F302720

General Info

Members Datasets Scaffolds Average Seq Length
197 142 394 364

Family's Representative Sequence

Representative Sequence 3300005530|Ga0070679_100184384|Ga0070679_1001843842
Length 358
Sequence MATQTRSAIPNEDKLLEAARKGDENAFARLIEPYRTELHAHCYRMLGSVHDAEDALQESHLRAWRGLKSFEGRSSLRSWLYTIATNTCLNQIAKRPKRVLPVDYAPATDPHEGPGEPVVESVWIEPYPDETLGIEDGYASPDASYEMRESVELAFVAALQNLPPNQRAVLILREVLGFSAKEVADALDTSTDERTPEQSQQATLRTLGDEELTRLVDRYVEAWEKCDVDTVVAMLSEDVTFAMPPLASWFHGRASLTEFLAGWPMSGAWDWKAVRTSANGQPALAFYTFDEDEQAYLPFALNVLTFRGSEISDVVAFINRATDATEREAYHRFVDEPTDPERLKAAFERFQLPDRLEK

Samples

Sample ID Description Type Environment
1 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
23 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
27 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
44 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
45 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
46 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
47 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
73 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
74 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
75 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
76 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
77 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
78 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
79 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
85 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
86 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
87 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
88 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
89 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
90 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
91 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
92 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
93 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
94 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
95 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
96 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
97 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
98 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
99 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
100 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
101 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
102 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
103 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
104 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
105 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
106 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
107 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
108 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
109 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
110 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
111 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
112 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
113 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
114 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
115 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
116 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
117 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
120 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
121 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
122 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
125 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
126 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
127 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
