F300347

General Info

Members Datasets Scaffolds Average Seq Length
195 122 390 269

Family's Representative Sequence

Representative Sequence 3300032126|Ga0307415_100053847|Ga0307415_1000538472
Length 281
Sequence MPRFAAGLEYDGRAYAGWQFQPGLNTVQGALQRALSRVADTPVECVCAGRTDAGVHALAQVVHFDTDAVRTERSWRLGANTYLPSDVSVIWVREMPPHFHARFAASARSYRYVILNRDSRPGLAAGRATWERRPLDAERMHAAAQVLVGEHDFSAFRAIECQAKSPVRNVEQLRVVRSGEWLTIEVTANAFLHHMVRNLAGLLMSVGSGDSPPERVAAVLAGRDRKANAATAPPDGLYLAAVRYPGEFGLPEPAGAGDAGIGPQSAIIARNFAPPFDKGTP

Samples

Sample ID Description Type Environment
1 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
2 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
15 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
16 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
17 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
18 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
19 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
33 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
37 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
79 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
80 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
81 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
84 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
85 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
86 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
87 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
88 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
89 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
90 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
91 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
92 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
93 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
94 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
95 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
96 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
97 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
98 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
99 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
100 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
101 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
102 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
103 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
104 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
105 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
109 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
112 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
113 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
114 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
115 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
116 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
117 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
118 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
120 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
121 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
122 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.51
Nodule 0
Rhizoplane 4.62
Rhizosphere 90.26
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307415_100053847 3300032126 Bacteria 2744
2 Ga0070676_10153485 3300005328 Bacteria 1476
3 Ga0070690_100027356 3300005330 Bacteria 3525
4 Ga0070670_100141754 3300005331 Bacteria 2079
5 Ga0070677_10002752 3300005333 Bacteria 5624
6 Ga0068869_100072327 3300005334 Bacteria 2555
7 Ga0068869_100249116 3300005334 Bacteria 1418
8 Ga0070682_100042309 3300005337 Bacteria 2811
9 Ga0070682_100060755 3300005337 Bacteria 2390
10 Ga0070689_100008406 3300005340 Bacteria 7270
11 Ga0070675_100224291 3300005354 Bacteria 1638
12 Ga0070675_100386595 3300005354 Bacteria 1246
13 Ga0070674_100017028 3300005356 Bacteria 4563
14 Ga0070673_100105554 3300005364 Bacteria 2327
15 Ga0070688_100102231 3300005365 Bacteria 1891
16 Ga0070667_100047072 3300005367 Bacteria 3629
17 Ga0070714_100002422 3300005435 Bacteria 13743
18 Ga0070701_10004182 3300005438 Bacteria 5808
19 Ga0070701_10016863 3300005438 Bacteria 3405
20 Ga0070705_100113374 3300005440 Bacteria 1737
21 Ga0070700_100063045 3300005441 Bacteria 2344
22 Ga0070700_100220002 3300005441 Bacteria 1345
