F302089

General Info

Members Datasets Scaffolds Average Seq Length
196 138 392 205

Family's Representative Sequence

Representative Sequence 3300048917|Ga0496114_0059688|Ga0496114_0059688_227_889
Length 220
Sequence MAVLAGGAGGLAVRPGEALMRYPADIRASLVPTVVEQTHRGERGWDLFSRLLKDRIVFLGTPIDDAVANVIVAQLLFLESEDPDKDVMMYVNSPGGEVTAGLAIYDTMQALRCPVATFCVGQAASMASFLLAAGAKGKRSALPHARVMIHQPLAGLEGQATDIEIHAREILKARDTINGLYARHTGQPVDKIKRDTERDNFMSAEEARDYGLVDHVLAGR

Samples

Sample ID Description Type Environment
1 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
26 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
27 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
41 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
42 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
43 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
64 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
65 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
66 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
67 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
68 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
69 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
70 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
71 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
72 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
73 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
74 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
75 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
76 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
77 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
78 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
79 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
80 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
81 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
82 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
83 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
84 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
85 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
86 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
89 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
90 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
91 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
92 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
93 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
94 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
95 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
96 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
99 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
100 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
101 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
102 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
103 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
104 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
105 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
106 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
115 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
116 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
117 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
118 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
119 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
120 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
121 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
122 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
123 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
126 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