130 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
134 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
135 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
136 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
137 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
138 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
139 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
140 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
141 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
142 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.02
Nodule 0
Rhizoplane 9.64
Rhizosphere 84.26
Stem 0
Stem Tuber 0
Unclassified 0.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070679_100184384 3300005530 Bacteria 2058
2 Ga0070683_100001254 3300005329 Bacteria 19309
3 Ga0070680_100001595 3300005336 Bacteria 16568
4 Ga0070682_100069766 3300005337 Bacteria 2245
5 Ga0068868_100012019 3300005338 Bacteria 6320
6 Ga0070660_100088842 3300005339 Bacteria 2434
7 Ga0070674_100160828 3300005356 Bacteria 1704
8 Ga0070673_100337062 3300005364 Bacteria 1335
9 Ga0070659_100001987 3300005366 Bacteria 14605
10 Ga0070714_100094341 3300005435 Bacteria 2626
11 Ga0070714_100175645 3300005435 Bacteria 1946
12 Ga0070714_100225906 3300005435 Bacteria 1723
13 Ga0070713_100085665 3300005436 Bacteria 2700
14 Ga0070678_100009329 3300005456 Bacteria 5938
15 Ga0070662_100009067 3300005457 Bacteria 6492
16 Ga0070681_10024904 3300005458 Bacteria 6021
17 Ga0070707_100005861 3300005468 Bacteria 11457
18 Ga0070684_100184670 3300005535 Bacteria 1896
19 Ga0068857_100051051 3300005577 Bacteria 3667
20 Ga0068854_100026328 3300005578 Bacteria 3997
21 Ga0068856_100028649 3300005614 Bacteria 5440
22 Ga0068852_100033842 3300005616 Bacteria 4248
23 Ga0068861_100017196 3300005719 Bacteria 5127
24 Ga0081540_1000993 3300005983 Bacteria 25522
25 Ga0081539_10017027 3300005985 Bacteria 5137
26 Ga0070717_10102600 3300006028 Bacteria 2430
27 Ga0070717_10163784 3300006028 Bacteria 1931
28 Ga0075365_10002462 3300006038 Bacteria 9094
29 Ga0075432_10013263 3300006058 Bacteria 2799
30 Ga0070715_10068115 3300006163 Bacteria 1582
31 Ga0070715_10099050 3300006163 Bacteria 1356
32 Ga0070712_100024984 3300006175 Bacteria 3965
33 Ga0070712_100026219 3300006175 Bacteria 3880
34 Ga0075428_100015318 3300006844 Bacteria 8503
35 Ga0075428_100075895 3300006844 Bacteria 3670
36 Ga0075428_100086598 3300006844 Bacteria 3417
37 Ga0075430_100017108 3300006846 Bacteria 6175
38 Ga0075430_100112466 3300006846 Bacteria 2270
39 Ga0075431_100003415 3300006847 Bacteria 15406
40 Ga0075431_100015661 3300006847 Bacteria 7687
41 Ga0075429_100000428 3300006880 Bacteria 31382
42 Ga0075429_100019918 3300006880 Bacteria 5818
43 Ga0105240_10076415 3300009093 Bacteria 4129
44 Ga0111539_10005468 3300009094 Bacteria 16436
45 Ga0111539_10042150 3300009094 Bacteria 5485
46 Ga0111539_10104853 3300009094 Bacteria 3317
47 Ga0111539_10118359 3300009094 Bacteria 3105
48 Ga0105245_10057724 3300009098 Bacteria 3492
49 Ga0114129_10003681 3300009147 Bacteria 21573
50 Ga0114129_10008507 3300009147 Bacteria 14627
51 Ga0114129_10101207 3300009147 Bacteria 3987
52 Ga0105248_10237776 3300009177 Bacteria 2050
53 Ga0105238_10046474 3300009551 Bacteria 4381
54 Ga0105249_10263319 3300009553 Bacteria 1714
55 Ga0105239_10080228 3300010375 Bacteria 3590
56 Ga0105239_10083406 3300010375 Bacteria 3520
57 Ga0157370_10005324 3300013104 Bacteria 14451
58 Ga0157369_10003714 3300013105 Bacteria 18150
59 Ga0157378_10113793 3300013297 Bacteria 2485
60 Ga0157372_10059699 3300013307 Bacteria 4266
61 Ga0213876_10071060 3300021384 Bacteria 1838
62 Ga0213875_10004409 3300021388 Bacteria 7730
