulatory protein gere 0.9739 151 207
ID Description Score Start End Superfamily
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9903 151 203 1.10.10.10
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9879 151 203 1.10.10.10
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9874 150 203 1.10.10.10
4hyeA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9831 151 203 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9742 151 203 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A534CE86-F1-model_v4 Response regulator transcription factor 0.9505 2 134 GO:0000160
GO:0003677
AF-X1GPB7-F1-model_v4 Response regulatory domain-containing protein 0.9283 1 149 GO:0000160
GO:0003677
AF-A0A066YUJ2-F1-model_v4 LuxR family transcriptional regulator 0.9205 1 150 GO:0000160
GO:0003677
AF-A0A653IZ92-F1-model_v4 deleted 0.9187 3 153
AF-A0A1J5SVY0-F1-model_v4 Transcriptional regulatory protein DegU 0.9175 2 206 GO:0000160
GO:0003677
GO:0006355

Map