23 Ga0070694_100051756 3300005444 Bacteria 2774
24 Ga0070678_100067305 3300005456 Bacteria 2665
25 Ga0070678_100193520 3300005456 Bacteria 1673
26 Ga0070672_100070329 3300005543 Bacteria 2781
27 Ga0070672_100118714 3300005543 Bacteria 2163
28 Ga0070672_100141552 3300005543 Bacteria 1984
29 Ga0070672_100248922 3300005543 Bacteria 1496
30 Ga0070686_100005969 3300005544 Bacteria 6755
31 Ga0070686_100134502 3300005544 Bacteria 1714
32 Ga0070665_100001536 3300005548 Bacteria 26669
33 Ga0070704_100208278 3300005549 Bacteria 1583
34 Ga0070664_100055005 3300005564 Bacteria 3377
35 Ga0068857_100122255 3300005577 Bacteria 2345
36 Ga0068857_100193044 3300005577 Bacteria 1855
37 Ga0070702_100008789 3300005615 Bacteria 4912
38 Ga0070702_100142642 3300005615 Bacteria 1528
39 Ga0068859_100020692 3300005617 Bacteria 6603
40 Ga0068859_100156214 3300005617 Bacteria 2358
41 Ga0068859_100475607 3300005617 Bacteria 1345
42 Ga0068859_100557918 3300005617 Bacteria 1240
43 Ga0068864_100028224 3300005618 Bacteria 4741
44 Ga0068866_10154010 3300005718 Bacteria 1334
45 Ga0068861_100017640 3300005719 Bacteria 5073
46 Ga0068861_100308926 3300005719 Bacteria 1373
47 Ga0068861_100470116 3300005719 Bacteria 1130
48 Ga0068851_10154463 3300005834 Bacteria 1257
49 Ga0068870_10023338 3300005840 Bacteria 3049
50 Ga0068863_100035159 3300005841 Bacteria 4773
51 Ga0068860_100078858 3300005843 Bacteria 3132
52 Ga0068862_100008766 3300005844 Bacteria 8377
53 Ga0068862_100047522 3300005844 Bacteria 3663
54 Ga0081455_10020754 3300005937 Bacteria 6176
55 Ga0097621_100056679 3300006237 Bacteria 3202
56 Ga0068871_100243399 3300006358 Bacteria 1565
57 Ga0068865_100102112 3300006881 Bacteria 2101
58 Ga0068865_100310168 3300006881 Bacteria 1266
59 Ga0068865_100592809 3300006881 Bacteria 936
60 Ga0097620_100020691 3300006931 Bacteria 6603
61 Ga0097620_100156216 3300006931 Bacteria 2358
62 Ga0097620_100475603 3300006931 Bacteria 1345
63 Ga0097620_100557949 3300006931 Bacteria 1240
64 Ga0111539_10179227 3300009094 Bacteria 2475
65 Ga0111539_10981712 3300009094 Bacteria 982
66 Ga0105243_10513323 3300009148 Bacteria 1138
67 Ga0105242_10752262 3300009176 Bacteria 959
68 Ga0105248_10546562 3300009177 Bacteria 1306
69 Ga0163162_10021683 3300013306 Bacteria 6327
70 Ga0157375_10060961 3300013308 Bacteria 3744
71 Ga0163163_10022217 3300014325 Bacteria 6002
72 Ga0163163_10843887 3300014325 Bacteria 979
73 Ga0157380_10004085 3300014326 Bacteria 10080
74 Ga0157380_10011556 3300014326 Bacteria 6380
75 Ga0157380_10071657 3300014326 Bacteria 2804
76 Ga0157379_10770149 3300014968 Bacteria 907
77 Ga0163161_10498832 3300017792 Bacteria 991
78 Ga0207682_10017898 3300025893 Bacteria 2766
79 Ga0207642_10187299 3300025899 Bacteria 1133
80 Ga0207645_10187949 3300025907 Bacteria 1357
81 Ga0207645_10242651 3300025907 Bacteria 1190
82 Ga0207645_10304632 3300025907 Bacteria 1061
83 Ga0207643_10092694 3300025908 Bacteria 1763
84 Ga0207662_10036404 3300025918 Bacteria 2876
85 Ga0207681_10040609 3300025923 Bacteria 3097
86 Ga0207650_10151436 3300025925 Bacteria 1831
87 Ga0207659_10098345 3300025926 Bacteria 2200
88 Ga0207659_10322157 3300025926 Bacteria 1275
89 Ga0207659_10436874 3300025926 Bacteria 1100
90 Ga0207664_10013056 3300025929 Bacteria 5953
91 Ga0207706_10434280 3300025933 Bacteria 1137
92 Ga0207670_10038130 3300025936 Bacteria 3136
93 Ga0207670_10207192 3300025936 Bacteria 1493
94 Ga0207669_10017283 3300025937 Bacteria 3695
95 Ga0207704_10191024 3300025938 Bacteria 1490
96 Ga0207704_10444646 3300025938 Bacteria 1033
97 Ga0207691_10018791 3300025940 Bacteria 6546
98 Ga0207689_10031466 3300025942 Bacteria 4417
99 Ga0207689_10084221 3300025942 Bacteria 2614
100 Ga0207689_10138272 3300025942 Bacteria 2006
101 Ga0207689_10359746 3300025942 Bacteria 1210
102 Ga0207651_10231125 3300025960 Bacteria 1501
103 Ga0207668_10206799 3300025972 Bacteria 1567
104 Ga0207668_10389116 3300025972 Bacteria 1176
105 Ga0207708_10177226 3300026075 Bacteria 1691
106 Ga0207708_10303767 3300026075 Bacteria 1299
107 Ga0207708_10328863 3300026075 Bacteria 1249
108 Ga0207641_10039243 3300026088 Bacteria 3959
109 Ga0207641_10046423 3300026088 Bacteria 3661
110 Ga0207648_10039695 3300026089 Bacteria 4138
111 Ga0207676_10081019 3300026095 Bacteria 2636
