F301902

General Info

Members Datasets Scaffolds Average Seq Length
196 144 392 289

Family's Representative Sequence

Representative Sequence 3300042007|Ga0439449_0002759|Ga0439449_0002759_5146_6057
Length 303
Sequence MDQSCSVLVVTQESVAENVAVNGSRRSSPQEIADSLRERIRAGDLKPGDRLPTQAELAEEFGVERGVVRQALRVLQEDGLLTNVSKGSPPRIAAPVPARGEPQPTMVGLAPRLTEAFSAPRVRVDVVCHTAETLMVAIGEPLRLIHEGRIHPEAIDVRILVPSRDIELAFPVPVEAHGDDNPVHQRWLSMRNAQGQVLQHNLRTLRSTHGIDVHVTFRALPFTPPVKLYLLNEEEALMGYYMLTRRAEEWGSQTLDMYDVLGSRSLLFSFVKRAGRRDAAFVEESQKWFNALWETITTDLTLS

Samples

Sample ID Description Type Environment
1 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
9 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
11 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
12 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
13 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
14 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
15 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
16 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
17 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
18 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
19 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
20 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
28 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
29 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
30 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
31 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
32 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
33 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
34 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
35 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
36 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
37 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
38 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
39 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
40 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
41 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
42 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
43 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
44 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
45 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
46 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
47 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
48 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
49 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
50 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
51 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
52 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
53 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
54 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
55 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
56 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
57 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
58 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
59 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
60 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
61 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
62 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
63 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
64 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
65 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
66 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
67 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
68 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
69 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
70 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
71 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
72 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
73 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
74 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
75 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
76 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
77 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
78 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
79 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
80 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
81 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
82 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
83 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
84 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
85 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
86 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
87 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
88 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
89 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
90 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
91 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
92 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
93 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
102 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
103 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
105 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