129 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
130 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
131 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
132 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
133 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
134 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
135 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
136 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
137 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
138 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.08
Nodule 0
Rhizoplane 5.1
Rhizosphere 87.24
Stem 0
Stem Tuber 0
Unclassified 1.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496114_0059688 3300048917 Bacteria 3187
2 Ga0070683_100029654 3300005329 Bacteria 4957
3 Ga0070683_100695761 3300005329 Bacteria 973
4 Ga0070690_100003144 3300005330 Bacteria 8989
5 Ga0068869_100146050 3300005334 Bacteria 1831
6 Ga0070680_100193551 3300005336 Bacteria 1714
7 Ga0068868_100378130 3300005338 Bacteria 1218
8 Ga0068868_100421291 3300005338 Bacteria 1156
9 Ga0070689_100000002 3300005340 Bacteria 695141
10 Ga0070689_100063676 3300005340 Bacteria 2869
11 Ga0070689_100296465 3300005340 Bacteria 1345
12 Ga0070689_100812888 3300005340 Bacteria 822
13 Ga0070687_100032892 3300005343 Bacteria 2555
14 Ga0070675_100044914 3300005354 Bacteria 3614
15 Ga0070673_100024264 3300005364 Bacteria 4444
16 Ga0070673_100037449 3300005364 Bacteria 3696
17 Ga0070673_100557990 3300005364 Bacteria 1041
18 Ga0070688_100005188 3300005365 Bacteria 6841
19 Ga0070659_100787683 3300005366 Bacteria 826
20 Ga0070667_100497579 3300005367 Bacteria 1117
21 Ga0070709_10157968 3300005434 Bacteria 1574
22 Ga0070678_100000699 3300005456 Bacteria 16596
23 Ga0070681_10113901 3300005458 Bacteria 2643
24 Ga0070685_10133484 3300005466 Bacteria 1555
25 Ga0070679_100154212 3300005530 Bacteria 2272
26 Ga0070679_101311584 3300005530 Bacteria 670
27 Ga0070684_100058180 3300005535 Bacteria 3377
28 Ga0070684_100618092 3300005535 Bacteria 1008
29 Ga0070672_100083887 3300005543 Bacteria 2558
30 Ga0070665_100390019 3300005548 Bacteria 1400
31 Ga0070664_100624987 3300005564 Bacteria 1000
32 Ga0068857_100019602 3300005577 Bacteria 5941
33 Ga0068856_100492382 3300005614 Bacteria 1247
34 Ga0068856_100553277 3300005614 Bacteria 1172
35 Ga0068859_100334501 3300005617 Bacteria 1608
36 Ga0068864_100620684 3300005618 Bacteria 1051
37 Ga0068866_10138055 3300005718 Unclassified 1396
38 Ga0068863_100031476 3300005841 Bacteria 5061
39 Ga0068863_100074588 3300005841 Bacteria 3210
40 Ga0068863_100327394 3300005841 Bacteria 1489
41 Ga0070717_10053498 3300006028 Bacteria 3328
42 Ga0075429_100023022 3300006880 Bacteria 5400
43 Ga0075429_100033502 3300006880 Bacteria 4465
44 Ga0097620_100334517 3300006931 Bacteria 1608
45 Ga0111539_10010988 3300009094 Bacteria 11398
46 Ga0105245_10000031 3300009098 Bacteria 151832
47 Ga0105243_10525174 3300009148 Unclassified 1126
48 Ga0105242_10358738 3300009176 Bacteria 1348
49 Ga0105237_10044326 3300009545 Bacteria 4478
50 Ga0105239_10566731 3300010375 Bacteria 1294
51 Ga0105239_10950801 3300010375 Bacteria 987
52 Ga0157374_10089384 3300013296 Bacteria 2935
53 Ga0157374_10168632 3300013296 Bacteria 2135
54 Ga0157375_10407198 3300013308 Bacteria 1527
55 Ga0163163_10955862 3300014325 Bacteria 920
56 Ga0157376_10550101 3300014969 Bacteria 1142
57 Ga0213876_10090104 3300021384 Bacteria 1624
58 Ga0207642_10087883 3300025899 Unclassified 1527
59 Ga0207707_10360820 3300025912 Bacteria 1251
60 Ga0207662_10004268 3300025918 Bacteria 7502
61 Ga0207662_10042703 3300025918 Bacteria 2673