112 Ga0207674_10135575 3300026116 Bacteria 2424
113 Ga0207674_10252441 3300026116 Bacteria 1711
114 Ga0207675_100040891 3300026118 Bacteria 4331
115 Ga0207675_100053780 3300026118 Bacteria 3756
116 Ga0207675_100124281 3300026118 Bacteria 2443
117 Ga0207675_100137849 3300026118 Bacteria 2316
118 Ga0207683_10006412 3300026121 Bacteria 10076
119 Ga0268266_10012944 3300028379 Bacteria 7194
120 Ga0268266_10504422 3300028379 Bacteria 1156
121 Ga0268265_10011415 3300028380 Bacteria 6007
122 Ga0268265_10150703 3300028380 Bacteria 1961
123 Ga0268264_10027543 3300028381 Bacteria 4645
124 Ga0265334_10000008 3300028573 Bacteria 200602
125 Ga0307515_10123304 3300028794 Bacteria 2916
126 Ga0307513_10004368 3300031456 Bacteria 18888
127 Ga0307513_10006131 3300031456 Bacteria 15778
128 Ga0307513_10019623 3300031456 Bacteria 8042
129 Ga0307513_10101951 3300031456 Bacteria 2891
130 Ga0307513_10107892 3300031456 Bacteria 2787
131 Ga0307509_10024157 3300031507 Bacteria 6811
132 Ga0307408_100010783 3300031548 Bacteria 6030
133 Ga0265313_10000807 3300031595 Bacteria 31618
134 Ga0307514_10203735 3300031649 Bacteria 1239
135 Ga0307413_10001598 3300031824 Bacteria 8745
136 Ga0307413_10004458 3300031824 Bacteria 6097
137 Ga0307410_10012094 3300031852 Bacteria 4970
138 Ga0307410_10022221 3300031852 Bacteria 3916
139 Ga0307406_10128667 3300031901 Bacteria 1774
140 Ga0307407_10027007 3300031903 Bacteria 3048
141 Ga0307409_100007399 3300031995 Bacteria 6566
142 Ga0307409_100069132 3300031995 Bacteria 2796
143 Ga0307416_100019420 3300032002 Bacteria 4818
144 Ga0307416_100886113 3300032002 Bacteria 992
145 Ga0307411_10001359 3300032005 Bacteria 9903
146 Ga0307411_10064378 3300032005 Bacteria 2455
147 Ga0307411_10119535 3300032005 Bacteria 1903
148 Ga0307411_10274024 3300032005 Bacteria 1340
149 Ga0451791_0939169 3300041451 Bacteria 4353
150 Ga0451802_0598301 3300041460 Bacteria 1781
151 Ga0451802_1259434 3300041460 Bacteria 3881
152 Ga0451804_0074096 3300041463 Bacteria 1736
153 Ga0451807_0368231 3300041486 Bacteria 4964
154 Ga0451807_1085369 3300041486 Bacteria 2043
155 Ga0451807_1769269 3300041486 Bacteria 1811
156 Ga0451837_0591918 3300041494 Bacteria 2664
157 Ga0495590_0003158 3300046457 Bacteria 6738
158 Ga0495590_0035065 3300046457 Bacteria 1752
159 Ga0495590_0093230 3300046457 Bacteria 1066
160 Ga0495638_0033336 3300046460 Bacteria 3294
161 Ga0495638_0078334 3300046460 Bacteria 2011
162 Ga0495616_0017186 3300046513 Bacteria 3991
163 Ga0495632_0040719 3300046519 Bacteria 2338
164 Ga0495632_0130034 3300046519 Bacteria 1172
165 Ga0495625_0042334 3300046660 Bacteria 3311
166 Ga0495625_0129015 3300046660 Bacteria 1714
167 Ga0495649_0008252 3300046694 Bacteria 6275
168 Ga0495649_0099544 3300046694 Bacteria 1546
169 Ga0495686_0188633 3300047472 Bacteria 1190
170 Ga0496114_0045647 3300048917 Bacteria 3641
171 Ga0496114_0690968 3300048917 Bacteria 895
172 Ga0501036_0078782 3300049572 Bacteria 2787
173 Ga0501040_0334101 3300049576 Bacteria 1085
174 Ga0501042_0239291 3300049578 Bacteria 1310
175 Ga0501068_0033325 3300049584 Bacteria 3067
176 Ga0501068_0323371 3300049584 Bacteria 989
177 Ga0501069_0046357 3300049585 Bacteria 2411
178 Ga0501069_0195630 3300049585 Bacteria 1171
179 Ga0501070_0026151 3300049586 Bacteria 4898
180 Ga0501070_0534401 3300049586 Bacteria 940
181 Ga0501072_0061992 3300049588 Bacteria 2950
182 Ga0501073_0002290 3300049589 Bacteria 14318
183 Ga0501074_0003467 3300049590 Bacteria 11194
184 Ga0501076_0017297 3300049592 Bacteria 5477
185 Ga0501076_0524311 3300049592 Bacteria 977
186 Ga0501077_0015808 3300049593 Bacteria 4753
187 Ga0501077_0227827 3300049593 Bacteria 1185
188 Ga0501079_0041188 3300049741 Bacteria 3564
189 Ga0501080_0037690 3300049742 Bacteria 4514
190 Ga0501083_0008069 3300049744 Bacteria 7447
191 nmdc:mga08y16_244260_c1 3300050511 Bacteria 1855
192 nmdc:mga08y16_901059_c1 3300050511 Bacteria 870
193 Ga0500644_0055961 3300053088 Bacteria 1371
194 Ga0501084_0007065 3300054114 Bacteria 9251
195 Ga0501082_0016484 3300060353 Bacteria 6359
196 Ga0307415_100053847
197 Ga0070676_10153485
198 Ga0070690_100027356
199 Ga0070670_100141754
200 Ga0070677_10002752
201 Ga0068869_100072327
202 Ga0068869_100249116
203 Ga0070682_100042309
204 Ga0070682_100060755
205 Ga0070689_100008406
206 Ga0070675_100224291