106 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
107 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
108 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
109 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
110 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
111 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
112 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
113 2643221714 Streptomyces sp. Root264 Isolate Unclassified
114 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
115 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
116 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
117 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
118 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
119 2808606448 Streptomyces sp. 193411 Isolate Unclassified
120 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
121 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
122 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
123 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
124 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
125 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
126 2862574272 Streptomyces sp. AcE210 Isolate Nodule
127 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
128 2867428634 Streptomyces sp. RP5T Isolate Unclassified
129 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
130 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
131 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
132 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
133 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
134 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
135 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
136 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
137 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
138 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
139 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
140 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
141 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
142 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
143 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
144 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.61
Metatranscriptomes 1.02
Isolates 18.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.06
Nodule 1.53
Rhizoplane 0.51
Rhizosphere 71.94
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439449_0002759 3300042007 Bacteria 6834
2 JGI24737J22298_10020205 3300001990 Bacteria 2127
3 rootH1_10044143 3300003316 Bacteria 8087
4 rootH2_10026961 3300003320 Bacteria 5539
5 rootL2_10114923 3300003322 Bacteria 1913
6 rootH1_10010360 3300003323 Bacteria 9570
7 Ga0006562J51391_1131943 3300003578 Bacteria 5960
8 Ga0006562J51391_1131945 3300003578 Bacteria 2840
9 Ga0070672_100196889 3300005543 Bacteria 1684
10 Ga0081539_10107705 3300005985 Bacteria 1409
11 Ga0075365_10068129 3300006038 Bacteria 2391
12 Ga0075363_100011686 3300006048 Bacteria 4212
13 Ga0075367_10009119 3300006178 Bacteria 5171
14 Ga0105245_10124971 3300009098 Bacteria 2407
15 Ga0105243_10047041 3300009148 Bacteria 3395
16 Ga0105246_10189017 3300011119 Bacteria 1593
17 Ga0157372_10142319 3300013307 Bacteria 2764
18 Ga0182008_10005008 3300014497 Bacteria 7624
19 Ga0182007_10003140 3300015262 Bacteria 7939
20 Ga0183367_1005 3300015688 Bacteria 652063
21 Ga0207655_1076624 3300025728 Bacteria 1222
22 Ga0207713_1086239 3300025735 Bacteria 1115
23 Ga0207647_10022602 3300025904 Bacteria 4174
24 Ga0207687_10168706 3300025927 Bacteria 1686
25 Ga0207709_10030479 3300025935 Bacteria 3138
26 Ga0207691_10094495 3300025940 Bacteria 2675
27 Ga0209371_1021591 3300027312 Bacteria 1556
28 Ga0307515_10047038 3300028794 Bacteria 6575
29 Ga0307511_10003532 3300030521 Bacteria 16057
30 Ga0307511_10048197 3300030521 Bacteria 3470
31 Ga0307512_10003998 3300030522 Bacteria 16470
32 Ga0307512_10063748 3300030522 Bacteria 2813
33 Ga0307513_10007043 3300031456 Bacteria 14627
34 Ga0307509_10008949 3300031507 Bacteria 12623
35 Ga0307509_10010098 3300031507 Bacteria 11638
36 Ga0307508_10052786 3300031616 Bacteria 3609
37 Ga0307514_10007468 3300031649 Bacteria 9419
38 Ga0307514_10014189 3300031649 Bacteria 6601
39 Ga0307516_10004356 3300031730 Bacteria 17506
40 Ga0307516_10110838 3300031730 Bacteria 2547
41 Ga0307518_10095384 3300031838 Bacteria 2136
42 Ga0307507_10061249 3300033179 Bacteria 3505
43 Ga0307510_10002698 3300033180 Bacteria 20297
44 Ga0307510_10017502 3300033180 Bacteria 8448
45 Ga0307510_10025861 3300033180 Bacteria 6763
46 Ga0395900_0076853 3300037418 Bacteria 3431
47 Ga0395898_0001874 3300037466 Bacteria 26874
48 Ga0395898_0004814 3300037466 Bacteria 14688
49 Ga0395898_0137631 3300037466 Bacteria 2338
50 Ga0439436_0000155 3300041404 Bacteria 15924
51 Ga0439436_0000339 3300041404 Bacteria 11549
52 Ga0439439_0017847 3300041406 Bacteria 1749
53 Ga0439439_0038338 3300041406 Bacteria 1237
54 Ga0451837_0545962 3300041494 Bacteria 2033
55 Ga0451853_2656855 3300041512 Bacteria 3178
56 Ga0451853_2990306 3300041512 Bacteria 2737
57 Ga0451853_3245345 3300041512 Bacteria 2795
58 Ga0439433_0007452 3300041999 Bacteria 2363
59 Ga0439433_0008615 3300041999 Bacteria 2214