62 Ga0207659_10061568 3300025926 Bacteria 2705
63 Ga0207687_10000496 3300025927 Bacteria 26540
64 Ga0207670_10000001 3300025936 Bacteria 949312
65 Ga0207670_10073161 3300025936 Bacteria 2376
66 Ga0207670_10686471 3300025936 Bacteria 847
67 Ga0207691_10045376 3300025940 Bacteria 4040
68 Ga0207691_10837259 3300025940 Bacteria 772
69 Ga0207711_10939391 3300025941 Bacteria 803
70 Ga0207661_10042953 3300025944 Bacteria 3566
71 Ga0207651_10004817 3300025960 Bacteria 6869
72 Ga0207651_10010101 3300025960 Bacteria 5211
73 Ga0207651_10087868 3300025960 Bacteria 2264
74 Ga0207651_10110057 3300025960 Bacteria 2066
75 Ga0207677_10364556 3300026023 Bacteria 1215
76 Ga0207708_10187989 3300026075 Bacteria 1643
77 Ga0207702_10059226 3300026078 Bacteria 3262
78 Ga0207641_10027528 3300026088 Bacteria 4696
79 Ga0207641_11015937 3300026088 Bacteria 826
80 Ga0207676_10084884 3300026095 Bacteria 2582
81 Ga0207683_10000719 3300026121 Bacteria 30101
82 Ga0207428_10015868 3300027907 Bacteria 6498
83 Ga0268266_11024734 3300028379 Bacteria 799
84 Ga0307517_10079767 3300028786 Bacteria 2812
85 Ga0265338_10002687 3300028800 Bacteria 26127
86 Ga0265332_10003223 3300031238 Bacteria 7942
87 Ga0265328_10002216 3300031239 Bacteria 8763
88 Ga0265320_10004416 3300031240 Bacteria 9226
89 Ga0265329_10087462 3300031242 Bacteria 988
90 Ga0265339_10027637 3300031249 Bacteria 3234
91 Ga0307509_10119530 3300031507 Bacteria 2616
92 Ga0307509_10145752 3300031507 Bacteria 2294
93 Ga0307509_10170176 3300031507 Bacteria 2059
94 Ga0265313_10027755 3300031595 Bacteria 2958
95 Ga0265314_10090595 3300031711 Bacteria 1992
96 Ga0265342_10001019 3300031712 Bacteria 27590
97 Ga0265342_10004247 3300031712 Bacteria 11353
98 Ga0265342_10016309 3300031712 Bacteria 4860
99 Ga0373949_0000334 3300035090 Bacteria 16739
100 Ga0373923_0361749 3300035111 Bacteria 694
101 Ga0373932_0133371 3300035112 Bacteria 839
102 Ga0373941_0007035 3300035115 Bacteria 2735
103 Ga0373956_0011608 3300035119 Bacteria 3632
104 Ga0373956_0016542 3300035119 Bacteria 3098
105 Ga0373957_0045582 3300035120 Bacteria 1662
106 Ga0373957_0077801 3300035120 Bacteria 1306
107 Ga0373943_0492930 3300035170 Bacteria 715
108 Ga0373955_0007384 3300035172 Bacteria 5051
109 Ga0373955_0306091 3300035172 Bacteria 959
110 Ga0373924_0275327 3300035410 Bacteria 746
111 Ga0373935_0103059 3300035692 Bacteria 1884
112 Ga0373935_0218193 3300035692 Bacteria 1324
113 Ga0373935_0722316 3300035692 Bacteria 733
114 Ga0373933_0008403 3300035724 Bacteria 5638
115 Ga0373933_0282186 3300035724 Bacteria 1073
116 Ga0373947_0077627 3300035725 Bacteria 2049
117 Ga0373937_0002983 3300036401 Bacteria 14173
118 Ga0373937_0004961 3300036401 Bacteria 11315
119 Ga0373937_0372397 3300036401 Bacteria 1354
120 Ga0373937_0664350 3300036401 Bacteria 988
121 Ga0395900_0750966 3300037418 Bacteria 906
122 Ga0436365_0570307 3300039437 Bacteria 3548
123 Ga0436365_1810034 3300039437 Bacteria 1668
124 Ga0466967_0489326 3300045976 Bacteria 1206
125 Ga0495629_0534989 3300046459 Bacteria 788
126 Ga0495618_0056558 3300046514 Bacteria 2484
127 Ga0495628_0065591 3300046516 Bacteria 2839
128 Ga0495652_0249211 3300046529 Bacteria 1317
129 Ga0495640_0197804 3300046533 Bacteria 1275
130 Ga0495586_0035242 3300046535 Bacteria 2688
131 Ga0495634_0008827 3300046642 Bacteria 7476
132 Ga0495635_0226276 3300046663 Bacteria 1264
133 Ga0495657_0179087 3300046675 Bacteria 1302
134 Ga0495674_0015056 3300047319 Bacteria 7238
135 Ga0495680_0323944 3300047322 Bacteria 1078
136 Ga0495684_0018273 3300047471 Bacteria 5404
137 Ga0496100_0005287 3300048903 Bacteria 6935
138 Ga0496101_0039808 3300048904 Bacteria 3345