63 Ga0213875_10069902 3300021388 Bacteria 1639
64 Ga0207692_10039737 3300025898 Bacteria 2317
65 Ga0207688_10037835 3300025901 Bacteria 2677
66 Ga0207699_10005405 3300025906 Bacteria 6120
67 Ga0207705_10089795 3300025909 Bacteria 2249
68 Ga0207707_10028474 3300025912 Bacteria 4883
69 Ga0207693_10007815 3300025915 Bacteria 8779
70 Ga0207693_10012593 3300025915 Bacteria 6833
71 Ga0207657_10008519 3300025919 Bacteria 10397
72 Ga0207652_10009435 3300025921 Bacteria 7848
73 Ga0207646_10002517 3300025922 Bacteria 21650
74 Ga0207694_10034301 3300025924 Bacteria 3891
75 Ga0207687_10032891 3300025927 Bacteria 3515
76 Ga0207700_10120781 3300025928 Bacteria 2124
77 Ga0207664_10330589 3300025929 Bacteria 1346
78 Ga0207690_10088657 3300025932 Bacteria 2180
79 Ga0207709_10053721 3300025935 Bacteria 2480
80 Ga0207665_10033259 3300025939 Bacteria 3416
81 Ga0207661_10003960 3300025944 Bacteria 10343
82 Ga0207651_10264039 3300025960 Bacteria 1415
83 Ga0207640_10142787 3300025981 Bacteria 1747
84 Ga0207677_10100809 3300026023 Bacteria 2124
85 Ga0207702_10053722 3300026078 Bacteria 3411
86 Ga0207674_10058321 3300026116 Bacteria 3912
87 Ga0207675_100008551 3300026118 Bacteria 9628
88 Ga0207683_10008796 3300026121 Bacteria 8618
89 Ga0207698_10075697 3300026142 Bacteria 2691
90 Ga0207428_10030747 3300027907 Bacteria 4437
91 Ga0307413_10337847 3300031824 Bacteria 1157
92 Ga0373941_0034924 3300035115 Bacteria 1520
93 Ga0373956_0115436 3300035119 Bacteria 1252
94 Ga0373960_0007096 3300035121 Bacteria 2645
95 Ga0373931_0008729 3300035691 Bacteria 4823
96 Ga0373947_0087742 3300035725 Bacteria 1935
97 Ga0373925_0345731 3300037068 Bacteria 1207
98 Ga0395900_0008054 3300037418 Bacteria 10847
99 Ga0395898_0006651 3300037466 Bacteria 12328
100 Ga0395898_0018003 3300037466 Bacteria 7208
101 Ga0395898_0062707 3300037466 Bacteria 3610
102 Ga0436364_0296542 3300037853 Bacteria 10774
103 Ga0436364_0587612 3300037853 Bacteria 11763
104 Ga0436364_1048478 3300037853 Bacteria 2116
105 Ga0395901_0003275 3300038443 Bacteria 16304
106 Ga0436365_0470928 3300039437 Bacteria 5508
107 Ga0436365_0957402 3300039437 Bacteria 1481
108 Ga0436365_1068838 3300039437 Bacteria 1752
109 Ga0436365_1428759 3300039437 Bacteria 1458
110 Ga0466965_0018595 3300044683 Unclassified 3333
111 Ga0466966_0025543 3300044684 Bacteria 3857
112 Ga0466966_0223865 3300044684 Bacteria 1135
113 Ga0466961_0002572 3300044693 Bacteria 11247
114 Ga0466961_0015464 3300044693 Bacteria 4897
115 Ga0466961_0016225 3300044693 Bacteria 4783
116 Ga0466961_0214760 3300044693 Bacteria 1187
117 Ga0466963_0000181 3300044694 Bacteria 26161
118 Ga0466963_0068297 3300044694 Bacteria 2387
119 Ga0466963_0077067 3300044694 Bacteria 2252
120 Ga0466971_0003044 3300044719 Bacteria 7124
121 Ga0466971_0166858 3300044719 Bacteria 1032
122 Ga0466970_0040610 3300044765 Bacteria 2471
123 Ga0466957_0012932 3300044842 Bacteria 4836
124 Ga0466957_0096687 3300044842 Bacteria 1856
125 Ga0466960_0004866 3300044901 Bacteria 5280
126 Ga0466959_0005984 3300045049 Bacteria 8394
127 Ga0466959_0022694 3300045049 Bacteria 4640
128 Ga0466959_0038194 3300045049 Bacteria 3548
129 Ga0466958_0003785 3300045836 Bacteria 7897
130 Ga0466958_0018112 3300045836 Bacteria 4081
131 Ga0466958_0051713 3300045836 Bacteria 2488
132 Ga0466967_0001404 3300045976 Bacteria 13923
133 Ga0466967_0051959 3300045976 Bacteria 3595
134 Ga0466967_0099971 3300045976 Bacteria 2650
135 Ga0466967_0127652 3300045976 Bacteria 2357
136 Ga0466967_0347804 3300045976 Bacteria 1434
137 Ga0466967_0384420 3300045976 Bacteria 1363
138 Ga0495592_0020690 3300046454 Bacteria 5006
139 Ga0495603_0081122 3300046455 Bacteria 1901
140 Ga0495641_0027870 3300046461 Bacteria 2740