60 Ga0439449_0001003 3300042007 Bacteria 11113
61 Ga0439457_001155 3300042014 Bacteria 7935
62 Ga0439457_006328 3300042014 Bacteria 2909
63 Ga0450894_000216 3300042131 Bacteria 10329
64 Ga0450898_015983 3300042134 Bacteria 1276
65 Ga0450899_000055 3300042135 Bacteria 9029
66 Ga0450908_007715 3300042184 Bacteria 2025
67 Ga0466972_0023862 3300044658 Bacteria 3039
68 Ga0466972_0025102 3300044658 Bacteria 2956
69 Ga0466965_0034438 3300044683 Bacteria 2478
70 Ga0466966_0007199 3300044684 Bacteria 7373
71 Ga0466961_0001003 3300044693 Bacteria 17422
72 Ga0466961_0076614 3300044693 Bacteria 2119
73 Ga0466963_0000260 3300044694 Bacteria 23211
74 Ga0466964_0000312 3300044706 Bacteria 14359
75 Ga0466971_0005414 3300044719 Bacteria 5536
76 Ga0466971_0010947 3300044719 Bacteria 3968
77 Ga0466970_0000472 3300044765 Bacteria 19918
78 Ga0466970_0005913 3300044765 Bacteria 6096
79 Ga0466957_0002000 3300044842 Bacteria 10853
80 Ga0466960_0004008 3300044901 Bacteria 5726
81 Ga0466959_0002699 3300045049 Bacteria 11398
82 Ga0466958_0001045 3300045836 Bacteria 12669
83 Ga0466958_0083114 3300045836 Bacteria 1973
84 Ga0466967_0000141 3300045976 Bacteria 27898
85 Ga0466967_0080320 3300045976 Bacteria 2942
86 Ga0495603_0001171 3300046455 Bacteria 15280
87 Ga0495603_0060472 3300046455 Bacteria 2238
88 Ga0495629_0135122 3300046459 Bacteria 1717
89 Ga0495651_0101101 3300046462 Bacteria 2146
90 Ga0495582_0024970 3300046473 Bacteria 3273
91 Ga0495662_0000568 3300046476 Bacteria 16984
92 Ga0495662_0002523 3300046476 Bacteria 9229
93 Ga0495585_0042589 3300046492 Bacteria 2542
94 Ga0495594_0003449 3300046499 Bacteria 8163
95 Ga0495594_0217919 3300046499 Bacteria 1088
96 Ga0495652_0027118 3300046529 Bacteria 5050
97 Ga0495609_0028453 3300046538 Bacteria 2550
98 Ga0495634_0004986 3300046642 Bacteria 10256
99 Ga0495634_0141755 3300046642 Bacteria 1525
100 Ga0495625_0006786 3300046660 Bacteria 10119
101 Ga0495625_0048722 3300046660 Bacteria 3049
102 Ga0495635_0044718 3300046663 Bacteria 3054
103 Ga0495635_0130996 3300046663 Bacteria 1709
104 Ga0495657_0001948 3300046675 Bacteria 17618
105 Ga0495657_0026258 3300046675 Bacteria 4124
106 Ga0495623_0037551 3300046679 Bacteria 3099
107 Ga0495613_0004048 3300046689 Bacteria 10964
108 Ga0495613_0014565 3300046689 Bacteria 5832
109 Ga0495670_0030616 3300046691 Bacteria 2673
110 Ga0495649_0014542 3300046694 Bacteria 4507
111 Ga0495589_0005684 3300046794 Bacteria 6575
112 Ga0495589_0016126 3300046794 Bacteria 3838
113 Ga0495589_0051003 3300046794 Bacteria 2046
114 Ga0495600_0017809 3300046809 Bacteria 4521
115 Ga0495604_0000281 3300047317 Bacteria 45474
116 Ga0495604_0179375 3300047317 Bacteria 1483
117 Ga0495636_0021314 3300047318 Bacteria 2617
118 Ga0495636_0105013 3300047318 Bacteria 1238
119 Ga0495674_0121505 3300047319 Bacteria 2206
120 Ga0495676_0082843 3300047321 Bacteria 2426
121 Ga0495676_0109599 3300047321 Bacteria 2028
122 Ga0495680_0004961 3300047322 Bacteria 12584
123 Ga0495687_003738 3300047443 Bacteria 10774
124 Ga0495687_061650 3300047443 Bacteria 1542
125 Ga0495685_006255 3300047447 Bacteria 3893
126 Ga0495686_0115267 3300047472 Bacteria 1607
127 Ga0495593_0029293 3300047673 Bacteria 3019
128 Ga0495602_0137900 3300048088 Bacteria 1935
129 Ga0495602_0222363 3300048088 Bacteria 1424
130 Ga0496109_0009429 3300048912 Bacteria 8320
131 Ga0501033_0013054 3300049570 Bacteria 6332
132 Ga0501033_0048103 3300049570 Bacteria 3168
133 Ga0501034_0003715 3300049571 Bacteria 17231
134 Ga0501034_0005896 3300049571 Bacteria 13302
135 Ga0501036_0001300 3300049572 Bacteria 19128
136 Ga0501036_0006674 3300049572 Bacteria 9381
137 Ga0501036_0279542 3300049572 Bacteria 1397
138 Ga0501038_0001829 3300049574 Bacteria 19695
139 Ga0501038_0017872 3300049574 Bacteria 6406
140 Ga0501038_0036634 3300049574 Bacteria 4304
141 Ga0501039_0003703 3300049575 Bacteria 11471
142 Ga0501043_0006716 3300049579 Bacteria 9188
143 Ga0501046_0038566 3300049580 Bacteria 3832
144 Ga0501047_0010446 3300049581 Bacteria 8787
145 Ga0501047_0085794 3300049581 Bacteria 3025
146 Ga0501070_0002065 3300049586 Bacteria 17650
147 Ga0501074_0000323 3300049590 Bacteria 27767
148 Ga0501035_0000268 3300049822 Bacteria 61655
149 Ga0501035_0092868 3300049822 Bacteria 2655
150 Ga0501035_0099478 3300049822 Bacteria 2553
151 Ga0501035_0155371 3300049822 Bacteria 1983
152 Ga0501044_0015521 3300049823 Bacteria 8205
153 Ga0501044_0020844 3300049823 Bacteria 6997
154 Ga0501044_0060998 3300049823 Bacteria 3859
155 Ga0501044_0070869 3300049823 Bacteria 3545
156 nmdc:mga03n38_4473_c1 3300050490 Bacteria 4639
157 nmdc:mga06z11_5258_c1 3300050494 Bacteria 5178
158 Ga0500650_0063296 3300053098 Bacteria 1728
159 Ga0466962_0000462 3300061719 Bacteria 17629
160 Ga0466962_0028262 3300061719 Bacteria 2687
161 2547408281 2547132111 Bacteria 8013147
162 2585310203 2582581313 Bacteria 10042643
163 2585313657 2582581314 Bacteria 11452267
164 2644437296 2643221678 Bacteria 9540101
165 2644629038 2643221714 Bacteria 9015452
166 2784588754 2784132148 Bacteria 8627943
167 2785343134 2784746763 Bacteria 9783172
168 2786670765 2786546132 Bacteria 10419719
169 2808842197 2808606359 Bacteria 9866990
170 2808920730 2808606375 Bacteria 9466072
171 2809232367 2808606448 Bacteria 8656184