207 Ga0070675_100386595
208 Ga0070674_100017028
209 Ga0070673_100105554
210 Ga0070688_100102231
211 Ga0070667_100047072
212 Ga0070714_100002422
213 Ga0070701_10004182
214 Ga0070701_10016863
215 Ga0070705_100113374
216 Ga0070700_100063045
217 Ga0070700_100220002
218 Ga0070694_100051756
219 Ga0070678_100067305
220 Ga0070678_100193520
221 Ga0070672_100070329
222 Ga0070672_100118714
223 Ga0070672_100141552
224 Ga0070672_100248922
225 Ga0070686_100005969
226 Ga0070686_100134502
227 Ga0070665_100001536
228 Ga0070704_100208278
229 Ga0070664_100055005
230 Ga0068857_100122255
231 Ga0068857_100193044
232 Ga0070702_100008789
233 Ga0070702_100142642
234 Ga0068859_100020692
235 Ga0068859_100156214
236 Ga0068859_100475607
237 Ga0068859_100557918
238 Ga0068864_100028224
239 Ga0068866_10154010
240 Ga0068861_100017640
241 Ga0068861_100308926
242 Ga0068861_100470116
243 Ga0068851_10154463
244 Ga0068870_10023338
245 Ga0068863_100035159
246 Ga0068860_100078858
247 Ga0068862_100008766
248 Ga0068862_100047522
249 Ga0081455_10020754
250 Ga0097621_100056679
251 Ga0068871_100243399
252 Ga0068865_100102112
253 Ga0068865_100310168
254 Ga0068865_100592809
255 Ga0097620_100020691
256 Ga0097620_100156216
257 Ga0097620_100475603
258 Ga0097620_100557949
259 Ga0111539_10179227
260 Ga0111539_10981712
261 Ga0105243_10513323
262 Ga0105242_10752262
263 Ga0105248_10546562
264 Ga0163162_10021683
265 Ga0157375_10060961
266 Ga0163163_10022217
267 Ga0163163_10843887
268 Ga0157380_10004085
269 Ga0157380_10011556
270 Ga0157380_10071657
271 Ga0157379_10770149
272 Ga0163161_10498832
273 Ga0207682_10017898
274 Ga0207642_10187299
275 Ga0207645_10187949
276 Ga0207645_10242651
277 Ga0207645_10304632
278 Ga0207643_10092694
279 Ga0207662_10036404
280 Ga0207681_10040609
281 Ga0207650_10151436
282 Ga0207659_10098345
283 Ga0207659_10322157
284 Ga0207659_10436874
285 Ga0207664_10013056
286 Ga0207706_10434280
287 Ga0207670_10038130
288 Ga0207670_10207192
289 Ga0207669_10017283
290 Ga0207704_10191024
291 Ga0207704_10444646
292 Ga0207691_10018791
293 Ga0207689_10031466
294 Ga0207689_10084221
295 Ga0207689_10138272
296 Ga0207689_10359746
297 Ga0207651_10231125
298 Ga0207668_10206799
299 Ga0207668_10389116
300 Ga0207708_10177226
301 Ga0207708_10303767
302 Ga0207708_10328863
303 Ga0207641_10039243
304 Ga0207641_10046423
305 Ga0207648_10039695
306 Ga0207676_10081019
307 Ga0207674_10135575
308 Ga0207674_10252441
309 Ga0207675_100040891
310 Ga0207675_100053780
311 Ga0207675_100124281
312 Ga0207675_100137849
313 Ga0207683_10006412
314 Ga0268266_10012944
315 Ga0268266_10504422
316 Ga0268265_10011415
317 Ga0268265_10150703
318 Ga0268264_10027543
319 Ga0265334_10000008
320 Ga0307515_10123304
321 Ga0307513_10004368
322 Ga0307513_10006131
323 Ga0307513_10019623
324 Ga0307513_10101951
325 Ga0307513_10107892
326 Ga0307509_10024157
327 Ga0307408_100010783
328 Ga0265313_10000807
329 Ga0307514_10203735
330 Ga0307413_10001598
331 Ga0307413_10004458
332 Ga0307410_10012094
333 Ga0307410_10022221
334 Ga0307406_10128667
335 Ga0307407_10027007
336 Ga0307409_100007399
337 Ga0307409_100069132
338 Ga0307416_100019420
339 Ga0307416_100886113
340 Ga0307411_10001359
341 Ga0307411_10064378
342 Ga0307411_10119535
343 Ga0307411_10274024
344 Ga0451791_0939169
345 Ga0451802_0598301
346 Ga0451802_1259434
347 Ga0451804_0074096
348 Ga0451807_0368231
349 Ga0451807_1085369
350 Ga0451807_1769269
351 Ga0451837_0591918
352 Ga0495590_0003158
353 Ga0495590_0035065
354 Ga0495590_0093230
355 Ga0495638_0033336
356 Ga0495638_0078334
357 Ga0495616_0017186
358 Ga0495632_0040719
359 Ga0495632_0130034
360 Ga0495625_0042334
361 Ga0495625_0129015
362 Ga0495649_0008252
363 Ga0495649_0099544
364 Ga0495686_0188633
365 Ga0496114_0045647
366 Ga0496114_0690968
367 Ga0501036_0078782
368 Ga0501040_0334101
369 Ga0501042_0239291
370 Ga0501068_0033325
371 Ga0501068_0323371
372 Ga0501069_0046357
373 Ga0501069_0195630
374 Ga0501070_0026151
375 Ga0501070_0534401
376 Ga0501072_0061992
377 Ga0501073_0002290
378 Ga0501074_0003467
379 Ga0501076_0017297
380 Ga0501076_0524311
381 Ga0501077_0015808
382 Ga0501077_0227827
383 Ga0501079_0041188
384 Ga0501080_0037690
385 Ga0501083_0008069
386 nmdc:mga08y16_244260_c1
387 nmdc:mga08y16_901059_c1
388 Ga0500644_0055961
389 Ga0501084_0007065
390 Ga0501082_0016484