141 Ga0495651_0012795 3300046462 Bacteria 6478
142 Ga0495582_0075992 3300046473 Bacteria 1861
143 Ga0495608_0021066 3300046511 Bacteria 4477
144 Ga0495618_0015746 3300046514 Bacteria 4616
145 Ga0495652_0013959 3300046529 Bacteria 7221
146 Ga0495665_0135038 3300046531 Bacteria 1291
147 Ga0495645_0300696 3300046543 Bacteria 1048
148 Ga0495656_0012821 3300046615 Bacteria 3104
149 Ga0495588_0119234 3300046674 Bacteria 1391
150 Ga0495657_0018596 3300046675 Bacteria 5023
151 Ga0495646_0072558 3300046680 Bacteria 2024
152 Ga0495600_0169513 3300046809 Bacteria 1409
153 Ga0495581_0125589 3300047315 Bacteria 1494
154 Ga0495604_0058333 3300047317 Bacteria 2964
155 Ga0495674_0044259 3300047319 Bacteria 3958
156 Ga0495676_0083783 3300047321 Bacteria 2408
157 Ga0495593_0084822 3300047673 Bacteria 1635
158 Ga0496100_0040495 3300048903 Bacteria 2965
159 Ga0496101_0131514 3300048904 Bacteria 1900
160 Ga0496102_0038771 3300048905 Bacteria 4302
161 Ga0496104_0065685 3300048907 Bacteria 3443
162 Ga0496104_0096993 3300048907 Bacteria 2821
163 Ga0496104_0174758 3300048907 Bacteria 2058
164 Ga0496105_0098973 3300048908 Bacteria 2408
165 Ga0496106_0051438 3300048909 Bacteria 3106
166 Ga0496107_0084156 3300048910 Bacteria 2320
167 Ga0496109_0089691 3300048912 Bacteria 2843
168 Ga0496110_0353523 3300048913 Bacteria 1338
169 Ga0496111_0114888 3300048914 Bacteria 1984
170 Ga0496111_0147567 3300048914 Bacteria 1744
171 Ga0496112_0009608 3300048915 Bacteria 8723
172 Ga0496112_0240124 3300048915 Bacteria 1765
173 Ga0496113_0011702 3300048916 Bacteria 5869
174 Ga0496114_0031567 3300048917 Bacteria 4358
175 Ga0496115_0043930 3300048918 Bacteria 3563
176 Ga0496115_0195856 3300048918 Bacteria 1670
177 Ga0501040_0098036 3300049576 Bacteria 2043
178 Ga0501041_0096582 3300049577 Bacteria 1827
179 Ga0501042_0151414 3300049578 Bacteria 1673
180 Ga0501072_0120388 3300049588 Bacteria 2091
181 nmdc:mga0yw44_34148_c1 3300050492 Bacteria 2978
182 nmdc:mga05p37_105035_c1 3300050507 Bacteria 3475
183 nmdc:mga05p37_132570_c1 3300050507 Bacteria 3057
184 nmdc:mga05p37_67857_c1 3300050507 Bacteria 4387
185 nmdc:mga05p37_7748_c1 3300050507 Bacteria 12674
186 nmdc:mga09592_19939_c1 3300050508 Bacteria 5508
187 nmdc:mga09592_5056_c1 3300050508 Bacteria 10702
188 nmdc:mga0qj67_27502_c1 3300050509 Bacteria 4410
189 nmdc:mga0qj67_54108_c1 3300050509 Bacteria 3178
190 nmdc:mga06r32_27917_c1 3300050510 Bacteria 5279
191 nmdc:mga06r32_55359_c1 3300050510 Bacteria 3805
192 nmdc:mga06r32_71014_c1 3300050510 Bacteria 3368
193 nmdc:mga08y16_83749_c1 3300050511 Bacteria 3324
194 nmdc:mga08y16_90085_c1 3300050511 Bacteria 3197
195 nmdc:mga0n895_20964_c1 3300050512 Bacteria 6104
196 nmdc:mga08x19_245449_c1 3300050514 Bacteria 1235
197 Ga0495619_0104517 3300053085 Bacteria 1930
198 Ga0070679_100184384
199 Ga0070683_100001254
200 Ga0070680_100001595
201 Ga0070682_100069766
202 Ga0068868_100012019
203 Ga0070660_100088842
204 Ga0070674_100160828
205 Ga0070673_100337062
206 Ga0070659_100001987
207 Ga0070714_100094341
208 Ga0070714_100175645
209 Ga0070714_100225906
210 Ga0070713_100085665
211 Ga0070678_100009329
212 Ga0070662_100009067
213 Ga0070681_10024904
214 Ga0070707_100005861
215 Ga0070684_100184670
216 Ga0068857_100051051
217 Ga0068854_100026328
218 Ga0068856_100028649
219 Ga0068852_100033842
220 Ga0068861_100017196
221 Ga0081540_1000993
222 Ga0081539_10017027
223 Ga0070717_10102600
224 Ga0070717_10163784
225 Ga0075365_10002462
226 Ga0075432_10013263
227 Ga0070715_10068115
228 Ga0070715_10099050
229 Ga0070712_100024984
230 Ga0070712_100026219
231 Ga0075428_100015318
232 Ga0075428_100075895
233 Ga0075428_100086598
234 Ga0075430_100017108