172 2812357921 2811994879 Bacteria 9313447
173 2812480371 2811994917 Bacteria 7761064
174 2852636492 2852635781 Bacteria 8251373
175 2862285804 2862281513 Bacteria 9621493
176 2862388701 2862382967 Bacteria 10317375
177 2862511646 2862507626 Bacteria 9425308
178 2862579087 2862574272 Bacteria 10567477
179 2863404427 2863404153 Bacteria 9672205
180 2867436921 2867428634 Bacteria 9590268
181 2912731191 2912723979 Bacteria 8557534
182 2919469386 2919468124 Bacteria 9133025
183 2946067931 2946064051 Bacteria 8957905
184 2946076058 2946072368 Bacteria 8999607
185 2947229012 2947224130 Bacteria 9938529
186 2954007179 2954002825 Bacteria 9173742
187 2954677091 2954673503 Bacteria 9685905
188 2954687065 2954682443 Bacteria 9862841
189 2990065923 2990059506 Bacteria 9321252
190 3006394431 3006393351 Bacteria 6615579
191 3006500907 3006493962 Bacteria 8825450
192 8008567085 8008558824 Bacteria 10610750
193 8008578749 8008574985 Bacteria 7815457
194 8023627055 8023623736 Bacteria 8593882
195 8048412333 8048406513 Bacteria 8936924
196 8056833449 8056829672 Bacteria 9045328
197 Ga0439449_0002759
198 JGI24737J22298_10020205
199 rootH1_10044143
200 rootH2_10026961
201 rootL2_10114923
202 rootH1_10010360
203 Ga0006562J51391_1131943
204 Ga0006562J51391_1131945
205 Ga0070672_100196889
206 Ga0081539_10107705
207 Ga0075365_10068129
208 Ga0075363_100011686
209 Ga0075367_10009119
210 Ga0105245_10124971
211 Ga0105243_10047041
212 Ga0105246_10189017
213 Ga0157372_10142319
214 Ga0182008_10005008
215 Ga0182007_10003140
216 Ga0183367_1005
217 Ga0207655_1076624
218 Ga0207713_1086239
219 Ga0207647_10022602
220 Ga0207687_10168706
221 Ga0207709_10030479
222 Ga0207691_10094495
223 Ga0209371_1021591
224 Ga0307515_10047038
225 Ga0307511_10003532
226 Ga0307511_10048197
227 Ga0307512_10003998
228 Ga0307512_10063748
229 Ga0307513_10007043
230 Ga0307509_10008949
231 Ga0307509_10010098
232 Ga0307508_10052786
233 Ga0307514_10007468
234 Ga0307514_10014189
235 Ga0307516_10004356
236 Ga0307516_10110838
237 Ga0307518_10095384
238 Ga0307507_10061249
239 Ga0307510_10002698
240 Ga0307510_10017502
241 Ga0307510_10025861
242 Ga0395900_0076853
243 Ga0395898_0001874
244 Ga0395898_0004814
245 Ga0395898_0137631
246 Ga0439436_0000155
247 Ga0439436_0000339
248 Ga0439439_0017847
249 Ga0439439_0038338
250 Ga0451837_0545962
251 Ga0451853_2656855
252 Ga0451853_2990306
253 Ga0451853_3245345
254 Ga0439433_0007452
255 Ga0439433_0008615
256 Ga0439449_0001003
257 Ga0439457_001155
258 Ga0439457_006328
259 Ga0450894_000216
260 Ga0450898_015983
261 Ga0450899_000055
262 Ga0450908_007715
263 Ga0466972_0023862
264 Ga0466972_0025102
265 Ga0466965_0034438
266 Ga0466966_0007199
267 Ga0466961_0001003
268 Ga0466961_0076614
269 Ga0466963_0000260
270 Ga0466964_0000312
271 Ga0466971_0005414
272 Ga0466971_0010947
273 Ga0466970_0000472
274 Ga0466970_0005913
275 Ga0466957_0002000
276 Ga0466960_0004008
277 Ga0466959_0002699
278 Ga0466958_0001045
279 Ga0466958_0083114
280 Ga0466967_0000141
281 Ga0466967_0080320
282 Ga0495603_0001171
283 Ga0495603_0060472
284 Ga0495629_0135122
285 Ga0495651_0101101
286 Ga0495582_0024970
287 Ga0495662_0000568
288 Ga0495662_0002523
289 Ga0495585_0042589
290 Ga0495594_0003449
291 Ga0495594_0217919
292 Ga0495652_0027118
293 Ga0495609_0028453
294 Ga0495634_0004986
295 Ga0495634_0141755
296 Ga0495625_0006786
297 Ga0495625_0048722
298 Ga0495635_0044718
299 Ga0495635_0130996
300 Ga0495657_0001948
301 Ga0495657_0026258
302 Ga0495623_0037551
303 Ga0495613_0004048
304 Ga0495613_0014565
305 Ga0495670_0030616
306 Ga0495649_0014542
307 Ga0495589_0005684
308 Ga0495589_0016126
309 Ga0495589_0051003
310 Ga0495600_0017809
311 Ga0495604_0000281
312 Ga0495604_0179375
313 Ga0495636_0021314
314 Ga0495636_0105013
315 Ga0495674_0121505
316 Ga0495676_0082843
317 Ga0495676_0109599
318 Ga0495680_0004961
319 Ga0495687_003738
320 Ga0495687_061650
321 Ga0495685_006255
322 Ga0495686_0115267
323 Ga0495593_0029293
324 Ga0495602_0137900
325 Ga0495602_0222363
326 Ga0496109_0009429
327 Ga0501033_0013054
328 Ga0501033_0048103
329 Ga0501034_0003715
330 Ga0501034_0005896
331 Ga0501036_0001300
332 Ga0501036_0006674
333 Ga0501036_0279542
334 Ga0501038_0001829
335 Ga0501038_0017872
336 Ga0501038_0036634
337 Ga0501039_0003703
338 Ga0501043_0006716
339 Ga0501046_0038566
340 Ga0501047_0010446
341 Ga0501047_0085794
342 Ga0501070_0002065
343 Ga0501074_0000323
344 Ga0501035_0000268
345 Ga0501035_0092868
346 Ga0501035_0099478
347 Ga0501035_0155371
348 Ga0501044_0015521
349 Ga0501044_0020844
350 Ga0501044_0060998
351 Ga0501044_0070869
352 nmdc:mga03n38_4473_c1
353 nmdc:mga06z11_5258_c1
354 Ga0500650_0063296
355 Ga0466962_0000462
356 Ga0466962_0028262
357 2547408281
358 2585310203
359 2585313657
360 2644437296
361 2644629038
362 2784588754
363 2785343134
364 2786670765
365 2808842197
366 2808920730
367 2809232367
368 2812357921
369 2812480371
370 2852636492
371 2862285804
372 2862388701
373 2862511646
374 2862579087
375 2863404427
376 2867436921
377 2912731191
378 2919469386
379 2946067931
380 2946076058
381 2947229012
382 2954007179
383 2954677091
384 2954687065
385 2990065923
386 3006394431
387 3006500907
388 8008567085
389 8008578749
390 8023627055
391 8048412333
392 8056833449