139 Ga0496104_0668214 3300048907 Bacteria 947
140 Ga0496110_0308051 3300048913 Bacteria 1443
141 Ga0496112_0298431 3300048915 Bacteria 1557
142 Ga0496114_0001040 3300048917 Bacteria 20876
143 Ga0496114_0052206 3300048917 Bacteria 3406
144 Ga0496115_0025496 3300048918 Bacteria 4604
145 Ga0496115_0377730 3300048918 Bacteria 1153
146 Ga0501034_0000025 3300049571 Bacteria 262496
147 Ga0501034_0122531 3300049571 Bacteria 2586
148 Ga0501036_0053600 3300049572 Bacteria 3415
149 Ga0501036_0066940 3300049572 Bacteria 3039
150 Ga0501038_0261796 3300049574 Bacteria 1367
151 Ga0501042_0440237 3300049578 Bacteria 945
152 Ga0501043_0001539 3300049579 Bacteria 20094
153 Ga0501043_0114988 3300049579 Bacteria 2112
154 Ga0501046_0001311 3300049580 Bacteria 24110
155 Ga0501046_0199996 3300049580 Bacteria 1487
156 Ga0501047_0000038 3300049581 Bacteria 189296
157 Ga0501047_0019739 3300049581 Bacteria 6469
158 Ga0501047_0023018 3300049581 Bacteria 5981
159 Ga0501047_0268558 3300049581 Bacteria 1552
160 Ga0501048_0023518 3300049582 Bacteria 4501
161 Ga0501067_0031303 3300049583 Bacteria 2952
162 Ga0501068_0000934 3300049584 Bacteria 15302
163 Ga0501068_0069398 3300049584 Bacteria 2149
164 Ga0501069_0036042 3300049585 Bacteria 2727
165 Ga0501070_0006270 3300049586 Bacteria 10120
166 Ga0501070_0044283 3300049586 Bacteria 3704
167 Ga0501070_0050543 3300049586 Bacteria 3451
168 Ga0501070_0138034 3300049586 Bacteria 2013
169 Ga0501072_0000249 3300049588 Bacteria 39680
170 Ga0501073_0009743 3300049589 Bacteria 7073
171 Ga0501073_0056342 3300049589 Bacteria 2749
172 Ga0501073_0444457 3300049589 Bacteria 896
173 Ga0501074_0000519 3300049590 Bacteria 23706
174 Ga0501079_0000133 3300049741 Bacteria 40036
175 Ga0501079_0484015 3300049741 Bacteria 973
176 Ga0501080_0001219 3300049742 Bacteria 21354
177 Ga0501080_0006381 3300049742 Bacteria 10581
178 Ga0501083_0057844 3300049744 Bacteria 2595
179 Ga0501044_0048306 3300049823 Bacteria 4396
180 Ga0501044_0626099 3300049823 Bacteria 967
181 nmdc:mga09592_23653_c1 3300050508 Bacteria 5074
182 nmdc:mga09592_947544_c1 3300050508 Bacteria 722
183 nmdc:mga08y16_2537_c1 3300050511 Bacteria 18780
184 nmdc:mga0rr50_198914_c1 3300050513 Bacteria 1646
185 Ga0495619_0068108 3300053085 Bacteria 2377
186 Ga0500566_0137506 3300053094 Bacteria 1300
187 Ga0500597_006447 3300053120 Bacteria 3897
188 Ga0500642_0231179 3300053130 Bacteria 854
189 Ga0500588_0044902 3300053146 Bacteria 1351
190 Ga0500622_0194132 3300053156 Bacteria 928
191 Ga0500638_142659 3300053162 Bacteria 1074
192 Ga0500639_109270 3300053163 Bacteria 1348
193 Ga0500636_0064697 3300053177 Bacteria 2130
194 Ga0501084_0000218 3300054114 Bacteria 43924
195 Ga0501082_0001014 3300060353 Bacteria 24818
196 Ga0501082_0021484 3300060353 Bacteria 5566
197 Ga0496114_0059688
198 Ga0070683_100029654
199 Ga0070683_100695761
200 Ga0070690_100003144
201 Ga0068869_100146050
202 Ga0070680_100193551
203 Ga0068868_100378130
204 Ga0068868_100421291
205 Ga0070689_100000002
206 Ga0070689_100063676
207 Ga0070689_100296465
208 Ga0070689_100812888
209 Ga0070687_100032892
210 Ga0070675_100044914
211 Ga0070673_100024264
212 Ga0070673_100037449
213 Ga0070673_100557990
214 Ga0070688_100005188
215 Ga0070659_100787683
216 Ga0070667_100497579
217 Ga0070709_10157968
218 Ga0070678_100000699
219 Ga0070681_10113901
220 Ga0070685_10133484
221 Ga0070679_100154212
222 Ga0070679_101311584
223 Ga0070684_100058180
224 Ga0070684_100618092
225 Ga0070672_100083887
226 Ga0070665_100390019
227 Ga0070664_100624987
228 Ga0068857_100019602
229 Ga0068856_100492382
230 Ga0068856_100553277
231 Ga0068859_100334501
232 Ga0068864_100620684