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

143

245

0.99

PF01416

PseudoU_synth_1

tRNA pseudouridine synthase

6

104

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.8518 2 252
8q70-assembly1.cif.gz_A-2 trna pseudouridine synthase a homodimer 0.8271 3 244
1vs3-assembly1.cif.gz_B crystal structure of the trna pseudouridine synthase trua from thermus thermophilus hb8 0.8247 1 245
2nre-assembly1.cif.gz_A-2 crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.8204 2 256
2nr0-assembly1.cif.gz_B crystal structure of pseudoudirinde synthase trua in complex with leucyl trna 0.8115 2 252
ID Description Score Start End Superfamily
2nqpB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9746 2 105 3.30.70.580
af_A0A0R0F7R0_40_148_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9569 1 105 3.30.70.580
af_Q2FW37_1_104_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9556 3 102 3.30.70.580
af_Q2QWH9_69_188_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9417 2 103 3.30.70.580
2nqpB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9391 2 105 3.30.70.580
ID Description Score Start End GO Terms
AF-A0A534B8P7-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 1.001 3 93 GO:0003723
GO:0009982
GO:0031119
GO:0140098
AF-A0A0F9HAV9-F1-model_v4 Pseudouridine synthase I TruA alpha/beta domain-containing protein 0.9902 1 101 GO:0003723
GO:0009982
GO:0031119
AF-A0A660U9I0-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9874 1 86 GO:0003723
GO:0031119
GO:0160147
AF-A0A660N222-F1-model_v4 tRNA pseudouridine synthase (EC 5.4.99.12) 0.9865 1 93 GO:0003723
GO:0031119
GO:0160147
AF-T1B9S1-F1-model_v4 tRNA pseudouridine synthase 0.986 3 99 GO:0003723
GO:0009982
GO:0031119

Map