235 Ga0075430_100112466
236 Ga0075431_100003415
237 Ga0075431_100015661
238 Ga0075429_100000428
239 Ga0075429_100019918
240 Ga0105240_10076415
241 Ga0111539_10005468
242 Ga0111539_10042150
243 Ga0111539_10104853
244 Ga0111539_10118359
245 Ga0105245_10057724
246 Ga0114129_10003681
247 Ga0114129_10008507
248 Ga0114129_10101207
249 Ga0105248_10237776
250 Ga0105238_10046474
251 Ga0105249_10263319
252 Ga0105239_10080228
253 Ga0105239_10083406
254 Ga0157370_10005324
255 Ga0157369_10003714
256 Ga0157378_10113793
257 Ga0157372_10059699
258 Ga0213876_10071060
259 Ga0213875_10004409
260 Ga0213875_10069902
261 Ga0207692_10039737
262 Ga0207688_10037835
263 Ga0207699_10005405
264 Ga0207705_10089795
265 Ga0207707_10028474
266 Ga0207693_10007815
267 Ga0207693_10012593
268 Ga0207657_10008519
269 Ga0207652_10009435
270 Ga0207646_10002517
271 Ga0207694_10034301
272 Ga0207687_10032891
273 Ga0207700_10120781
274 Ga0207664_10330589
275 Ga0207690_10088657
276 Ga0207709_10053721
277 Ga0207665_10033259
278 Ga0207661_10003960
279 Ga0207651_10264039
280 Ga0207640_10142787
281 Ga0207677_10100809
282 Ga0207702_10053722
283 Ga0207674_10058321
284 Ga0207675_100008551
285 Ga0207683_10008796
286 Ga0207698_10075697
287 Ga0207428_10030747
288 Ga0307413_10337847
289 Ga0373941_0034924
290 Ga0373956_0115436
291 Ga0373960_0007096
292 Ga0373931_0008729
293 Ga0373947_0087742
294 Ga0373925_0345731
295 Ga0395900_0008054
296 Ga0395898_0006651
297 Ga0395898_0018003
298 Ga0395898_0062707
299 Ga0436364_0296542
300 Ga0436364_0587612
301 Ga0436364_1048478
302 Ga0395901_0003275
303 Ga0436365_0470928
304 Ga0436365_0957402
305 Ga0436365_1068838
306 Ga0436365_1428759
307 Ga0466965_0018595
308 Ga0466966_0025543
309 Ga0466966_0223865
310 Ga0466961_0002572
311 Ga0466961_0015464
312 Ga0466961_0016225
313 Ga0466961_0214760
314 Ga0466963_0000181
315 Ga0466963_0068297
316 Ga0466963_0077067
317 Ga0466971_0003044
318 Ga0466971_0166858
319 Ga0466970_0040610
320 Ga0466957_0012932
321 Ga0466957_0096687
322 Ga0466960_0004866
323 Ga0466959_0005984
324 Ga0466959_0022694
325 Ga0466959_0038194
326 Ga0466958_0003785
327 Ga0466958_0018112
328 Ga0466958_0051713
329 Ga0466967_0001404
330 Ga0466967_0051959
331 Ga0466967_0099971
332 Ga0466967_0127652
333 Ga0466967_0347804
334 Ga0466967_0384420
335 Ga0495592_0020690
336 Ga0495603_0081122
337 Ga0495641_0027870
338 Ga0495651_0012795
339 Ga0495582_0075992
340 Ga0495608_0021066
341 Ga0495618_0015746
342 Ga0495652_0013959
343 Ga0495665_0135038
344 Ga0495645_0300696
345 Ga0495656_0012821
346 Ga0495588_0119234
347 Ga0495657_0018596
348 Ga0495646_0072558
349 Ga0495600_0169513
350 Ga0495581_0125589
351 Ga0495604_0058333
352 Ga0495674_0044259
353 Ga0495676_0083783
354 Ga0495593_0084822
355 Ga0496100_0040495
356 Ga0496101_0131514
357 Ga0496102_0038771
358 Ga0496104_0065685
359 Ga0496104_0096993
360 Ga0496104_0174758
361 Ga0496105_0098973
362 Ga0496106_0051438
363 Ga0496107_0084156
364 Ga0496109_0089691
365 Ga0496110_0353523
366 Ga0496111_0114888
367 Ga0496111_0147567
368 Ga0496112_0009608
369 Ga0496112_0240124
370 Ga0496113_0011702
371 Ga0496114_0031567
372 Ga0496115_0043930
373 Ga0496115_0195856
374 Ga0501040_0098036
375 Ga0501041_0096582
376 Ga0501042_0151414
377 Ga0501072_0120388
378 nmdc:mga0yw44_34148_c1
379 nmdc:mga05p37_105035_c1
380 nmdc:mga05p37_132570_c1
381 nmdc:mga05p37_67857_c1
382 nmdc:mga05p37_7748_c1
383 nmdc:mga09592_19939_c1
384 nmdc:mga09592_5056_c1
385 nmdc:mga0qj67_27502_c1
386 nmdc:mga0qj67_54108_c1
387 nmdc:mga06r32_27917_c1
388 nmdc:mga06r32_55359_c1
389 nmdc:mga06r32_71014_c1
390 nmdc:mga08y16_83749_c1
391 nmdc:mga08y16_90085_c1
392 nmdc:mga0n895_20964_c1
393 nmdc:mga08x19_245449_c1
394 Ga0495619_0104517