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00392

GntR

Bacterial regulatory proteins, gntR family

29

88

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3tqn-assembly1.cif.gz_C structure of the transcriptional regulator of the gntr family, from coxiella burnetii. 0.9367 9 73
4egz-assembly1.cif.gz_B crystal structure of arar(dbd) in complex with operator orr3 0.9252 9 73
3edp-assembly1.cif.gz_B the crystal structure of the protein lin2111 (functionally unknown) from listeria innocua clip11262 0.91 9 72
7b5y-assembly1.cif.gz_D s. agalactiae busr in complex with its busab-promotor dna 0.9083 9 74
4r1h-assembly1.cif.gz_B gntr family transcriptional regulator from listeria monocytogenes 0.8928 3 75
ID Description Score Start End Superfamily
af_P39389_1_70_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9593 9 75 1.10.10.10
af_P45544_5_80_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9582 9 74 1.10.10.10
2wv0F01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9534 9 75 1.10.10.10
af_P0ACM2_11_76_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9474 9 72 1.10.10.10
2wv0E01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9431 9 75 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6G3AEU8-F1-model_v4 GntR family transcriptional regulator 0.962 83 284
AF-A0A6G3AEU8-F1-model_v4 GntR family transcriptional regulator 0.9574 83 284
AF-A0A1H3MTV3-F1-model_v4 GntR family transcriptional regulator 0.9544 3 74 GO:0003677
GO:0003700
GO:0045892
AF-A0A0R1H5H9-F1-model_v4 deleted 0.9486 9 79
AF-A0A845JQ71-F1-model_v4 GntR family transcriptional regulator 0.9482 9 79 GO:0003677
GO:0003700

Map