233 Ga0068866_10138055
234 Ga0068863_100031476
235 Ga0068863_100074588
236 Ga0068863_100327394
237 Ga0070717_10053498
238 Ga0075429_100023022
239 Ga0075429_100033502
240 Ga0097620_100334517
241 Ga0111539_10010988
242 Ga0105245_10000031
243 Ga0105243_10525174
244 Ga0105242_10358738
245 Ga0105237_10044326
246 Ga0105239_10566731
247 Ga0105239_10950801
248 Ga0157374_10089384
249 Ga0157374_10168632
250 Ga0157375_10407198
251 Ga0163163_10955862
252 Ga0157376_10550101
253 Ga0213876_10090104
254 Ga0207642_10087883
255 Ga0207707_10360820
256 Ga0207662_10004268
257 Ga0207662_10042703
258 Ga0207659_10061568
259 Ga0207687_10000496
260 Ga0207670_10000001
261 Ga0207670_10073161
262 Ga0207670_10686471
263 Ga0207691_10045376
264 Ga0207691_10837259
265 Ga0207711_10939391
266 Ga0207661_10042953
267 Ga0207651_10004817
268 Ga0207651_10010101
269 Ga0207651_10087868
270 Ga0207651_10110057
271 Ga0207677_10364556
272 Ga0207708_10187989
273 Ga0207702_10059226
274 Ga0207641_10027528
275 Ga0207641_11015937
276 Ga0207676_10084884
277 Ga0207683_10000719
278 Ga0207428_10015868
279 Ga0268266_11024734
280 Ga0307517_10079767
281 Ga0265338_10002687
282 Ga0265332_10003223
283 Ga0265328_10002216
284 Ga0265320_10004416
285 Ga0265329_10087462
286 Ga0265339_10027637
287 Ga0307509_10119530
288 Ga0307509_10145752
289 Ga0307509_10170176
290 Ga0265313_10027755
291 Ga0265314_10090595
292 Ga0265342_10001019
293 Ga0265342_10004247
294 Ga0265342_10016309
295 Ga0373949_0000334
296 Ga0373923_0361749
297 Ga0373932_0133371
298 Ga0373941_0007035
299 Ga0373956_0011608
300 Ga0373956_0016542
301 Ga0373957_0045582
302 Ga0373957_0077801
303 Ga0373943_0492930
304 Ga0373955_0007384
305 Ga0373955_0306091
306 Ga0373924_0275327
307 Ga0373935_0103059
308 Ga0373935_0218193
309 Ga0373935_0722316
310 Ga0373933_0008403
311 Ga0373933_0282186
312 Ga0373947_0077627
313 Ga0373937_0002983
314 Ga0373937_0004961
315 Ga0373937_0372397
316 Ga0373937_0664350
317 Ga0395900_0750966
318 Ga0436365_0570307
319 Ga0436365_1810034
320 Ga0466967_0489326
321 Ga0495629_0534989
322 Ga0495618_0056558
323 Ga0495628_0065591
324 Ga0495652_0249211
325 Ga0495640_0197804
326 Ga0495586_0035242
327 Ga0495634_0008827
328 Ga0495635_0226276
329 Ga0495657_0179087
330 Ga0495674_0015056
331 Ga0495680_0323944
332 Ga0495684_0018273
333 Ga0496100_0005287
334 Ga0496101_0039808
335 Ga0496104_0668214
336 Ga0496110_0308051
337 Ga0496112_0298431
338 Ga0496114_0001040
339 Ga0496114_0052206
340 Ga0496115_0025496
341 Ga0496115_0377730
342 Ga0501034_0000025
343 Ga0501034_0122531
344 Ga0501036_0053600
345 Ga0501036_0066940
346 Ga0501038_0261796
347 Ga0501042_0440237
348 Ga0501043_0001539
349 Ga0501043_0114988
350 Ga0501046_0001311
351 Ga0501046_0199996
352 Ga0501047_0000038
353 Ga0501047_0019739
354 Ga0501047_0023018
355 Ga0501047_0268558
356 Ga0501048_0023518
357 Ga0501067_0031303
358 Ga0501068_0000934
359 Ga0501068_0069398
360 Ga0501069_0036042
361 Ga0501070_0006270
362 Ga0501070_0044283
363 Ga0501070_0050543
364 Ga0501070_0138034
365 Ga0501072_0000249
366 Ga0501073_0009743
367 Ga0501073_0056342
368 Ga0501073_0444457
369 Ga0501074_0000519
370 Ga0501079_0000133
371 Ga0501079_0484015
372 Ga0501080_0001219
373 Ga0501080_0006381
374 Ga0501083_0057844
375 Ga0501044_0048306
376 Ga0501044_0626099
377 nmdc:mga09592_23653_c1
378 nmdc:mga09592_947544_c1
379 nmdc:mga08y16_2537_c1
380 nmdc:mga0rr50_198914_c1
381 Ga0495619_0068108
382 Ga0500566_0137506
383 Ga0500597_006447
384 Ga0500642_0231179
385 Ga0500588_0044902
386 Ga0500622_0194132
387 Ga0500638_142659
388 Ga0500639_109270
389 Ga0500636_0064697
390 Ga0501084_0000218
391 Ga0501082_0001014
392 Ga0501082_0021484