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

30

98

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

152

192

0.94

PF12680

SnoaL_2

SnoaL-like domain

216

314

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4lup-assembly2.cif.gz_C crystal structure of the complex formed by region of e. coli sigmae bound to its -10 element non template strand 0.9208 9 93
5or5-assembly1.cif.gz_A nmr structure of the complex formed by an engineered region 2 of sigmae in complex with gtaaaa 0.8816 12 99
2mao-assembly1.cif.gz_A nmr structure of region 2 of e. coli sigmae 0.8585 7 94
5tph-assembly1.cif.gz_A crystal structure of a de novo designed protein homodimer with curved beta-sheet 0.8274 208 318
4lup-assembly2.cif.gz_C crystal structure of the complex formed by region of e. coli sigmae bound to its -10 element non template strand 0.8202 9 93
ID Description Score Start End Superfamily
4lupA00 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9354 12 93 1.10.1740.10
af_P9WGH7_10_94_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9218 11 93 1.10.1740.10
4lupC00 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9209 9 93 1.10.1740.10
2mapA00 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.8971 7 93 1.10.1740.10
af_P9WGH7_10_94_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.8916 11 93 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A382T5A7-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.9533 12 91 GO:0006352
GO:0016987
AF-A0A7X0KE13-F1-model_v4 deleted 0.9456 216 357
AF-A0A7C5N5G2-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.9349 6 95 GO:0006352
GO:0016987
AF-A0A2M7ZFA9-F1-model_v4 RNA polymerase sigma-70 region 2 domain-containing protein 0.9264 7 93 GO:0006352
GO:0016987
AF-A0A495X6K7-F1-model_v4 RNA polymerase sigma-70 factor (ECF subfamily) 0.9192 228 356

Map