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00574

CLP_protease

Clp protease

39

220

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hln-assembly2.cif.gz_T crystal structure of clpp a153c mutant with inter-heptamer disulfide bonds 0.9892 28 200
3hln-assembly2.cif.gz_1 crystal structure of clpp a153c mutant with inter-heptamer disulfide bonds 0.9885 28 200
7p81-assembly1.cif.gz_K crystal structure of clpp from bacillus subtilis in complex with adep2 (compact state) 0.9882 27 200
3hln-assembly1.cif.gz_F crystal structure of clpp a153c mutant with inter-heptamer disulfide bonds 0.9879 28 200
6dkf-assembly1.cif.gz_B caseinolytic protease (clpp) from staphylococcus aureus mutant - v7a 0.9871 29 200
ID Description Score Start End Superfamily
1y7oA00 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9641 13 202 3.90.226.10
1y7oA00 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9582 13 202 3.90.226.10
1yg8S00 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9494 28 203 3.90.226.10
af_Q2PMR0_6_196_3.90.226.10 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9304 14 200 3.90.226.10
af_Q9SAA2_76_271_3.90.226.10 Alpha Beta;Alpha-Beta Complex;2-enoyl-CoA Hydratase; Chain A, domain 1;2-enoyl-CoA Hydratase; Chain A, domain 1 0.9284 12 203 3.90.226.10
ID Description Score Start End GO Terms
AF-A0A5D2R4P3-F1-model_v4 ATP-dependent Clp protease proteolytic subunit 0.9971 32 123 GO:0004176
GO:0004252
GO:0006515
GO:0009368
GO:0009532
GO:0051117
AF-A0A0K2R3M2-F1-model_v4 deleted 0.9947 29 123
AF-C6TL65-F1-model_v4 ATP-dependent Clp protease proteolytic subunit 0.9912 29 129 GO:0004176
GO:0004252
GO:0006508
GO:0009532
AF-G1C6I0-F1-model_v4 ATP-dependent Clp protease proteolytic subunit 0.9898 32 110 GO:0004176
GO:0004252
GO:0006515
GO:0009368
GO:0009507
GO:0051117
AF-A0A2Z6P473-F1-model_v4 ATP-dependent Clp protease proteolytic subunit 0.9877 31 103 GO:0004176
GO:0004252
GO:0006515
GO:0009368
GO:0009532
GO:0051117

Map